FFCP PHASE1:Hg19::chr11:17888423..17888428,-: Difference between revisions
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|id=chr11:17888423..17888428,-
|short_description=p9@SERGEF
|description=CAGE_peak_9_at_SERGEF_5end
|association_with_transcript=-12bp_to_ENST00000531299_5end
|Ent...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=26297 | |EntrezGene=26297 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17499 | |HGNC=17499 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-12bp_to_ENST00000531299_5end | |||
|cluster_id=chr11:17888423..17888428,- | |||
|description=CAGE_peak_9_at_SERGEF_5end | |||
|id=chr11:17888423..17888428,- | |||
|ontology_enrichment_celltype=CL:0000054!9.02e-07!2;CL:0000137!9.02e-07!2;CL:0000092!9.02e-07!2 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006965;1.37e-13;2 | |||
|ontology_enrichment_disease=DOID:171!1.16e-27!10;DOID:3095!1.44e-12!22;DOID:2994!1.44e-12!22;DOID:0060085!2.75e-12!1;DOID:3165!2.75e-12!1;DOID:0060121!2.75e-12!1;DOID:2438!2.75e-12!1;DOID:4418!2.75e-12!1;DOID:169!2.91e-08!6;DOID:1909!5.73e-07!2;DOID:3193!6.42e-07!2;DOID:962!6.42e-07!2;DOID:200!9.02e-07!2;DOID:4305!9.02e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:171;6.92e-23;10!DOID:1909;1.00e-13;2!DOID:3193;1.37e-13;2!DOID:962;1.37e-13;2!DOID:3095;8.20e-11;22!DOID:2994;8.20e-11;22!DOID:1192;1.67e-09;3 | |||
|ontology_enrichment_disease_v019_2=DOID:171,6.42e-23,10;DOID:1909,1.07e-13,2;DOID:3193,1.37e-13,2;DOID:962,1.37e-13,2;DOID:3095,7.93e-11,22;DOID:2994,7.93e-11,22;DOID:1192,1.67e-09,3 | |||
|ontology_enrichment_uberon=UBERON:0001874!2.20e-12!1;UBERON:0002370!2.33e-12!4;UBERON:0005058!2.33e-12!4;UBERON:0009113!2.33e-12!4;UBERON:0003295!2.33e-12!4;UBERON:0005562!2.33e-12!4;UBERON:0000974!9.23e-11!10;UBERON:0000013!9.70e-10!5;UBERON:0002410!9.70e-10!5;UBERON:0003351!1.55e-08!6;UBERON:0004177!1.96e-07!7;UBERON:0003714!6.42e-07!2;UBERON:0000341!7.20e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;2.42e-50;2!UBERON:0005058;2.42e-50;2!UBERON:0009113;2.42e-50;2!UBERON:0002346;9.82e-26;4!UBERON:0000923;9.82e-26;4!UBERON:0010316;9.82e-26;4!UBERON:0005291;9.82e-26;4!UBERON:0004177;7.35e-21;5!UBERON:0005057;7.35e-21;5!UBERON:0002050;8.13e-21;5!UBERON:0005423;8.13e-21;5!UBERON:0003714;1.37e-13;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,8.66e-26,4;UBERON:0005058,8.66e-26,4;UBERON:0009113,8.66e-26,4;UBERON:0003295,8.66e-26,4;UBERON:0005562,8.66e-26,4;UBERON:0003351,1.44e-17,6;UBERON:0004177,3.29e-15,7;UBERON:0005057,3.29e-15,7;UBERON:0003714,1.37e-13,2;UBERON:0000974,5.98e-11,10;UBERON:0003408,5.98e-11,10;UBERON:0001042,5.98e-11,10;UBERON:0009145,5.98e-11,10;UBERON:0006562,4.83e-10,11;UBERON:0009722,4.83e-10,11;UBERON:0007690,4.83e-10,11 | |||
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|short_description=p9@SERGEF | |||
}} | }} |
Latest revision as of 01:31, 17 September 2015
Short description: | p9@SERGEF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_SERGEF_5end |
Coexpression cluster: | NA |
Association with transcript: | -12bp_to_ENST00000531299_5end |
EntrezGene: | SERGEF |
HGNC: | 17499 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
thymus | 8.66e-26 | 4 |
hemolymphoid system gland | 8.66e-26 | 4 |
thymic region | 8.66e-26 | 4 |
pharyngeal gland | 8.66e-26 | 4 |
thymus primordium | 8.66e-26 | 4 |
pharyngeal epithelium | 1.44e-17 | 6 |
hemopoietic organ | 3.29e-15 | 7 |
immune organ | 3.29e-15 | 7 |
neural tissue | 1.37e-13 | 2 |
neck | 5.98e-11 | 10 |
gland of gut | 5.98e-11 | 10 |
chordate pharynx | 5.98e-11 | 10 |
pharyngeal region of foregut | 5.98e-11 | 10 |
pharynx | 4.83e-10 | 11 |
entire pharyngeal arch endoderm | 4.83e-10 | 11 |
early pharyngeal endoderm | 4.83e-10 | 11 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 6.42e-23 | 10 |
melanoma | 1.07e-13 | 2 |
peripheral nerve sheath neoplasm | 1.37e-13 | 2 |
neurofibroma | 1.37e-13 | 2 |
germ cell and embryonal cancer | 7.93e-11 | 22 |
germ cell cancer | 7.93e-11 | 22 |
peripheral nervous system neoplasm | 1.67e-09 | 3 |