FFCP PHASE1:Hg19::chr1:13840242..13840268,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=126755 | |EntrezGene=126755 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27005 | |HGNC=27005 | ||
|TSSclassifier=strong | |||
|UniProt=Q5VT99 | |UniProt=Q5VT99 | ||
|association_with_transcript=0bp_to_NM_001010847,uc001avb.2_5end | |association_with_transcript=0bp_to_NM_001010847,uc001avb.2_5end | ||
|cluster_id=chr1:13840242..13840268,- | |||
|coexpression_cluster_id=C24 | |||
|description=CAGE_peak_2_at_LRRC38_5end | |description=CAGE_peak_2_at_LRRC38_5end | ||
|id=chr1:13840242..13840268,- | |id=chr1:13840242..13840268,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002144;5.59e-16;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002144,6.20e-16,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3112;8.67e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3112,8.67e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0007023!9.67e-27!115;UBERON:0001017!5.67e-17!82;UBERON:0005743!7.07e-17!86;UBERON:0001049!3.74e-15!57;UBERON:0005068!3.74e-15!57;UBERON:0006241!3.74e-15!57;UBERON:0007135!3.74e-15!57;UBERON:0000073!2.70e-14!94;UBERON:0001016!2.70e-14!94;UBERON:0002346!3.36e-14!90;UBERON:0000955!4.39e-13!69;UBERON:0006238!4.39e-13!69;UBERON:0003075!5.57e-13!86;UBERON:0007284!5.57e-13!86;UBERON:0002616!9.02e-12!59;UBERON:0000477!1.17e-11!286;UBERON:0004111!4.31e-11!241;UBERON:0003076!5.10e-11!15;UBERON:0003057!5.10e-11!15;UBERON:0000025!6.42e-11!194;UBERON:0000483!2.13e-10!309;UBERON:0000153!3.60e-10!129;UBERON:0007811!3.60e-10!129;UBERON:0000119!4.00e-10!312;UBERON:0000924!4.15e-10!173;UBERON:0006601!4.15e-10!173;UBERON:0004121!3.42e-09!169;UBERON:0002298!8.53e-09!8;UBERON:0000033!3.23e-08!123;UBERON:0008814!8.37e-08!15;UBERON:0002780!1.05e-07!41;UBERON:0001890!1.05e-07!41;UBERON:0006240!1.05e-07!41;UBERON:0000922!1.33e-07!612;UBERON:0000468!1.67e-07!659;UBERON:0003080!1.99e-07!42;UBERON:0004733!3.20e-07!12;UBERON:0002028!3.20e-07!12;UBERON:0007277!3.20e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0010523;5.59e-16;3!UBERON:0001915;5.59e-16;3!UBERON:0001982;5.59e-16;3!UBERON:0001905;2.92e-12;2!UBERON:0002757;2.92e-12;2!UBERON:0010134;2.92e-12;2!UBERON:0005408;2.92e-12;2!UBERON:0001899;2.92e-12;2!UBERON:0005090;4.05e-12;2!UBERON:0001630;4.05e-12;2!UBERON:0000341;2.60e-11;2!UBERON:0001723;5.22e-08;3!UBERON:0001033;5.22e-08;3!UBERON:0003513;4.27e-07;7!UBERON:0002426;6.58e-07;1!UBERON:0003831;6.58e-07;1!UBERON:0003898;6.58e-07;1!UBERON:0004830;6.58e-07;1!UBERON:0003830;6.58e-07;1!UBERON:0005175;6.58e-07;1!UBERON:0001774;6.58e-07;1!UBERON:0001103;6.58e-07;1!UBERON:0001389;7.15e-07;1!UBERON:0000026;7.15e-07;1!UBERON:0008784;7.15e-07;1!UBERON:0006058;7.15e-07;1!UBERON:0003663;7.15e-07;1!UBERON:0004256;7.15e-07;1!UBERON:0004708;7.15e-07;1!UBERON:0002101;7.15e-07;1!UBERON:0004709;7.15e-07;1!UBERON:0002529;7.15e-07;1!UBERON:0010538;7.15e-07;1!UBERON:0003661;7.15e-07;1!UBERON:0010890;7.15e-07;1!UBERON:0002471;7.15e-07;1!UBERON:0001383;7.15e-07;1!UBERON:0010758;7.15e-07;1!UBERON:0010707;7.15e-07;1!UBERON:0000978;7.15e-07;1!UBERON:0002103;7.15e-07;1!UBERON:0001665;7.15e-07;1!UBERON:0003823;7.15e-07;1!UBERON:0000154;7.15e-07;1!UBERON:0010709;7.15e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010523,6.20e-16,3;UBERON:0001915,6.20e-16,3;UBERON:0001982,6.20e-16,3;UBERON:0001905,3.00e-12,2;UBERON:0002757,3.00e-12,2;UBERON:0010134,3.00e-12,2;UBERON:0005408,3.00e-12,2;UBERON:0001899,3.00e-12,2;UBERON:0005090,3.94e-12,2;UBERON:0001630,3.94e-12,2;UBERON:0000341,2.67e-11,2;UBERON:0001723,4.87e-08,3;UBERON:0001033,4.87e-08,3;UBERON:0010056,4.87e-08,3;UBERON:0003513,4.32e-07,7;UBERON:0002426,6.59e-07,1;UBERON:0003831,6.59e-07,1;UBERON:0003898,6.59e-07,1;UBERON:0004830,6.59e-07,1;UBERON:0003830,6.59e-07,1;UBERON:0005175,6.59e-07,1;UBERON:0001774,6.59e-07,1;UBERON:0001103,6.59e-07,1;UBERON:0010084,6.59e-07,1;UBERON:0005418,6.96e-07,1;UBERON:0001389,6.96e-07,1;UBERON:0000026,6.96e-07,1;UBERON:0008784,6.96e-07,1;UBERON:0006058,6.96e-07,1;UBERON:0003663,6.96e-07,1;UBERON:0004256,6.96e-07,1;UBERON:0004708,6.96e-07,1;UBERON:0002101,6.96e-07,1;UBERON:0004709,6.96e-07,1;UBERON:0002529,6.96e-07,1;UBERON:0010538,6.96e-07,1;UBERON:0003661,6.96e-07,1;UBERON:0010890,6.96e-07,1;UBERON:0002471,6.96e-07,1;UBERON:0001383,6.96e-07,1;UBERON:0004357,6.96e-07,1;UBERON:0004347,6.96e-07,1;UBERON:0005420,6.96e-07,1;UBERON:0005732,6.96e-07,1;UBERON:0010758,6.96e-07,1;UBERON:0010707,6.96e-07,1;UBERON:0000978,6.96e-07,1;UBERON:0002103,6.96e-07,1;UBERON:0001665,6.96e-07,1;UBERON:0003823,6.96e-07,1;UBERON:0000154,6.96e-07,1;UBERON:0010709,6.96e-07,1;UBERON:0005733,6.96e-07,1;UBERON:0005730,6.96e-07,1 | |||
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|short_description=p2@LRRC38 | |short_description=p2@LRRC38 | ||
}} | }} |
Latest revision as of 15:38, 16 September 2015
Short description: | p2@LRRC38 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LRRC38_5end |
Coexpression cluster: | C24_pineal_eye_retina_retinoblastoma_medulloblastoma_small_cerebral |
Association with transcript: | 0bp_to_NM_001010847, uc001avb.2_5end |
EntrezGene: | LRRC38 |
HGNC: | 27005 |
UniProt: | Q5VT99 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
capillary endothelial cell | 6.20e-16 | 3 |
Ontology term | p-value | n |
---|---|---|
papillary adenocarcinoma | 8.67e-07 | 1 |