FFCP PHASE1:Hg19::chr9:139096968..139096979,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=8022 | |EntrezGene=8022 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6595 | |HGNC=6595 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UBR4,F1T0D5 | |UniProt=Q9UBR4,F1T0D5 | ||
|association_with_transcript=-13bp_to_ENST00000371748,NM_178138,uc004cha.2_5end | |association_with_transcript=-13bp_to_ENST00000371748,NM_178138,uc004cha.2_5end | ||
|cluster_id=chr9:139096968..139096979,- | |||
|coexpression_cluster_id=C171 | |coexpression_cluster_id=C171 | ||
|description=CAGE_peak_2_at_LHX3_5end | |description=CAGE_peak_2_at_LHX3_5end | ||
|id=chr9:139096968..139096979,- | |id=chr9:139096968..139096979,- | ||
|ontology_enrichment_celltype=CL:0000242!1.30e-37!2;CL:0000312!1.05e-15!5;CL:0000240!2.95e-13!6;CL:0000311!2.95e-13!6;CL:0000079!2.95e-13!6;CL:0000237!2.95e-13!6;CL:0000036!2.95e-13!6;CL:0000357!2.95e-13!6;CL:0000114!2.95e-13!6;CL:0000362!3.52e-10!8;CL:0000095!2.44e-09!17;CL:0000123!2.44e-09!17;CL:0002319!9.86e-07!25 | |ontology_enrichment_celltype=CL:0000242!1.30e-37!2;CL:0000312!1.05e-15!5;CL:0000240!2.95e-13!6;CL:0000311!2.95e-13!6;CL:0000079!2.95e-13!6;CL:0000237!2.95e-13!6;CL:0000036!2.95e-13!6;CL:0000357!2.95e-13!6;CL:0000114!2.95e-13!6;CL:0000362!3.52e-10!8;CL:0000095!2.44e-09!17;CL:0000123!2.44e-09!17;CL:0002319!9.86e-07!25 | ||
|ontology_enrichment_celltype_v019=CL:0000123;1.13e-57;2!CL:0000242;1.13e-57;2!CL:0000312;8.09e-24;5!CL:0000240;4.86e-20;6!CL:0000311;4.86e-20;6!CL:0000079;4.86e-20;6!CL:0000237;4.86e-20;6!CL:0000095;3.02e-14;17!CL:0000362;1.02e-13;9!CL:0002319;3.06e-10;25!CL:0002159;3.58e-09;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,1.13e-57,2;CL:0000312,8.09e-24,5;CL:0000240,4.86e-20,6;CL:0000311,4.86e-20,6;CL:0000079,4.86e-20,6;CL:0000237,4.86e-20,6;CL:0000036,4.86e-20,6;CL:0000357,4.86e-20,6;CL:0000114,4.86e-20,6;CL:0000095,3.02e-14,17;CL:0000123,3.02e-14,17;CL:0000362,1.02e-13,9;CL:0002319,3.06e-10,25;CL:0002159,3.58e-09,14 | |||
|ontology_enrichment_development_v019=CL:0000357;4.86e-20;6!CL:0000114;4.86e-20;6!UBERON:0003056;8.17e-11;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003296!4.64e-72!4;UBERON:0010133!4.64e-72!4;UBERON:0001894!1.84e-41!7;UBERON:0006222!1.84e-41!7;UBERON:0001905!3.94e-37!2;UBERON:0002757!3.94e-37!2;UBERON:0010134!3.94e-37!2;UBERON:0002784!3.94e-37!2;UBERON:0005408!3.94e-37!2;UBERON:0001899!3.94e-37!2;UBERON:0000007!8.20e-37!2;UBERON:0002336!4.69e-19!1;UBERON:0001018!4.69e-19!1;UBERON:0002473!4.69e-19!1;UBERON:0005340!4.69e-19!1;UBERON:0002316!4.69e-19!1;UBERON:0003544!4.69e-19!1;UBERON:0001020!4.69e-19!1;UBERON:0005970!4.69e-19!1;UBERON:0002437!4.69e-19!1;UBERON:0002368!2.35e-18!35;UBERON:0000949!2.92e-14!45;UBERON:0002530!7.55e-11!59;UBERON:0002780!8.02e-11!41;UBERON:0001890!8.02e-11!41;UBERON:0006240!8.02e-11!41;UBERON:0003080!1.43e-10!42;UBERON:0003056!2.32e-10!61;UBERON:0005162!3.27e-10!2;UBERON:0000122!3.27e-10!2;UBERON:0000955!5.03e-09!69;UBERON:0006238!5.03e-09!69;UBERON:0001049!7.56e-08!57;UBERON:0005068!7.56e-08!57;UBERON:0006241!7.56e-08!57;UBERON:0007135!7.56e-08!57;UBERON:0001017!1.35e-07!82;UBERON:0002616!1.38e-07!59;UBERON:0003075!2.51e-07!86;UBERON:0007284!2.51e-07!86;UBERON:0005743!3.06e-07!86;UBERON:0002346!5.40e-07!90 | |ontology_enrichment_uberon=UBERON:0003296!4.64e-72!4;UBERON:0010133!4.64e-72!4;UBERON:0001894!1.84e-41!7;UBERON:0006222!1.84e-41!7;UBERON:0001905!3.94e-37!2;UBERON:0002757!3.94e-37!2;UBERON:0010134!3.94e-37!2;UBERON:0002784!3.94e-37!2;UBERON:0005408!3.94e-37!2;UBERON:0001899!3.94e-37!2;UBERON:0000007!8.20e-37!2;UBERON:0002336!4.69e-19!1;UBERON:0001018!4.69e-19!1;UBERON:0002473!4.69e-19!1;UBERON:0005340!4.69e-19!1;UBERON:0002316!4.69e-19!1;UBERON:0003544!4.69e-19!1;UBERON:0001020!4.69e-19!1;UBERON:0005970!4.69e-19!1;UBERON:0002437!4.69e-19!1;UBERON:0002368!2.35e-18!35;UBERON:0000949!2.92e-14!45;UBERON:0002530!7.55e-11!59;UBERON:0002780!8.02e-11!41;UBERON:0001890!8.02e-11!41;UBERON:0006240!8.02e-11!41;UBERON:0003080!1.43e-10!42;UBERON:0003056!2.32e-10!61;UBERON:0005162!3.27e-10!2;UBERON:0000122!3.27e-10!2;UBERON:0000955!5.03e-09!69;UBERON:0006238!5.03e-09!69;UBERON:0001049!7.56e-08!57;UBERON:0005068!7.56e-08!57;UBERON:0006241!7.56e-08!57;UBERON:0007135!7.56e-08!57;UBERON:0001017!1.35e-07!82;UBERON:0002616!1.38e-07!59;UBERON:0003075!2.51e-07!86;UBERON:0007284!2.51e-07!86;UBERON:0005743!3.06e-07!86;UBERON:0002346!5.40e-07!90 | ||
|ontology_enrichment_uberon_v019=UBERON:0003296;1.76e-111;4!UBERON:0010133;1.76e-111;4!UBERON:0001894;4.15e-64;7!UBERON:0001905;6.36e-57;2!UBERON:0002757;6.36e-57;2!UBERON:0010134;6.36e-57;2!UBERON:0005408;6.36e-57;2!UBERON:0001899;6.36e-57;2!UBERON:0000007;2.00e-56;2!UBERON:0002784;4.21e-29;4!UBERON:0002368;2.54e-12;33!UBERON:0000949;1.23e-08;43!UBERON:0001003;1.27e-08;15!UBERON:0007376;1.27e-08;15!UBERON:0002780;1.93e-08;41!UBERON:0001890;1.93e-08;41!UBERON:0000955;2.13e-08;68!UBERON:0000966;5.38e-07;5!UBERON:0005388;5.38e-07;5!UBERON:0001802;5.38e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003296,1.76e-111,4;UBERON:0010133,1.76e-111,4;UBERON:0001894,4.15e-64,7;UBERON:0006222,4.15e-64,7;UBERON:0001905,6.36e-57,2;UBERON:0002757,6.36e-57,2;UBERON:0010134,6.36e-57,2;UBERON:0005408,6.36e-57,2;UBERON:0001899,6.36e-57,2;UBERON:0000007,2.00e-56,2;UBERON:0002784,4.21e-29,4;UBERON:0010371,2.04e-13,104;UBERON:0002368,2.34e-13,35;UBERON:0003056,1.05e-11,61;UBERON:0002780,3.23e-11,41;UBERON:0001890,3.23e-11,41;UBERON:0003080,3.23e-11,41;UBERON:0006240,3.23e-11,41;UBERON:0000949,1.67e-10,45;UBERON:0000955,2.09e-10,68;UBERON:0006238,2.09e-10,68;UBERON:0000073,7.90e-09,53;UBERON:0002616,7.90e-09,53;UBERON:0001017,8.05e-09,81;UBERON:0003075,8.05e-09,82;UBERON:0007284,8.05e-09,82;UBERON:0001003,1.27e-08,15;UBERON:0007376,1.27e-08,15;UBERON:0007383,1.27e-08,15;UBERON:0002346,1.99e-08,86;UBERON:0001049,2.18e-08,56;UBERON:0005068,2.18e-08,56;UBERON:0006241,2.18e-08,56;UBERON:0007135,2.18e-08,56;UBERON:0004121,3.72e-08,171;UBERON:0000924,3.72e-08,171;UBERON:0006601,3.72e-08,171;UBERON:0002530,4.07e-08,59;UBERON:0001016,5.54e-08,89 | |||
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|short_description=p2@LHX3 | |short_description=p2@LHX3 | ||
}} | }} |
Latest revision as of 11:37, 16 September 2015
Short description: | p2@LHX3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LHX3_5end |
Coexpression cluster: | C171_merkel_neuroblastoma_pineal_retinoblastoma_carcinoid_small_eye |
Association with transcript: | -13bp_to_ENST00000371748, NM_178138, uc004cha.2_5end |
EntrezGene: | LHX3 |
HGNC: | 6595 |
UniProt: | Q9UBR4F1T0D5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 1.13e-57 | 2 |
keratinocyte | 8.09e-24 | 5 |
stratified squamous epithelial cell | 4.86e-20 | 6 |
keratin accumulating cell | 4.86e-20 | 6 |
stratified epithelial cell | 4.86e-20 | 6 |
keratinizing barrier epithelial cell | 4.86e-20 | 6 |
epithelial fate stem cell | 4.86e-20 | 6 |
stratified epithelial stem cell | 4.86e-20 | 6 |
surface ectodermal cell | 4.86e-20 | 6 |
neuron associated cell | 3.02e-14 | 17 |
neuron associated cell (sensu Vertebrata) | 3.02e-14 | 17 |
epidermal cell | 1.02e-13 | 9 |
neural cell | 3.06e-10 | 25 |
general ecto-epithelial cell | 3.58e-09 | 14 |