FFCP PHASE1:Hg19::chr1:235813290..235813323,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2786 | |EntrezGene=2786 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4407 | |HGNC=4407 | ||
|TSSclassifier=strong | |||
|UniProt=P50150,B1APZ0 | |UniProt=P50150,B1APZ0 | ||
|association_with_transcript=0bp_to_ENST00000391854,NM_001098722,uc001hxe.3_5end | |association_with_transcript=0bp_to_ENST00000391854,NM_001098722,uc001hxe.3_5end | ||
|cluster_id=chr1:235813290..235813323,- | |||
|coexpression_cluster_id=C1472 | |||
|description=CAGE_peak_2_at_GNG4_5end | |description=CAGE_peak_2_at_GNG4_5end | ||
|id=chr1:235813290..235813323,- | |id=chr1:235813290..235813323,- | ||
|ontology_enrichment_celltype=CL:0002319!2.99e-12!25;CL:0000047!5.68e-08!8 | |ontology_enrichment_celltype=CL:0002319!2.99e-12!25;CL:0000047!5.68e-08!8 | ||
|ontology_enrichment_celltype_v019=CL:0002319;3.81e-13;25!CL:0000540;9.08e-11;6!CL:0000404;9.08e-11;6!CL:0002322;2.39e-08;5!CL:0002321;6.04e-08;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,2.87e-13,8;CL:0002319,5.19e-13,25;CL:0000540,8.35e-11,6;CL:0000031,8.35e-11,6;CL:0000404,8.35e-11,6;CL:0000133,6.54e-09,59;CL:0002322,2.48e-08,5 | |||
|ontology_enrichment_development_v019=CL:0000031;9.08e-11;6 | |||
|ontology_enrichment_disease=DOID:0050687!2.54e-13!143;DOID:162!5.71e-10!235;DOID:14566!2.09e-09!239;DOID:3095!3.24e-09!22;DOID:2994!3.24e-09!22;DOID:171!6.32e-07!10 | |ontology_enrichment_disease=DOID:0050687!2.54e-13!143;DOID:162!5.71e-10!235;DOID:14566!2.09e-09!239;DOID:3095!3.24e-09!22;DOID:2994!3.24e-09!22;DOID:171!6.32e-07!10 | ||
|ontology_enrichment_disease_v019=DOID:171;4.10e-10;10!DOID:3095;2.79e-08;22!DOID:2994;2.79e-08;22!DOID:169;6.85e-08;6 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,8.60e-13,143;DOID:171,5.29e-10,10;DOID:162,2.13e-08,235;DOID:3095,2.73e-08,22;DOID:2994,2.73e-08,22;DOID:14566,6.40e-08,239;DOID:169,6.93e-08,6;DOID:305,2.68e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0000073!3.25e-32!94;UBERON:0001016!3.25e-32!94;UBERON:0005743!2.36e-30!86;UBERON:0001017!1.91e-29!82;UBERON:0000955!1.26e-21!69;UBERON:0006238!1.26e-21!69;UBERON:0001049!2.17e-21!57;UBERON:0005068!2.17e-21!57;UBERON:0006241!2.17e-21!57;UBERON:0007135!2.17e-21!57;UBERON:0000924!2.47e-18!173;UBERON:0006601!2.47e-18!173;UBERON:0002346!2.70e-18!90;UBERON:0002616!1.48e-17!59;UBERON:0004121!1.15e-16!169;UBERON:0003075!2.31e-16!86;UBERON:0007284!2.31e-16!86;UBERON:0002780!3.01e-15!41;UBERON:0001890!3.01e-15!41;UBERON:0006240!3.01e-15!41;UBERON:0003080!1.44e-14!42;UBERON:0002020!5.89e-14!34;UBERON:0003528!5.89e-14!34;UBERON:0001893!5.89e-14!34;UBERON:0002791!1.84e-13!33;UBERON:0001869!4.90e-13!32;UBERON:0000153!9.73e-13!129;UBERON:0007811!9.73e-13!129;UBERON:0000033!2.10e-12!123;UBERON:0003056!1.64e-10!61;UBERON:0000956!1.65e-10!25;UBERON:0000203!1.65e-10!25;UBERON:0007023!1.59e-09!115;UBERON:0001950!1.66e-09!20;UBERON:0002619!3.16e-09!22;UBERON:0003076!3.27e-08!15;UBERON:0003057!3.27e-08!15;UBERON:0004732!1.61e-07!13;UBERON:0004733!5.55e-07!12;UBERON:0002028!5.55e-07!12;UBERON:0007277!5.55e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;9.79e-11;49!UBERON:0002780;2.01e-10;41!UBERON:0001890;2.01e-10;41!UBERON:0001869;9.01e-10;32!UBERON:0001893;9.50e-10;34!UBERON:0000073;2.27e-09;53!UBERON:0002616;2.27e-09;53!UBERON:0001016;2.77e-09;83!UBERON:0002791;4.98e-09;32!UBERON:0003528;9.22e-09;34!UBERON:0002020;9.22e-09;34!UBERON:0001017;6.81e-08;75!UBERON:0000955;8.78e-08;68!UBERON:0000956;9.49e-08;25!UBERON:0000203;9.49e-08;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,9.46e-26,89;UBERON:0001017,2.78e-22,81;UBERON:0011216,1.87e-16,223;UBERON:0001049,2.58e-14,56;UBERON:0005068,2.58e-14,56;UBERON:0006241,2.58e-14,56;UBERON:0007135,2.58e-14,56;UBERON:0000955,2.98e-14,68;UBERON:0006238,2.98e-14,68;UBERON:0000073,3.04e-14,53;UBERON:0002616,3.04e-14,53;UBERON:0004121,3.77e-13,171;UBERON:0000924,3.77e-13,171;UBERON:0006601,3.77e-13,171;UBERON:0002780,4.06e-13,41;UBERON:0001890,4.06e-13,41;UBERON:0003080,4.06e-13,41;UBERON:0006240,4.06e-13,41;UBERON:0002346,2.29e-11,86;UBERON:0001893,3.50e-11,34;UBERON:0001869,7.44e-11,32;UBERON:0003528,4.27e-10,34;UBERON:0002020,4.27e-10,34;UBERON:0003075,1.02e-09,82;UBERON:0007284,1.02e-09,82;UBERON:0002791,1.13e-09,32;UBERON:0003056,1.72e-09,61;UBERON:0010371,4.85e-08,104;UBERON:0000956,1.08e-07,25;UBERON:0000203,1.08e-07,25 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0.655324116390517,0.263766978228454,0,0.662794751455832,0,0,0,0,2.09305798730539,0.816002764977012,0.940364164434263,0.572471974262113,1.36874425072884,1.25542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0.645484683583826,0,0,0.272906150057846,0,0.612167784741805,0.641858054152187,0.639337125799041,0,0,0,0.290209238628584,0.56738522469114,0.622822248995575,0.251248665256743,0,0.217188844705117,0.605399502633369,0,0.316462387440884,0,0,0.209658645508376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.96513985737078,1.12101712596307,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0.255725123687061,0,0,0,0,0,0.0945348171640679,0,0,0.72038491523742,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151357427644931,0,0.234321431833797,0,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0.168336113954066,0.125118519871964,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.14710600840624,5.03613119621644,3.48581828608555,2.90250954043037,5.04641701751257,6.20461510428911,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,1.47008711385542,0,0,0,3.97316789473185,2.21379189377604,0,0,0,0,0,0,0,0,1.73895607462615,0,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0.102827492703324,0,0,0,0,0.22001485746285,0,0,0,0,0,0.514414748524284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0.215627574859517,0.128343036279748,1.52456774533478,7.8083912314573,22.4253755705532,10.7210409813983,15.3105300396759,0,0,0,0.613457458595699,0,0.271265023699736,0.207970861530807,0,0,0,0,0,0,0,0.184369168541703,0,0.195801157462741,0.343143423810856,0,0,0,1.81876542867756,1.66435439510497,3.93107381328584,0,0,0.280660094433074,0,0,0,0,0,0,0,0,0,4.10922128611516,0,0,0.114814448164607,0,0,0,0.0770153371044148,0,0,0.105551628892876,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0.256450125116389,0.328014645699706,0.325378394664303,0,0.732555718546747,0.742585499285292,0,0,0,0,0,0,0,0,0,0.170453254832202,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0.507447609232169,0,0,0.238231775457789,0,0,0,0,1.38871292465715,0,0,2.22963810150862,0,0,1.75368900001705,0.997896857164083,0,0,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0.671028323677248,0.667396566847634,0,0,0,0.540911356951966,0,0,0,0,1.09224469574562,0,0.852408440419239,0,0,0,0.994147647766298,0.984685914873589,0,0,0,0.19924798825107,0,6.55025144421118,1.32949287252801,0,0,0,0,0,0,0,0,0.969332746095218,0.834912883456661,13.9729658600836,0,0,0,2.61724931056649,0,1.89110145414349,14.823965049383,2.04123229368278,9.37574972639778,0.885741385813839,3.0149109656352,4.5774520895125,0.331737779793674,1.77328571372128,1.09692698576986,0,0.139423744278603,0.384751292518985,0.113942055847001,0.46112780877612,0.179515288819544,2.60753692612819,0,0,0.533034776018635,0,0.784901281975124,0,0,0,0,0,0,0.421996129056054,0,0.706765357169704,0.432777279484182,0,0.884575645033392,0.611030144933625,4.15129580152871,3.33622635155558,3.75919018219639,1.55022605855557,0,2.57690890297873,0,1.17398771359254,0,0,0,6.42752799424029,0.189559738885464,7.21552413189564,1.9700756365477,1.32930774541437,0.661983911750998,0,0,2.27687636823834,0.138674673013139,0,1.37189356380129,1.56706571844725,0,0,0,0,0,0.581934098930517,1.5003541537555,0.677942222341597,0.137041924646751,0.596143835108969,2.15256706249988,0,0.240476460754601,0,2.99714414373195,0.144090417154106,0.916292769327325,9.26612988454609,0.432164393964449,0,0,1.22313785466253,0.732219924186332,0.509991088181609,0,0,1.50595916781192,1.27746588066972,0,0.262887354279314,0,0,0,1.59743200399193,0,0,0.0671834724867263,0,2.32991899054908,6.53900413149956,7.91192240459198,5.45968705218898,0.196854963029498,0,0,1.22583065500418,4.98334760241559,8.5274450690285,5.40072439437941,0.449947783103001,0,2.91597871958518,2.34804281319486,0.472834243795189,0.157363764404994,0.105600336519406,0.179287339332845,3.45447355175002,0,0,0,0,0,0,0,0,0.340776043570843,1.24643300672138,0,1.32506888912221,0.904980694530854,2.38018683136842,0.171086837884329,0.704815022316672,0,0.157204305099666,0,0,1.18566979138767,0,0,0,0,0,0,1.72759505875258,0.886068179966986,0.610131324509816,0.500763722825999,0.573409195690071,0.998361463831671,1.24192805882767,2.49027542885215,0.124980407962107,0.303298235083296,1.7127920012698,0,13.5817122683996,11.0139981744227,0,0,0,0,0,0,0,0,0.15543720058278,0,0.159296767163702,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.963099152036517,0.214441591374926,1.04397716786085,0.453411851024545,0.694567422971502,0.244736704506468,0.179088841081487,0.926404341482917,1.31570429747224,0.176689145945881,0,1.35153952522458,0.256241518587947,0,0.607719912354764,0.829550616910385,0,0,0.163565394255844,0.327609848846413,0,0,0,0.3200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| ||
|short_description=p2@GNG4 | |short_description=p2@GNG4 | ||
}} | }} |
Latest revision as of 12:47, 16 September 2015
Short description: | p2@GNG4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_GNG4_5end |
Coexpression cluster: | C1472_nonsmall_neuroblastoma_small_tubular_carcinoid_smallcell_merkel |
Association with transcript: | 0bp_to_ENST00000391854, NM_001098722, uc001hxe.3_5end |
EntrezGene: | GNG4 |
HGNC: | 4407 |
UniProt: | P50150B1APZ0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 2.87e-13 | 8 |
neural cell | 5.19e-13 | 25 |
neuron | 8.35e-11 | 6 |
neuroblast | 8.35e-11 | 6 |
electrically signaling cell | 8.35e-11 | 6 |
neurectodermal cell | 6.54e-09 | 59 |
embryonic stem cell | 2.48e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
nervous system | 9.46e-26 | 89 |
central nervous system | 2.78e-22 | 81 |
organ system subdivision | 1.87e-16 | 223 |
neural tube | 2.58e-14 | 56 |
neural rod | 2.58e-14 | 56 |
future spinal cord | 2.58e-14 | 56 |
neural keel | 2.58e-14 | 56 |
brain | 2.98e-14 | 68 |
future brain | 2.98e-14 | 68 |
regional part of nervous system | 3.04e-14 | 53 |
regional part of brain | 3.04e-14 | 53 |
ectoderm-derived structure | 3.77e-13 | 171 |
ectoderm | 3.77e-13 | 171 |
presumptive ectoderm | 3.77e-13 | 171 |
regional part of forebrain | 4.06e-13 | 41 |
forebrain | 4.06e-13 | 41 |
anterior neural tube | 4.06e-13 | 41 |
future forebrain | 4.06e-13 | 41 |
neurectoderm | 2.29e-11 | 86 |
telencephalon | 3.50e-11 | 34 |
cerebral hemisphere | 7.44e-11 | 32 |
brain grey matter | 4.27e-10 | 34 |
gray matter | 4.27e-10 | 34 |
neural plate | 1.02e-09 | 82 |
presumptive neural plate | 1.02e-09 | 82 |
regional part of telencephalon | 1.13e-09 | 32 |
pre-chordal neural plate | 1.72e-09 | 61 |
ecto-epithelium | 4.85e-08 | 104 |
cerebral cortex | 1.08e-07 | 25 |
pallium | 1.08e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 8.60e-13 | 143 |
neuroectodermal tumor | 5.29e-10 | 10 |
cancer | 2.13e-08 | 235 |
germ cell and embryonal cancer | 2.73e-08 | 22 |
germ cell cancer | 2.73e-08 | 22 |
disease of cellular proliferation | 6.40e-08 | 239 |
neuroendocrine tumor | 6.93e-08 | 6 |
carcinoma | 2.68e-07 | 106 |