FFCP PHASE1:Hg19::chr3:181429704..181429722,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6657 | |EntrezGene=6657 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11195 | |HGNC=11195 | ||
|TSSclassifier=strong | |||
|UniProt=P48431 | |UniProt=P48431 | ||
|association_with_transcript=0bp_to_ENST00000325404,ENST00000431565,NM_003106,uc003fkx.2_5end | |association_with_transcript=0bp_to_ENST00000325404,ENST00000431565,NM_003106,uc003fkx.2_5end | ||
|cluster_id=chr3:181429704..181429722,+ | |||
|coexpression_cluster_id=C1056 | |coexpression_cluster_id=C1056 | ||
|description=CAGE_peak_1_at_SOX2_5end | |description=CAGE_peak_1_at_SOX2_5end | ||
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|ontology_enrichment_celltype=CL:0002319!3.56e-13!25;CL:0000133!1.41e-09!59;CL:0000047!5.99e-09!8;CL:0000221!4.29e-08!71;CL:0002076!1.74e-07!43;CL:0000540!4.07e-07!6;CL:0000031!4.07e-07!6;CL:0000404!4.07e-07!6;CL:0000128!4.67e-07!7;CL:0000126!4.67e-07!7;CL:0000127!4.67e-07!7;CL:0002453!4.67e-07!7;CL:0000095!8.18e-07!17;CL:0000123!8.18e-07!17 | |ontology_enrichment_celltype=CL:0002319!3.56e-13!25;CL:0000133!1.41e-09!59;CL:0000047!5.99e-09!8;CL:0000221!4.29e-08!71;CL:0002076!1.74e-07!43;CL:0000540!4.07e-07!6;CL:0000031!4.07e-07!6;CL:0000404!4.07e-07!6;CL:0000128!4.67e-07!7;CL:0000126!4.67e-07!7;CL:0000127!4.67e-07!7;CL:0002453!4.67e-07!7;CL:0000095!8.18e-07!17;CL:0000123!8.18e-07!17 | ||
|ontology_enrichment_celltype_v019=CL:0002319;5.45e-17;25!CL:0000095;8.20e-09;17!CL:0000540;1.35e-08;6!CL:0000404;1.35e-08;6!CL:0000128;1.61e-08;7!CL:0000126;1.61e-08;7!CL:0000127;1.61e-08;7!CL:0002322;1.62e-07;5!CL:0000243;5.11e-07;15!CL:0000125;5.11e-07;15 | |ontology_enrichment_celltype_v019=CL:0002319;5.45e-17;25!CL:0000095;8.20e-09;17!CL:0000540;1.35e-08;6!CL:0000404;1.35e-08;6!CL:0000128;1.61e-08;7!CL:0000126;1.61e-08;7!CL:0000127;1.61e-08;7!CL:0002322;1.62e-07;5!CL:0000243;5.11e-07;15!CL:0000125;5.11e-07;15 | ||
|ontology_enrichment_celltype_v019_2=CL:0002319,5.17e-17,25;CL:0000133,1.43e-12,59;CL:0000047,6.59e-11,8;CL:0000221,1.56e-10,72;CL:0000095,7.86e-09,17;CL:0000123,7.86e-09,17;CL:0000540,1.35e-08,6;CL:0000031,1.35e-08,6;CL:0000404,1.35e-08,6;CL:0000128,1.61e-08,7;CL:0000126,1.61e-08,7;CL:0000127,1.61e-08,7;CL:0002453,1.61e-08,7;CL:0002322,1.62e-07,5;CL:0000243,4.93e-07,15;CL:0000125,4.93e-07,15;CL:0000030,4.93e-07,15;CL:0000339,4.93e-07,15 | |||
|ontology_enrichment_development_v019=UBERON:0006601;6.77e-14;82!CL:0000031;1.35e-08;6!CL:0000339;5.11e-07;15!CL:0000133;8.13e-07;59 | |ontology_enrichment_development_v019=UBERON:0006601;6.77e-14;82!CL:0000031;1.35e-08;6!CL:0000339;5.11e-07;15!CL:0000133;8.13e-07;59 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.42e-50!82;UBERON:0000073!5.62e-49!94;UBERON:0001016!5.62e-49!94;UBERON:0005743!5.41e-48!86;UBERON:0001049!4.94e-42!57;UBERON:0005068!4.94e-42!57;UBERON:0006241!4.94e-42!57;UBERON:0007135!4.94e-42!57;UBERON:0000924!1.71e-40!173;UBERON:0006601!1.71e-40!173;UBERON:0004121!5.05e-39!169;UBERON:0000955!5.17e-39!69;UBERON:0006238!5.17e-39!69;UBERON:0002616!1.68e-38!59;UBERON:0002346!2.43e-34!90;UBERON:0000153!1.35e-33!129;UBERON:0007811!1.35e-33!129;UBERON:0003075!4.98e-33!86;UBERON:0007284!4.98e-33!86;UBERON:0000033!6.01e-33!123;UBERON:0002780!1.20e-31!41;UBERON:0001890!1.20e-31!41;UBERON:0006240!1.20e-31!41;UBERON:0007023!2.57e-31!115;UBERON:0003080!1.81e-30!42;UBERON:0002020!9.64e-27!34;UBERON:0003528!9.64e-27!34;UBERON:0001893!9.73e-27!34;UBERON:0002791!4.71e-26!33;UBERON:0001869!4.25e-25!32;UBERON:0003056!1.75e-24!61;UBERON:0000956!9.79e-20!25;UBERON:0000203!9.79e-20!25;UBERON:0002619!6.03e-17!22;UBERON:0001950!3.16e-15!20;UBERON:0000064!2.18e-14!219;UBERON:0000475!3.19e-13!365;UBERON:0000922!1.96e-12!612;UBERON:0003076!1.99e-12!15;UBERON:0003057!1.99e-12!15;UBERON:0000468!4.78e-12!659;UBERON:0004732!1.65e-10!13;UBERON:0004733!4.87e-10!12;UBERON:0002028!4.87e-10!12;UBERON:0007277!4.87e-10!12;UBERON:0004111!1.16e-09!241;UBERON:0002050!1.45e-09!605;UBERON:0005423!1.45e-09!605;UBERON:0000923!2.55e-09!604;UBERON:0005291!2.55e-09!604;UBERON:0006598!2.55e-09!604;UBERON:0002532!2.55e-09!604;UBERON:0000481!5.67e-09!347;UBERON:0000477!1.31e-08!286;UBERON:0002420!1.33e-08!9;UBERON:0007245!1.33e-08!9;UBERON:0010009!1.33e-08!9;UBERON:0010011!1.33e-08!9;UBERON:0000454!1.33e-08!9;UBERON:0000062!1.52e-08!511;UBERON:0000025!1.72e-08!194;UBERON:0002308!1.95e-08!9;UBERON:0000125!1.95e-08!9;UBERON:0000480!2.28e-08!626;UBERON:0000467!3.61e-08!625;UBERON:0002680!9.00e-08!9;UBERON:0001895!9.00e-08!9;UBERON:0010092!9.00e-08!9;UBERON:0000483!3.95e-07!309;UBERON:0009663!6.47e-07!7;UBERON:0000119!8.46e-07!312 | |ontology_enrichment_uberon=UBERON:0001017!2.42e-50!82;UBERON:0000073!5.62e-49!94;UBERON:0001016!5.62e-49!94;UBERON:0005743!5.41e-48!86;UBERON:0001049!4.94e-42!57;UBERON:0005068!4.94e-42!57;UBERON:0006241!4.94e-42!57;UBERON:0007135!4.94e-42!57;UBERON:0000924!1.71e-40!173;UBERON:0006601!1.71e-40!173;UBERON:0004121!5.05e-39!169;UBERON:0000955!5.17e-39!69;UBERON:0006238!5.17e-39!69;UBERON:0002616!1.68e-38!59;UBERON:0002346!2.43e-34!90;UBERON:0000153!1.35e-33!129;UBERON:0007811!1.35e-33!129;UBERON:0003075!4.98e-33!86;UBERON:0007284!4.98e-33!86;UBERON:0000033!6.01e-33!123;UBERON:0002780!1.20e-31!41;UBERON:0001890!1.20e-31!41;UBERON:0006240!1.20e-31!41;UBERON:0007023!2.57e-31!115;UBERON:0003080!1.81e-30!42;UBERON:0002020!9.64e-27!34;UBERON:0003528!9.64e-27!34;UBERON:0001893!9.73e-27!34;UBERON:0002791!4.71e-26!33;UBERON:0001869!4.25e-25!32;UBERON:0003056!1.75e-24!61;UBERON:0000956!9.79e-20!25;UBERON:0000203!9.79e-20!25;UBERON:0002619!6.03e-17!22;UBERON:0001950!3.16e-15!20;UBERON:0000064!2.18e-14!219;UBERON:0000475!3.19e-13!365;UBERON:0000922!1.96e-12!612;UBERON:0003076!1.99e-12!15;UBERON:0003057!1.99e-12!15;UBERON:0000468!4.78e-12!659;UBERON:0004732!1.65e-10!13;UBERON:0004733!4.87e-10!12;UBERON:0002028!4.87e-10!12;UBERON:0007277!4.87e-10!12;UBERON:0004111!1.16e-09!241;UBERON:0002050!1.45e-09!605;UBERON:0005423!1.45e-09!605;UBERON:0000923!2.55e-09!604;UBERON:0005291!2.55e-09!604;UBERON:0006598!2.55e-09!604;UBERON:0002532!2.55e-09!604;UBERON:0000481!5.67e-09!347;UBERON:0000477!1.31e-08!286;UBERON:0002420!1.33e-08!9;UBERON:0007245!1.33e-08!9;UBERON:0010009!1.33e-08!9;UBERON:0010011!1.33e-08!9;UBERON:0000454!1.33e-08!9;UBERON:0000062!1.52e-08!511;UBERON:0000025!1.72e-08!194;UBERON:0002308!1.95e-08!9;UBERON:0000125!1.95e-08!9;UBERON:0000480!2.28e-08!626;UBERON:0000467!3.61e-08!625;UBERON:0002680!9.00e-08!9;UBERON:0001895!9.00e-08!9;UBERON:0010092!9.00e-08!9;UBERON:0000483!3.95e-07!309;UBERON:0009663!6.47e-07!7;UBERON:0000119!8.46e-07!312 | ||
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| ||
|short_description=p1@SOX2 | |short_description=p1@SOX2 | ||
}} | }} |
Latest revision as of 22:08, 16 September 2015
Short description: | p1@SOX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SOX2_5end |
Coexpression cluster: | C1056_small_Neural_Astrocyte_teratocarcinoma_H9_hippocampus_testicular |
Association with transcript: | 0bp_to_ENST00000325404, ENST00000431565, NM_003106, uc003fkx.2_5end |
EntrezGene: | SOX2 |
HGNC: | 11195 |
UniProt: | P48431 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 5.17e-17 | 25 |
neurectodermal cell | 1.43e-12 | 59 |
neuronal stem cell | 6.59e-11 | 8 |
ectodermal cell | 1.56e-10 | 72 |
neuron associated cell | 7.86e-09 | 17 |
neuron associated cell (sensu Vertebrata) | 7.86e-09 | 17 |
neuron | 1.35e-08 | 6 |
neuroblast | 1.35e-08 | 6 |
electrically signaling cell | 1.35e-08 | 6 |
oligodendrocyte | 1.61e-08 | 7 |
macroglial cell | 1.61e-08 | 7 |
astrocyte | 1.61e-08 | 7 |
oligodendrocyte precursor cell | 1.61e-08 | 7 |
embryonic stem cell | 1.62e-07 | 5 |
glial cell (sensu Vertebrata) | 4.93e-07 | 15 |
glial cell | 4.93e-07 | 15 |
glioblast | 4.93e-07 | 15 |
glioblast (sensu Vertebrata) | 4.93e-07 | 15 |