FFCP PHASE1:Hg19::chr2:241938091..241938096,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=25992 | |EntrezGene=25992 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24696 | |HGNC=24696 | ||
|TSSclassifier=strong | |||
|UniProt=Q8TER0,B5MEF5 | |UniProt=Q8TER0,B5MEF5 | ||
|association_with_transcript=-158bp_to_ENST00000310397,ENST00000342631,ENST00000401884,ENST00000405547,NM_001080437,uc002wah.1_5end | |association_with_transcript=-158bp_to_ENST00000310397,ENST00000342631,ENST00000401884,ENST00000405547,NM_001080437,uc002wah.1_5end | ||
|cluster_id=chr2:241938091..241938096,+ | |||
|coexpression_cluster_id=C1156 | |||
|description=CAGE_peak_4_at_SNED1_5end | |description=CAGE_peak_4_at_SNED1_5end | ||
|id=chr2:241938091..241938096,+ | |id=chr2:241938091..241938096,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002564;3.74e-10;3!CL:0002559;6.07e-09;5!CL:0000135;7.84e-09;3!CL:0000388;7.84e-09;3!CL:0002552;7.99e-09;5!CL:0002602;2.49e-07;2!CL:0002575;3.30e-07;2!CL:0002561;9.83e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002564,3.73e-10,3;CL:0000135,3.16e-09,3;CL:0000388,3.16e-09,3;CL:0002559,3.53e-09,5;CL:0002552,1.25e-08,5;CL:0002602,2.55e-07,2;CL:0002575,3.23e-07,2;CL:0002561,9.90e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.53e-12!115 | |ontology_enrichment_uberon=UBERON:0007023!1.53e-12!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0004905;2.50e-18;8!UBERON:0000982;2.50e-18;8!UBERON:0004770;2.50e-18;8!UBERON:0011135;8.59e-16;5!UBERON:0002216;8.59e-16;5!UBERON:0011134;8.59e-16;5!UBERON:0002209;8.59e-16;5!UBERON:0002213;8.59e-16;5!UBERON:0007844;8.59e-16;5!UBERON:0011138;8.59e-16;5!UBERON:0001130;8.59e-16;5!UBERON:0001066;8.59e-16;5!UBERON:0001468;8.59e-16;5!UBERON:0002242;3.74e-10;3!UBERON:0002073;6.07e-09;5!UBERON:0007846;7.84e-09;3!UBERON:0000043;7.84e-09;3!UBERON:0007845;7.84e-09;3!UBERON:0006444;2.49e-07;2!UBERON:0001995;2.49e-07;2!UBERON:0004715;2.49e-07;2!UBERON:0005933;9.83e-07;2!UBERON:0005942;9.83e-07;2!UBERON:0005932;9.83e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004905,2.41e-18,8;UBERON:0000982,2.41e-18,8;UBERON:0004770,2.41e-18,8;UBERON:0011135,8.76e-16,5;UBERON:0002216,8.76e-16,5;UBERON:0011134,8.76e-16,5;UBERON:0002209,8.76e-16,5;UBERON:0002213,8.76e-16,5;UBERON:0005856,8.76e-16,5;UBERON:0005866,8.76e-16,5;UBERON:0005863,8.76e-16,5;UBERON:0007844,8.76e-16,5;UBERON:0011138,8.76e-16,5;UBERON:0001130,8.76e-16,5;UBERON:0001066,8.76e-16,5;UBERON:0001468,8.76e-16,5;UBERON:0002242,3.73e-10,3;UBERON:0003068,3.73e-10,3;UBERON:0002328,3.73e-10,3;UBERON:0004880,3.73e-10,3;UBERON:0007846,3.16e-09,3;UBERON:0000043,3.16e-09,3;UBERON:0007845,3.16e-09,3;UBERON:0002073,3.53e-09,5;UBERON:0005086,3.53e-09,5;UBERON:0006444,2.55e-07,2;UBERON:0001995,2.55e-07,2;UBERON:0004715,2.55e-07,2;UBERON:0005933,9.90e-07,2;UBERON:0005942,9.90e-07,2;UBERON:0005932,9.90e-07,2 | |||
|phase1_expression=0.54503513781167,0.428201047781966,0.140954404095971,0,0,0,0,0,4.44015567939725,0,0,0,0,10.2726072956839,14.5814845320283,0,0.602694528023977,0.730310090387373,0,0.246242116153576,1.63200552995402,0,0,0.136874425072884,0,0,0,0,0,0.383829398097213,0.309632246632152,0,0,0,0,0,0,1.10799081706375,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0.47296445977717,0,0,0,0,0,0.449446968890169,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0.633765858935825,0.212604299965044,0,0.112328631146495,0,0,1.71007646244749,0.99458338599545,1.64397738388171,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0.196709770113833,0.393010762749165,0,0,0,0.473447805734733,0,0,0.294605907474837,0,0.270803863765016,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0,0,0,0,0,0,0,0,0.821127996921047,0.201606743224732,0,0.144824403882799,7.31420598941885,0,0,0.361439152384566,0.50133791063589,0.144846518960824,0,0.486634870302636,0,0,0,0.589405839739707,0,0,0,0,0,0,0,0,0.39752481473341,1.72046919021225,0,0.56530794192401,0,0,0.208994966536811,0.516833518338658,0,0.33472061276467,0.402829317109147,0,0,0,0.81014194788176,0,0.44905874525234,0.225222960966644,1.53316637465883,0,0.183201743930407,0,0,0,0.993943903390637,0,0,0.573673241497627,0,0.560677600142307,0,0,1.8672662123986,0.269421344139376,0.490385709340376,0.756787138224657,0.576175924479999,0.937285727335186,0.624320153660641,0,1.04614076386261,0,0,0.140450806702248,1.42907919878425,1.22834317311768,5.16628905878827,1.18800285728205,0.494533858557114,0,0,0.841680569770331,1.25118519871964,0.554128230968366,0,0,0.300476117813194,0,0,0.213557388818567,0.211931901159562,0,0.103052529238439,0.257640540045629,0.18611685633159,0.675105328965065,0,0.252433774244115,0.276149695926898,1.45481451136931,0,0,0.169560592310488,0,0,0,0,0,0,0,0,0,1.56449532329816,1.92972281457866,0,2.78620756819187,2.16563844500876,0,0,0,0,0.217879444092406,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0.977424915930974,0,0,0,0.117408694235822,0,0,0,0,0,0,0.234004265139238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0.224262168690721,0.43596006883328,0.07333828582095,0,7.15312891703765,0,0,0,0.771622122786426,0,0.799266537048298,0.142977993658148,1.62786481617433,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,2.85273810081437,0.434343920002738,1.2328579353023,0.179060963239896,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,19.7533301667815,8.50289885801451,10.5793359242897,0.415941723061614,0.535286966391485,0,0.117141414992713,0.601892199455438,0,0,0,0.368738337083406,0.521301686808497,7.63624514104688,7.20601190002797,0.413536052245775,0.215714200818617,0.106727557803444,0,0,0.30239029332968,0,0,0.280660094433074,0.256278298511402,0,0.160853921143607,0,0,0.532685175939381,0.246381468041427,0,0.116210378459959,0,0,0,0.114814448164607,0,0.131124414959424,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0.0915694648183434,0,0,0,0,0.676695028044854,0.770243085573222,1.38153307253517,0,2.0409846524972,2.75531718437034,0.93749290157711,0.623224249527161,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0,0.372158369359667,0.949138274156178,0.190630193923825,0.511795582622668,4.2793898803392,1.27281299170375,0,0.179872457583315,0,0.353437207037059,0,0,0,0,0,0,0.136499911407986,0,2.26016233240486,1.10273068709225,0,0,1.15755106853338,3.9353685122798,0,0,0,0,0.0982490410131212,0,0,4.85547561184627,5.92730807327823,0.379473173765715,3.84928192269481,0,0,0,0.470719003883896,0,0,0,0,0,0,0,0,0.822724546172388,0,0,0,0,0,0,0,0,0,0,0,0,3.38677732358213,0,0,0,0,0,0.338583555603207,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,1.61158997199083,0,0,0,0,0,0,0,0.281338832821026,0.111308705022906,0,2.53350489753592,1.19548792950642,0.552567831062295,1.76352923497993,0,0,0,0,0,0,0,0,0,0,0.278304294485554,0,0,0.437299999980979,0,0,0,0,0,0,0,0,0.120596438625408,0,1.10579259931225,1.18219047581419,0.219385397153973,0.21787692703798,0,0.769502585037971,0,0,0,0,0,0.0915975934018623,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.530745387020035,0,0,0,0,0.269604531922708,0.802577647298789,0,0,0,0,0,0,0.30607276163049,1.39010475182674,0,0,0.664653872707185,0,0.313932918407225,1.19472429772959,0,0,0,0,0,0.873633341210151,0.171986032471617,0,0,0,0.484945082442097,0,0.677942222341597,0.274083849293502,0,0.189932387867636,0,0,1.06726497369676,0.39961921916426,0,0,0,0,0.248505071130865,0,0,0.104602846312333,0.101998217636322,0,0,0,0,0,0,0.558564802544508,0.458320848023367,4.30723814746088,0.399358000997982,0.429226048136571,0.223171457441873,0.201550417460179,0,0,0,0,0,0,0,1.59045937961861,0.408610218334727,0.160753148465019,0,0,0,0,0.0607495566580247,0,0.315222829196793,0.209818352539992,0,0.179287339332845,0,1.42939065274673,0.662091970365432,0,0,0,0.326587360109409,0,0,0.170388021785422,0.566560457600628,0.146552233678082,0,0.387848869084652,0.13223260174269,0,0,0.106787412567695,0.314408610199332,1.24271716604159,0,0.197611631897944,0,0,1.08803560673895,0.2506898940227,0.919036730290385,0.327872630709804,0,0,0.122026264901963,0,0.57340919569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| ||
|short_description=p4@SNED1 | |short_description=p4@SNED1 | ||
}} | }} |
Latest revision as of 09:19, 16 September 2015
Short description: | p4@SNED1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SNED1_5end |
Coexpression cluster: | C1156_Nucleus_Anulus_Mesenchymal_tenocyte_Pericytes_mesenchymal_Synoviocyte |
Association with transcript: | -158bp_to_ENST00000310397, ENST00000342631, ENST00000401884, ENST00000405547, NM_001080437, uc002wah.1_5end |
EntrezGene: | SNED1 |
HGNC: | 24696 |
UniProt: | Q8TER0B5MEF5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nucleus pulposus cell of intervertebral disc | 3.73e-10 | 3 |
fibrocyte | 3.16e-09 | 3 |
tendon cell | 3.16e-09 | 3 |
hair follicle cell | 3.53e-09 | 5 |
fibroblast of gingiva | 1.25e-08 | 5 |
annulus pulposus cell | 2.55e-07 | 2 |
central nervous system pericyte | 3.23e-07 | 2 |
outer root sheath cell | 9.90e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
articulation | 2.41e-18 | 8 |
skeletal joint | 2.41e-18 | 8 |
articular system | 2.41e-18 | 8 |
intervertebral cartilage | 8.76e-16 | 5 |
symphysis | 8.76e-16 | 5 |
nonsynovial joint | 8.76e-16 | 5 |
fibrous joint | 8.76e-16 | 5 |
cartilaginous joint | 8.76e-16 | 5 |
developing mesenchymal condensation | 8.76e-16 | 5 |
pre-cartilage condensation | 8.76e-16 | 5 |
cartilaginous condensation | 8.76e-16 | 5 |
cartilage element | 8.76e-16 | 5 |
post-cranial axial skeletal system | 8.76e-16 | 5 |
vertebral column | 8.76e-16 | 5 |
intervertebral disk | 8.76e-16 | 5 |
intervertebral joint | 8.76e-16 | 5 |
nucleus pulposus | 3.73e-10 | 3 |
axial mesoderm | 3.73e-10 | 3 |
notochord | 3.73e-10 | 3 |
chordamesoderm | 3.73e-10 | 3 |
dense regular connective tissue | 3.16e-09 | 3 |
tendon | 3.16e-09 | 3 |
regular connective tissue | 3.16e-09 | 3 |
hair follicle | 3.53e-09 | 5 |
hair follicle placode | 3.53e-09 | 5 |
annulus fibrosus | 2.55e-07 | 2 |
fibrocartilage | 2.55e-07 | 2 |
annulus fibrosus disci intervertebralis | 2.55e-07 | 2 |
hair root sheath | 9.90e-07 | 2 |
hair outer root sheath | 9.90e-07 | 2 |
bulb of hair follicle | 9.90e-07 | 2 |