FFCP PHASE1:Hg19::chr3:181429741..181429767,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6657 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11195 | |||
|TSSclassifier=strong | |||
|UniProt=P48431 | |||
|association_with_transcript=19bp_to_ENST00000325404,uc003fkx.2_5end | |||
|cluster_id=chr3:181429741..181429767,+ | |||
|coexpression_cluster_id=C1056 | |||
|description=CAGE_peak_2_at_SOX2_5end | |||
|id=chr3:181429741..181429767,+ | |||
|ontology_enrichment_celltype=CL:0002319!1.65e-13!25;CL:0000133!4.96e-10!59;CL:0000221!3.09e-09!71;CL:0000047!1.17e-08!8;CL:0002076!2.67e-07!43;CL:0000095!2.98e-07!17;CL:0000123!2.98e-07!17;CL:0000128!3.02e-07!7;CL:0000126!3.02e-07!7;CL:0000127!3.02e-07!7;CL:0002453!3.02e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0002319;6.06e-18;25!CL:0000095;1.18e-09;17!CL:0000128;5.43e-09;7!CL:0000126;5.43e-09;7!CL:0000127;5.43e-09;7!CL:0000540;4.05e-08;6!CL:0000404;4.05e-08;6!CL:0002322;7.74e-08;5!CL:0000243;9.05e-08;15!CL:0000125;9.05e-08;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,6.33e-18,25;CL:0000133,5.38e-12,59;CL:0000047,8.23e-11,8;CL:0000221,2.74e-10,72;CL:0000095,1.20e-09,17;CL:0000123,1.20e-09,17;CL:0000128,5.64e-09,7;CL:0000126,5.64e-09,7;CL:0000127,5.64e-09,7;CL:0002453,5.64e-09,7;CL:0000540,4.15e-08,6;CL:0000031,4.15e-08,6;CL:0000404,4.15e-08,6;CL:0002322,7.91e-08,5;CL:0000243,9.06e-08,15;CL:0000125,9.06e-08,15;CL:0000030,9.06e-08,15;CL:0000339,9.06e-08,15;CL:0000333,3.75e-07,41 | |||
|ontology_enrichment_development_v019=UBERON:0006601;4.81e-15;82!CL:0000031;4.05e-08;6!CL:0000339;9.05e-08;15!CL:0000133;9.83e-07;59 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.36e-54!82;UBERON:0000073!1.60e-52!94;UBERON:0001016!1.60e-52!94;UBERON:0005743!2.38e-51!86;UBERON:0001049!8.45e-46!57;UBERON:0005068!8.45e-46!57;UBERON:0006241!8.45e-46!57;UBERON:0007135!8.45e-46!57;UBERON:0000955!7.41e-42!69;UBERON:0006238!7.41e-42!69;UBERON:0000924!9.42e-42!173;UBERON:0006601!9.42e-42!173;UBERON:0002616!2.75e-41!59;UBERON:0004121!3.17e-40!169;UBERON:0002346!6.45e-39!90;UBERON:0003075!1.49e-37!86;UBERON:0007284!1.49e-37!86;UBERON:0007023!3.77e-35!115;UBERON:0002780!3.38e-34!41;UBERON:0001890!3.38e-34!41;UBERON:0006240!3.38e-34!41;UBERON:0000153!2.14e-33!129;UBERON:0007811!2.14e-33!129;UBERON:0003080!5.66e-33!42;UBERON:0000033!8.69e-33!123;UBERON:0001893!3.21e-29!34;UBERON:0002020!3.92e-29!34;UBERON:0003528!3.92e-29!34;UBERON:0002791!2.10e-28!33;UBERON:0001869!1.58e-27!32;UBERON:0003056!1.03e-26!61;UBERON:0000956!1.94e-21!25;UBERON:0000203!1.94e-21!25;UBERON:0002619!1.76e-18!22;UBERON:0001950!1.11e-16!20;UBERON:0000064!9.83e-15!219;UBERON:0003076!1.28e-13!15;UBERON:0003057!1.28e-13!15;UBERON:0000922!2.82e-13!612;UBERON:0000468!6.49e-12!659;UBERON:0000475!8.31e-12!365;UBERON:0004732!4.62e-11!13;UBERON:0004733!1.35e-10!12;UBERON:0002028!1.35e-10!12;UBERON:0007277!1.35e-10!12;UBERON:0002050!2.87e-10!605;UBERON:0005423!2.87e-10!605;UBERON:0000923!5.01e-10!604;UBERON:0005291!5.01e-10!604;UBERON:0006598!5.01e-10!604;UBERON:0002532!5.01e-10!604;UBERON:0004111!5.40e-10!241;UBERON:0002420!2.85e-09!9;UBERON:0007245!2.85e-09!9;UBERON:0010009!2.85e-09!9;UBERON:0010011!2.85e-09!9;UBERON:0000454!2.85e-09!9;UBERON:0000062!3.21e-09!511;UBERON:0002308!4.16e-09!9;UBERON:0000125!4.16e-09!9;UBERON:0000025!5.39e-09!194;UBERON:0000477!7.46e-09!286;UBERON:0000480!9.36e-09!626;UBERON:0000481!1.02e-08!347;UBERON:0000467!1.57e-08!625;UBERON:0002680!5.40e-08!9;UBERON:0001895!5.40e-08!9;UBERON:0010092!5.40e-08!9;UBERON:0000483!5.87e-08!309;UBERON:0000119!1.28e-07!312;UBERON:0009663!1.72e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;6.49e-33;34!UBERON:0000073;1.56e-32;53!UBERON:0002616;1.56e-32;53!UBERON:0003528;1.60e-32;34!UBERON:0002020;1.60e-32;34!UBERON:0001869;2.61e-32;32!UBERON:0002791;2.93e-32;32!UBERON:0002780;9.90e-32;41!UBERON:0001890;9.90e-32;41!UBERON:0000956;1.09e-27;25!UBERON:0000203;1.09e-27;25!UBERON:0001017;3.78e-24;75!UBERON:0002619;8.07e-24;22!UBERON:0000955;1.31e-23;68!UBERON:0001016;4.29e-22;83!UBERON:0001950;1.89e-21;20!UBERON:0004732;6.52e-14;13!UBERON:0004733;2.45e-13;12!UBERON:0002028;2.45e-13;12!UBERON:0002420;1.27e-11;9!UBERON:0007245;1.27e-11;9!UBERON:0010009;1.27e-11;9!UBERON:0010011;1.27e-11;9!UBERON:0000454;1.27e-11;9!UBERON:0000125;2.12e-11;9!UBERON:0002308;2.12e-11;9!UBERON:0002680;5.92e-10;9!UBERON:0001895;5.92e-10;9!UBERON:0011216;1.07e-09;132!UBERON:0000922;1.36e-09;49!UBERON:0007023;2.44e-09;114!UBERON:0009663;2.62e-09;7!UBERON:0002298;4.48e-08;6!UBERON:0000200;7.28e-08;6!UBERON:0001894;8.22e-08;7!UBERON:0004121;1.37e-07;165!UBERON:0000349;1.73e-07;5!UBERON:0001872;4.47e-07;5!UBERON:0001871;6.22e-07;6!UBERON:0002037;6.53e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.56e-68,89;UBERON:0001017,1.03e-67,81;UBERON:0001049,3.55e-61,56;UBERON:0005068,3.55e-61,56;UBERON:0006241,3.55e-61,56;UBERON:0007135,3.55e-61,56;UBERON:0000073,6.18e-57,53;UBERON:0002616,6.18e-57,53;UBERON:0000955,8.54e-54,68;UBERON:0006238,8.54e-54,68;UBERON:0004121,3.06e-47,171;UBERON:0000924,3.06e-47,171;UBERON:0006601,3.06e-47,171;UBERON:0002346,1.72e-46,86;UBERON:0003075,1.43e-44,82;UBERON:0007284,1.43e-44,82;UBERON:0002780,2.30e-44,41;UBERON:0001890,2.30e-44,41;UBERON:0003080,2.30e-44,41;UBERON:0006240,2.30e-44,41;UBERON:0010371,1.64e-39,104;UBERON:0001893,7.39e-38,34;UBERON:0003528,9.58e-38,34;UBERON:0002020,9.58e-38,34;UBERON:0011216,1.74e-36,223;UBERON:0001869,1.20e-35,32;UBERON:0002791,1.48e-35,32;UBERON:0003056,5.15e-34,61;UBERON:0007023,1.49e-29,114;UBERON:0000956,1.09e-27,25;UBERON:0000203,1.09e-27,25;UBERON:0010314,1.34e-25,132;UBERON:0002619,8.09e-24,22;UBERON:0001950,1.82e-21,20;UBERON:0003076,2.86e-17,15;UBERON:0003057,2.86e-17,15;UBERON:0004732,6.12e-14,13;UBERON:0004733,2.49e-13,12;UBERON:0002028,2.49e-13,12;UBERON:0007277,2.49e-13,12;UBERON:0000922,2.22e-12,592;UBERON:0002420,1.31e-11,9;UBERON:0007245,1.31e-11,9;UBERON:0010009,1.31e-11,9;UBERON:0010011,1.31e-11,9;UBERON:0000454,1.31e-11,9;UBERON:0000125,2.15e-11,9;UBERON:0002308,2.15e-11,9;UBERON:0000923,1.89e-10,560;UBERON:0010316,1.89e-10,560;UBERON:0005291,1.89e-10,560;UBERON:0006598,1.89e-10,560;UBERON:0010317,1.89e-10,560;UBERON:0002532,1.89e-10,560;UBERON:0002050,4.10e-10,564;UBERON:0000025,5.55e-10,192;UBERON:0002680,6.03e-10,9;UBERON:0001895,6.03e-10,9;UBERON:0010092,6.03e-10,9;UBERON:0004111,9.13e-10,240;UBERON:0005423,1.58e-09,581;UBERON:0009663,2.73e-09,7;UBERON:0002298,4.42e-08,6;UBERON:0000200,7.47e-08,6;UBERON:0001894,8.13e-08,7;UBERON:0006222,8.13e-08,7;UBERON:0000349,1.78e-07,5;UBERON:0001872,4.25e-07,5;UBERON:0001871,6.35e-07,6;UBERON:0002037,6.68e-07,6;UBERON:0006215,6.68e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0,0,0,0,0,0,0,0,0,20.8074588149772,7.34402488479311,27.2705607685936,86.1570321264481,40.241080971428,40.9269005079057,0,0,0,0,0,0,0.919421224478927,0.6024118375565,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255725123687061,0,0,0,0,0,10.1152254365553,0.443458794925128,2.45937399940753,6.28699562389021,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0.183201743930407,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,2.8757911252537,0.576175924479999,0.234321431833797,0,0,0,0.117434498643765,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15956511897978,0,0.573609190778008,36.1042170143602,51.4215501087363,37.0658677753764,41.5680830611635,33.3063523155829,22.2636189036256,0,3.21620469096443,1.38134921352481,4.64367928031979,1.44375896333917,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0,0,2.33678033231916,0.857839051492628,0,0,0.100528972411631,1.38882667737794,0,0,1.44331342025273,54.371359933311,0,0,0,0,0.790204397959275,5.15091697256924,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,101.12966044054,57.2615356973536,34.0247077622186,41.8790663335872,42.7418963607619,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.391602314925481,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.10922128611516,1.80455823272956,1.10497186723076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412164046590889,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0.661139661443912,0.192190067365106,0.638063562472921,0.809262246844399,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05844323998063,0,0,0.753150406214233,0,0,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,50.3646165260481,0,0.284136146806413,0,0,0,28.8302817852226,39.6687754277646,0,0,0,3.38721580026819,0.276283915531148,0.251932747854276,13.192660042778,0,0,0,0.179021174675609,0,0.394573622547734,0,0,15.5093239375235,28.8508785283357,15.9691038400955,0,0,0,20.9379944845319,2.79679015322043,1.18193840883968,13.4449915564171,30.3268797918584,0,29.2294657318567,37.2642995352511,16.7839909948792,15.7022549102339,12.412999996049,22.5966959068592,0,3.62501735124369,2.00070672109872,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.20900664313098,0,0,1.50377859655677,1.22206028986725,20.7564790076435,20.882305681959,22.1374532951565,35.2507925488941,0,32.0942290643715,0,15.6531695145672,0,0.394584402849391,0,30.3012034014185,0.884612114798832,1.9542044523884,3.62908669890365,0,0,0.313932918407225,0,3.69992409838731,0.416024019039416,0,0,0,0.17472666824203,14.4468267276158,0,0,0,9.79589066533036,0,7.45736444575757,0,0,29.9460064871306,5.27988733383968,0,0.426905989478705,0,4.32271251462318,35.277271619102,25.9108446771566,0.576219191952599,0,0,1.63085047288337,2.196659772559,0,0,25.2176521258112,24.5060628216668,0,0,0.262887354279314,0.279282401272254,0.229160424011684,0,13.3784930334324,0.429226048136571,0.223171457441873,0.134366944973453,0,0,0,0,0,2.26383207483922,0,27.0378094535163,53.5279386018492,15.9145616980369,20.0807577431961,25.7573009578095,0,0,31.2860216788827,2.0126081255956,0,0.262272940674991,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,27.2787037922872,27.7688463659649,0.342173675768659,0,1.28144895081234,2.51526888159466,1.24271716604159,0,0.395223263795889,0,4.46838880439127,0,0,0,0,30.154386480045,24.8099090390756,28.1880671923535,24.1618496263545,25.8034138060532,29.8399148634133,51.664207247231,0,6.99890284587797,0.151649117541648,0,0,20.6067358555028,54.2004647004486,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.8638222087738,0,0,0,0,0,2.3244333569449,0.39997479170986,0,0,0,0,0.699397538597222,1.24415452006595,0,0,39.1592195221182,0.218419276384028,4.58277830875868,12.754495206101,27.8855469582755,8.9383186875719,0,0,0.80057074828547,0,0,32.1146125482298,35.4241440813962,25.8606851672585,18.2553564174272,14.8722300770814,24.3433528674047,30.357421378788,2.85538840518309,16.4888167081723,18.9931254589862,2.38457178078183,0.115525666150338,0,1.3807198521202,0,0.902523940191087,0,0,0,0,0,26.7448835088843,30.4620458459401,30.3829590856741,27.5858774343495,27.348740450911,0,1.98484471355718,0,11.8819057704824,4.28561468702629,6.72567444437648,7.89055285507621,3.87025725297206,0,0.230467975111559,0,22.0901632174703,28.0849743113366,0,0,1.88383422841234,42.2640936874045,0,0.913158720509496,0,0,2.07281978112303,0,0,0.695433089210318,0,0,0,0,2.15113679410139,9.11156405625353,11.1629560234497,0,0,0,0,0.671132590786754,9.1279717262176,0,0,0,0,0.971421986118279,158.377016763846,0,0,54.3270654607398,0,18.7193926022675,0.154348316215889,0.437119121007915,31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| |||
|short_description=p2@SOX2 | |||
}} |
Latest revision as of 22:08, 16 September 2015
Short description: | p2@SOX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SOX2_5end |
Coexpression cluster: | C1056_small_Neural_Astrocyte_teratocarcinoma_H9_hippocampus_testicular |
Association with transcript: | 19bp_to_ENST00000325404, uc003fkx.2_5end |
EntrezGene: | SOX2 |
HGNC: | 11195 |
UniProt: | P48431 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 6.33e-18 | 25 |
neurectodermal cell | 5.38e-12 | 59 |
neuronal stem cell | 8.23e-11 | 8 |
ectodermal cell | 2.74e-10 | 72 |
neuron associated cell | 1.20e-09 | 17 |
neuron associated cell (sensu Vertebrata) | 1.20e-09 | 17 |
oligodendrocyte | 5.64e-09 | 7 |
macroglial cell | 5.64e-09 | 7 |
astrocyte | 5.64e-09 | 7 |
oligodendrocyte precursor cell | 5.64e-09 | 7 |
neuron | 4.15e-08 | 6 |
neuroblast | 4.15e-08 | 6 |
electrically signaling cell | 4.15e-08 | 6 |
embryonic stem cell | 7.91e-08 | 5 |
glial cell (sensu Vertebrata) | 9.06e-08 | 15 |
glial cell | 9.06e-08 | 15 |
glioblast | 9.06e-08 | 15 |
glioblast (sensu Vertebrata) | 9.06e-08 | 15 |
migratory neural crest cell | 3.75e-07 | 41 |