FFCP PHASE1:Hg19::chr9:139702363..139702410,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55684 | |EntrezGene=55684 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24703 | |HGNC=24703 | ||
|TSSclassifier=strong | |||
|UniProt=C6K8I4,C9JJY3,A8QVZ7,Q3YEC7 | |UniProt=C6K8I4,C9JJY3,A8QVZ7,Q3YEC7 | ||
|association_with_transcript=0bp_to_ENST00000371663,ENST00000371671,ENST00000371673,NM_001173988,NM_001173989,NM_024718_5end | |association_with_transcript=0bp_to_ENST00000371663,ENST00000371671,ENST00000371673,NM_001173988,NM_001173989,NM_024718_5end | ||
|cluster_id=chr9:139702363..139702410,+ | |||
|description=CAGE_peak_1_at_C9orf86_5end | |description=CAGE_peak_1_at_C9orf86_5end | ||
|id=chr9:139702363..139702410,+ | |id=chr9:139702363..139702410,+ | ||
|ontology_enrichment_celltype=CL:0002321!1.70e-15!248;CL:0000220!2.46e-15!246;CL:0000066!8.83e-12!254;CL:0002078!1.82e-07!44;CL:1000449!2.82e-07!16;CL:0000222!3.30e-07!119;CL:0000115!4.83e-07!35;CL:0000071!7.77e-07!18;CL:0002546!7.77e-07!18;CL:0000076!9.13e-07!62 | |ontology_enrichment_celltype=CL:0002321!1.70e-15!248;CL:0000220!2.46e-15!246;CL:0000066!8.83e-12!254;CL:0002078!1.82e-07!44;CL:1000449!2.82e-07!16;CL:0000222!3.30e-07!119;CL:0000115!4.83e-07!35;CL:0000071!7.77e-07!18;CL:0002546!7.77e-07!18;CL:0000076!9.13e-07!62 | ||
|ontology_enrichment_celltype_v019=CL:1000449;1.98e-08;15!CL:0002681;4.40e-07;12!CL:0002584;4.40e-07;12!CL:0000071;7.77e-07;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0002321,1.94e-15,250;CL:0000066,4.36e-12,253;CL:1000449,1.96e-08,15;CL:0002078,8.37e-08,45;CL:0000115,2.16e-07,36;CL:0000222,3.88e-07,121;CL:0002681,4.36e-07,12;CL:0002584,4.36e-07,12;CL:0000071,7.77e-07,18;CL:0002546,7.77e-07,18 | |||
|ontology_enrichment_development_v019=CL:0002546;7.77e-07;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!3.25e-16!312;UBERON:0000483!3.43e-16!309;UBERON:0000025!1.43e-12!194;UBERON:0004111!1.30e-11!241;UBERON:0000475!2.85e-10!365;UBERON:0000481!2.02e-09!347;UBERON:0000064!2.09e-08!219;UBERON:0000924!5.76e-08!173;UBERON:0006601!5.76e-08!173;UBERON:0003914!9.33e-08!118;UBERON:0004121!1.38e-07!169;UBERON:0000487!1.54e-07!22;UBERON:0000073!2.04e-07!94;UBERON:0001016!2.04e-07!94;UBERON:0004211!2.82e-07!16;UBERON:0001285!2.82e-07!16;UBERON:0007684!2.82e-07!16;UBERON:0003220!2.82e-07!16;UBERON:0004208!2.82e-07!16;UBERON:0002346!3.84e-07!90;UBERON:0000477!6.41e-07!286;UBERON:0005743!6.92e-07!86;UBERON:0001986!7.77e-07!18;UBERON:0004638!7.77e-07!18;UBERON:0004852!7.77e-07!18;UBERON:0006555!8.26e-07!17;UBERON:0005103!8.26e-07!17;UBERON:0000083!8.26e-07!17;UBERON:0009201!8.26e-07!17;UBERON:0004819!8.26e-07!17;UBERON:0006553!8.26e-07!17;UBERON:0003074!8.26e-07!17;UBERON:0003060!8.26e-07!17;UBERON:0003075!9.34e-07!86;UBERON:0007284!9.34e-07!86 | |ontology_enrichment_uberon=UBERON:0000119!3.25e-16!312;UBERON:0000483!3.43e-16!309;UBERON:0000025!1.43e-12!194;UBERON:0004111!1.30e-11!241;UBERON:0000475!2.85e-10!365;UBERON:0000481!2.02e-09!347;UBERON:0000064!2.09e-08!219;UBERON:0000924!5.76e-08!173;UBERON:0006601!5.76e-08!173;UBERON:0003914!9.33e-08!118;UBERON:0004121!1.38e-07!169;UBERON:0000487!1.54e-07!22;UBERON:0000073!2.04e-07!94;UBERON:0001016!2.04e-07!94;UBERON:0004211!2.82e-07!16;UBERON:0001285!2.82e-07!16;UBERON:0007684!2.82e-07!16;UBERON:0003220!2.82e-07!16;UBERON:0004208!2.82e-07!16;UBERON:0002346!3.84e-07!90;UBERON:0000477!6.41e-07!286;UBERON:0005743!6.92e-07!86;UBERON:0001986!7.77e-07!18;UBERON:0004638!7.77e-07!18;UBERON:0004852!7.77e-07!18;UBERON:0006555!8.26e-07!17;UBERON:0005103!8.26e-07!17;UBERON:0000083!8.26e-07!17;UBERON:0009201!8.26e-07!17;UBERON:0004819!8.26e-07!17;UBERON:0006553!8.26e-07!17;UBERON:0003074!8.26e-07!17;UBERON:0003060!8.26e-07!17;UBERON:0003075!9.34e-07!86;UBERON:0007284!9.34e-07!86 | ||
|ontology_enrichment_uberon_v019=UBERON:0006555;1.98e-08;15!UBERON:0004819;1.98e-08;15!UBERON:0001285;1.98e-08;15!UBERON:0007684;1.98e-08;15!UBERON:0000490;5.49e-08;33!UBERON:0000487;1.50e-07;22!UBERON:0000353;1.66e-07;15!UBERON:0006554;3.24e-07;30!UBERON:0001008;3.24e-07;30!UBERON:0001225;4.40e-07;12!UBERON:0008987;4.40e-07;12!UBERON:0004638;7.77e-07;18!UBERON:0001986;7.77e-07;18!UBERON:0004852;7.77e-07;18!UBERON:0002113;9.60e-07;24!UBERON:0011143;9.60e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000119,2.92e-16,309;UBERON:0000483,3.07e-16,306;UBERON:0000025,6.06e-13,192;UBERON:0004111,9.96e-12,240;UBERON:0004211,1.96e-08,15;UBERON:0009773,1.96e-08,15;UBERON:0001231,1.96e-08,15;UBERON:0001285,1.96e-08,15;UBERON:0007684,1.96e-08,15;UBERON:0004208,1.96e-08,15;UBERON:0003914,4.24e-08,117;UBERON:0010371,4.43e-08,104;UBERON:0006555,7.37e-08,16;UBERON:0004819,7.37e-08,16;UBERON:0004121,1.05e-07,171;UBERON:0000924,1.05e-07,171;UBERON:0006601,1.05e-07,171;UBERON:0000487,1.54e-07,22;UBERON:0002346,1.61e-07,86;UBERON:0000353,1.63e-07,15;UBERON:0003075,3.96e-07,82;UBERON:0007284,3.96e-07,82;UBERON:0001016,3.99e-07,89;UBERON:0001225,4.36e-07,12;UBERON:0008987,4.36e-07,12;UBERON:0004638,7.77e-07,18;UBERON:0001986,7.77e-07,18;UBERON:0004852,7.77e-07,18;UBERON:0002100,8.96e-07,199 | |||
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| ||
|short_description=p1@C9orf86 | |short_description=p1@C9orf86 | ||
}} | }} |
Latest revision as of 13:37, 16 September 2015
Short description: | p1@C9orf86 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_C9orf86_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000371663, ENST00000371671, ENST00000371673, NM_001173988, NM_001173989, NM_024718_5end |
EntrezGene: | C9orf86 |
HGNC: | 24703 |
UniProt: | C6K8I4C9JJY3A8QVZ7Q3YEC7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 1.94e-15 | 250 |
epithelial cell | 4.36e-12 | 253 |
epithelial cell of nephron | 1.96e-08 | 15 |
meso-epithelial cell | 8.37e-08 | 45 |
endothelial cell | 2.16e-07 | 36 |
mesodermal cell | 3.88e-07 | 121 |
kidney cortical cell | 4.36e-07 | 12 |
renal cortical epithelial cell | 4.36e-07 | 12 |
blood vessel endothelial cell | 7.77e-07 | 18 |
embryonic blood vessel endothelial progenitor cell | 7.77e-07 | 18 |
Ontology term | p-value | n |
---|---|---|
cell layer | 2.92e-16 | 309 |
epithelium | 3.07e-16 | 306 |
tube | 6.06e-13 | 192 |
anatomical conduit | 9.96e-12 | 240 |
nephron epithelium | 1.96e-08 | 15 |
renal tubule | 1.96e-08 | 15 |
nephron tubule | 1.96e-08 | 15 |
nephron | 1.96e-08 | 15 |
uriniferous tubule | 1.96e-08 | 15 |
nephrogenic mesenchyme | 1.96e-08 | 15 |
epithelial tube | 4.24e-08 | 117 |
ecto-epithelium | 4.43e-08 | 104 |
excretory tube | 7.37e-08 | 16 |
kidney epithelium | 7.37e-08 | 16 |
ectoderm-derived structure | 1.05e-07 | 171 |
ectoderm | 1.05e-07 | 171 |
presumptive ectoderm | 1.05e-07 | 171 |
simple squamous epithelium | 1.54e-07 | 22 |
neurectoderm | 1.61e-07 | 86 |
parenchyma | 1.63e-07 | 15 |
neural plate | 3.96e-07 | 82 |
presumptive neural plate | 3.96e-07 | 82 |
nervous system | 3.99e-07 | 89 |
cortex of kidney | 4.36e-07 | 12 |
renal parenchyma | 4.36e-07 | 12 |
blood vessel endothelium | 7.77e-07 | 18 |
endothelium | 7.77e-07 | 18 |
cardiovascular system endothelium | 7.77e-07 | 18 |
trunk | 8.96e-07 | 199 |