FFCP PHASE1:Hg19::chr19:2256405..2256428,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=126306 | |EntrezGene=126306 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24963 | |HGNC=24963 | ||
|TSSclassifier=strong | |||
|UniProt=Q96MG2 | |UniProt=Q96MG2 | ||
|association_with_transcript=0bp_to_ENST00000300961,NM_144616,uc002lvj.1_5end | |association_with_transcript=0bp_to_ENST00000300961,NM_144616,uc002lvj.1_5end | ||
|cluster_id=chr19:2256405..2256428,- | |||
|description=CAGE_peak_1_at_JSRP1_5end | |description=CAGE_peak_1_at_JSRP1_5end | ||
|id=chr19:2256405..2256428,- | |id=chr19:2256405..2256428,- | ||
|ontology_enrichment_celltype=CL:0000188!2.47e-12!9;CL:0000945!3.07e-09!24;CL:0000826!3.07e-09!24;CL:1000507!5.07e-08!12;CL:1000494!5.07e-08!12;CL:0000236!1.28e-07!14;CL:0000515!3.75e-07!4;CL:1000449!7.59e-07!16 | |ontology_enrichment_celltype=CL:0000188!2.47e-12!9;CL:0000945!3.07e-09!24;CL:0000826!3.07e-09!24;CL:1000507!5.07e-08!12;CL:1000494!5.07e-08!12;CL:0000236!1.28e-07!14;CL:0000515!3.75e-07!4;CL:1000449!7.59e-07!16 | ||
|ontology_enrichment_celltype_v019=CL:0000188;1.22e-15;9!CL:0000680;7.97e-12;7!CL:0000056;1.53e-10;4!CL:1000507;4.12e-10;10!CL:1000494;4.12e-10;10!CL:0000515;2.85e-08;3!CL:0002681;3.03e-08;12!CL:0002584;3.03e-08;12!CL:1000449;3.62e-08;15!CL:0000239;1.30e-07;3!CL:1000615;1.30e-07;3!CL:0002306;1.30e-07;3!CL:1000497;4.79e-07;17!CL:0002518;4.79e-07;17 | |ontology_enrichment_celltype_v019=CL:0000188;1.22e-15;9!CL:0000680;7.97e-12;7!CL:0000056;1.53e-10;4!CL:1000507;4.12e-10;10!CL:1000494;4.12e-10;10!CL:0000515;2.85e-08;3!CL:0002681;3.03e-08;12!CL:0002584;3.03e-08;12!CL:1000449;3.62e-08;15!CL:0000239;1.30e-07;3!CL:1000615;1.30e-07;3!CL:0002306;1.30e-07;3!CL:1000497;4.79e-07;17!CL:0002518;4.79e-07;17 | ||
|ontology_enrichment_celltype_v019_2=CL:0000188,9.31e-16,9;CL:0000515,1.50e-10,4;CL:1000507,4.69e-10,10;CL:1000494,4.69e-10,10;CL:0002681,3.53e-08,12;CL:0002584,3.53e-08,12;CL:1000449,3.99e-08,15;CL:0000239,1.51e-07,3;CL:1000615,1.51e-07,3;CL:0002306,1.51e-07,3;CL:1000497,5.21e-07,17;CL:0002518,5.21e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000515;1.53e-10;4 | |ontology_enrichment_development_v019=CL:0000515;1.53e-10;4 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003104!1.06e-09!238;UBERON:0009142!1.06e-09!238;UBERON:0003887!2.96e-08!21;UBERON:0009773!5.07e-08!12;UBERON:0001231!5.07e-08!12;UBERON:0004810!5.07e-08!12;UBERON:0007023!6.35e-08!115;UBERON:0006555!7.53e-08!17;UBERON:0005103!7.53e-08!17;UBERON:0000083!7.53e-08!17;UBERON:0009201!7.53e-08!17;UBERON:0004819!7.53e-08!17;UBERON:0006553!7.53e-08!17;UBERON:0003074!7.53e-08!17;UBERON:0003060!7.53e-08!17;UBERON:0004876!9.25e-08!20;UBERON:0000466!1.44e-07!126;UBERON:0000080!2.91e-07!18;UBERON:0002120!2.91e-07!18;UBERON:0004875!2.91e-07!18;UBERON:0005721!2.91e-07!18;UBERON:0005754!2.91e-07!18;UBERON:0007297!2.91e-07!18;UBERON:0005177!7.19e-07!107;UBERON:0004211!7.59e-07!16;UBERON:0001285!7.59e-07!16;UBERON:0007684!7.59e-07!16;UBERON:0003220!7.59e-07!16;UBERON:0004208!7.59e-07!16 | |ontology_enrichment_uberon=UBERON:0003104!1.06e-09!238;UBERON:0009142!1.06e-09!238;UBERON:0003887!2.96e-08!21;UBERON:0009773!5.07e-08!12;UBERON:0001231!5.07e-08!12;UBERON:0004810!5.07e-08!12;UBERON:0007023!6.35e-08!115;UBERON:0006555!7.53e-08!17;UBERON:0005103!7.53e-08!17;UBERON:0000083!7.53e-08!17;UBERON:0009201!7.53e-08!17;UBERON:0004819!7.53e-08!17;UBERON:0006553!7.53e-08!17;UBERON:0003074!7.53e-08!17;UBERON:0003060!7.53e-08!17;UBERON:0004876!9.25e-08!20;UBERON:0000466!1.44e-07!126;UBERON:0000080!2.91e-07!18;UBERON:0002120!2.91e-07!18;UBERON:0004875!2.91e-07!18;UBERON:0005721!2.91e-07!18;UBERON:0005754!2.91e-07!18;UBERON:0007297!2.91e-07!18;UBERON:0005177!7.19e-07!107;UBERON:0004211!7.59e-07!16;UBERON:0001285!7.59e-07!16;UBERON:0007684!7.59e-07!16;UBERON:0003220!7.59e-07!16;UBERON:0004208!7.59e-07!16 | ||
|ontology_enrichment_uberon_v019=UBERON:0001134;1.44e-31;16!UBERON:0002036;1.44e-31;16!UBERON:0002385;9.01e-16;31!UBERON:0001015;9.01e-16;31!UBERON:0000383;9.01e-16;31!UBERON:0004211;4.12e-10;10!UBERON:0009773;4.12e-10;10!UBERON:0001231;4.12e-10;10!UBERON:0004810;4.12e-10;10!UBERON:0000353;1.81e-08;15!UBERON:0001225;3.03e-08;12!UBERON:0008987;3.03e-08;12!UBERON:0006555;3.62e-08;15!UBERON:0004819;3.62e-08;15!UBERON:0001285;3.62e-08;15!UBERON:0007684;3.62e-08;15!UBERON:0006853;1.30e-07;3!UBERON:0007685;1.30e-07;3!UBERON:0004134;1.30e-07;3 | |ontology_enrichment_uberon_v019=UBERON:0001134;1.44e-31;16!UBERON:0002036;1.44e-31;16!UBERON:0002385;9.01e-16;31!UBERON:0001015;9.01e-16;31!UBERON:0000383;9.01e-16;31!UBERON:0004211;4.12e-10;10!UBERON:0009773;4.12e-10;10!UBERON:0001231;4.12e-10;10!UBERON:0004810;4.12e-10;10!UBERON:0000353;1.81e-08;15!UBERON:0001225;3.03e-08;12!UBERON:0008987;3.03e-08;12!UBERON:0006555;3.62e-08;15!UBERON:0004819;3.62e-08;15!UBERON:0001285;3.62e-08;15!UBERON:0007684;3.62e-08;15!UBERON:0006853;1.30e-07;3!UBERON:0007685;1.30e-07;3!UBERON:0004134;1.30e-07;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,4.69e-10,10;UBERON:0006555,1.22e-09,16;UBERON:0004819,1.22e-09,16;UBERON:0000353,2.08e-08,15;UBERON:0001225,3.53e-08,12;UBERON:0008987,3.53e-08,12;UBERON:0004211,3.99e-08,15;UBERON:0009773,3.99e-08,15;UBERON:0001231,3.99e-08,15;UBERON:0001285,3.99e-08,15;UBERON:0007684,3.99e-08,15;UBERON:0004208,3.99e-08,15;UBERON:0002100,4.72e-08,199;UBERON:0003104,8.23e-08,160;UBERON:0009142,8.23e-08,160;UBERON:0006853,1.51e-07,3;UBERON:0007685,1.51e-07,3;UBERON:0004134,1.51e-07,3 | |||
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| ||
|short_description=p1@JSRP1 | |short_description=p1@JSRP1 | ||
}} | }} |
Latest revision as of 23:30, 16 September 2015
Short description: | p1@JSRP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_JSRP1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000300961, NM_144616, uc002lvj.1_5end |
EntrezGene: | JSRP1 |
HGNC: | 24963 |
UniProt: | Q96MG2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cell of skeletal muscle | 9.31e-16 | 9 |
skeletal muscle myoblast | 1.50e-10 | 4 |
kidney tubule cell | 4.69e-10 | 10 |
nephron tubule epithelial cell | 4.69e-10 | 10 |
kidney cortical cell | 3.53e-08 | 12 |
renal cortical epithelial cell | 3.53e-08 | 12 |
epithelial cell of nephron | 3.99e-08 | 15 |
brush border epithelial cell | 1.51e-07 | 3 |
kidney cortex tubule cell | 1.51e-07 | 3 |
epithelial cell of proximal tubule | 1.51e-07 | 3 |
kidney cell | 5.21e-07 | 17 |
kidney epithelial cell | 5.21e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 4.69e-10 | 10 |
excretory tube | 1.22e-09 | 16 |
kidney epithelium | 1.22e-09 | 16 |
parenchyma | 2.08e-08 | 15 |
cortex of kidney | 3.53e-08 | 12 |
renal parenchyma | 3.53e-08 | 12 |
nephron epithelium | 3.99e-08 | 15 |
renal tubule | 3.99e-08 | 15 |
nephron tubule | 3.99e-08 | 15 |
nephron | 3.99e-08 | 15 |
uriniferous tubule | 3.99e-08 | 15 |
nephrogenic mesenchyme | 3.99e-08 | 15 |
trunk | 4.72e-08 | 199 |
mesenchyme | 8.23e-08 | 160 |
entire embryonic mesenchyme | 8.23e-08 | 160 |
renal cortex tubule | 1.51e-07 | 3 |
region of nephron tubule | 1.51e-07 | 3 |
proximal tubule | 1.51e-07 | 3 |