FFCP PHASE1:Hg19::chr1:150480551..150480560,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:150480551..150480560,+
|short_description=p2@ECM1
|description=CAGE_peak_2_at_ECM1_5end
|association_with_transcript=0bp_to_ENST00000369047,ENST00000369049...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1893 | |EntrezGene=1893 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3153 | |HGNC=3153 | ||
|TSSclassifier=strong | |||
|UniProt=Q16610 | |UniProt=Q16610 | ||
|association_with_transcript=0bp_to_ENST00000369047,ENST00000369049,ENST00000498579_5end | |||
|cluster_id=chr1:150480551..150480560,+ | |||
|description=CAGE_peak_2_at_ECM1_5end | |||
|id=chr1:150480551..150480560,+ | |||
|ontology_enrichment_celltype=CL:0000055!3.27e-33!180;CL:0000057!1.02e-23!75;CL:0000680!7.11e-11!57;CL:0000056!7.11e-11!57;CL:0000355!7.11e-11!57;CL:0000183!2.78e-10!59;CL:0000187!3.92e-10!54;CL:0002620!9.52e-10!23;CL:0000192!2.46e-09!42;CL:0000514!2.46e-09!42;CL:0002371!4.95e-09!591;CL:0000393!2.22e-07!60;CL:0000211!2.22e-07!60;CL:0002334!9.50e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000134;1.87e-10;55!CL:0002620;2.79e-10;23!CL:0000057;2.64e-09;73!CL:0000723;7.97e-09;61!CL:0000048;1.10e-08;58!CL:0002320;1.52e-08;188!CL:0000192;2.98e-07;43!CL:0002334;4.61e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.46e-24,76;CL:0000680,3.71e-11,58;CL:0000056,3.71e-11,58;CL:0000355,3.71e-11,58;CL:0000187,2.23e-10,55;CL:0002620,3.04e-10,23;CL:0000192,8.47e-10,43;CL:0000514,8.47e-10,43;CL:0000723,5.78e-09,433;CL:0000048,1.16e-08,427;CL:0000034,1.34e-07,441;CL:0000393,1.59e-07,61;CL:0000211,1.59e-07,61;CL:0002334,4.58e-07,12 | |||
|ontology_enrichment_development_v019=CL:0000514;2.98e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!1.04e-15!95;UBERON:0000914!6.58e-14!83;UBERON:0002329!6.58e-14!83;UBERON:0003077!6.58e-14!83;UBERON:0003059!6.58e-14!83;UBERON:0007282!6.58e-14!83;UBERON:0009618!6.58e-14!83;UBERON:0007285!6.58e-14!83;UBERON:0002199!1.28e-12!45;UBERON:0002416!1.28e-12!45;UBERON:0000486!2.29e-12!82;UBERON:0000475!1.01e-11!365;UBERON:0002097!2.03e-11!40;UBERON:0004290!2.08e-11!70;UBERON:0001134!1.89e-09!61;UBERON:0002036!1.89e-09!61;UBERON:0003082!1.89e-09!61;UBERON:0002385!2.58e-09!63;UBERON:0001015!2.58e-09!63;UBERON:0000383!2.58e-09!63;UBERON:0005256!5.62e-09!143;UBERON:0000468!4.29e-07!659 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;4.97e-10;41!UBERON:0002199;1.51e-09;46!UBERON:0002416;1.51e-09;46!UBERON:0002384;4.55e-09;198!UBERON:0003102;1.96e-08;50 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,5.52e-16,99;UBERON:0002199,5.03e-14,46;UBERON:0002416,5.03e-14,46;UBERON:0000486,7.39e-13,83;UBERON:0002097,9.47e-13,41;UBERON:0007524,3.35e-12,73;UBERON:0002329,5.65e-12,71;UBERON:0003059,5.65e-12,71;UBERON:0007282,5.65e-12,71;UBERON:0004290,5.65e-12,71;UBERON:0009618,5.65e-12,71;UBERON:0003077,6.80e-12,72;UBERON:0007285,6.80e-12,72;UBERON:0007503,1.24e-10,78;UBERON:0001134,6.68e-10,62;UBERON:0002036,6.68e-10,62;UBERON:0003082,6.68e-10,62;UBERON:0002385,9.22e-10,64;UBERON:0001015,9.22e-10,64;UBERON:0000383,9.22e-10,64;UBERON:0004923,6.98e-09,66;UBERON:0005256,3.63e-08,122;UBERON:0003104,1.88e-07,160;UBERON:0009142,1.88e-07,160 | |||
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| ||
|short_description=p2@ECM1 | |||
}} | }} |
Latest revision as of 22:11, 16 September 2015
Short description: | p2@ECM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ECM1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000369047, ENST00000369049, ENST00000498579_5end |
EntrezGene: | ECM1 |
HGNC: | 3153 |
UniProt: | Q16610 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.46e-24 | 76 |
muscle precursor cell | 3.71e-11 | 58 |
myoblast | 3.71e-11 | 58 |
multi-potent skeletal muscle stem cell | 3.71e-11 | 58 |
muscle cell | 2.23e-10 | 55 |
skin fibroblast | 3.04e-10 | 23 |
smooth muscle cell | 8.47e-10 | 43 |
smooth muscle myoblast | 8.47e-10 | 43 |
somatic stem cell | 5.78e-09 | 433 |
multi fate stem cell | 1.16e-08 | 427 |
stem cell | 1.34e-07 | 441 |
electrically responsive cell | 1.59e-07 | 61 |
electrically active cell | 1.59e-07 | 61 |
preadipocyte | 4.58e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
surface structure | 5.52e-16 | 99 |
integument | 5.03e-14 | 46 |
integumental system | 5.03e-14 | 46 |
multilaminar epithelium | 7.39e-13 | 83 |
skin of body | 9.47e-13 | 41 |
dense mesenchyme tissue | 3.35e-12 | 73 |
somite | 5.65e-12 | 71 |
presomitic mesoderm | 5.65e-12 | 71 |
presumptive segmental plate | 5.65e-12 | 71 |
dermomyotome | 5.65e-12 | 71 |
trunk paraxial mesoderm | 5.65e-12 | 71 |
paraxial mesoderm | 6.80e-12 | 72 |
presumptive paraxial mesoderm | 6.80e-12 | 72 |
epithelial vesicle | 1.24e-10 | 78 |
skeletal muscle tissue | 6.68e-10 | 62 |
striated muscle tissue | 6.68e-10 | 62 |
myotome | 6.68e-10 | 62 |
muscle tissue | 9.22e-10 | 64 |
musculature | 9.22e-10 | 64 |
musculature of body | 9.22e-10 | 64 |
organ component layer | 6.98e-09 | 66 |
trunk mesenchyme | 3.63e-08 | 122 |
mesenchyme | 1.88e-07 | 160 |
entire embryonic mesenchyme | 1.88e-07 | 160 |