FFCP PHASE1:Hg19::chr13:100638124..100638136,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr13:100638124..100638136,+ to FFCP PHASE1:Hg19::chr13:100638124..100638136,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=7546 | |EntrezGene=7546 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=12873 | |HGNC=12873 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=203bp_to_AF188733_5end | |||
|cluster_id=chr13:100638124..100638136,+ | |||
|coexpression_cluster_id=C1024 | |||
|description=CAGE_peak_7_at_ZIC2_5end | |||
|id=chr13:100638124..100638136,+ | |||
|ontology_enrichment_celltype=CL:0002319!3.08e-11!25;CL:0000133!2.67e-09!59;CL:0000047!9.41e-09!8;CL:0002322!3.99e-08!5 | |||
|ontology_enrichment_celltype_v019=CL:0002322;5.16e-30;5!CL:0002321;1.48e-24;15!CL:0000540;4.91e-17;6!CL:0000404;4.91e-17;6!CL:0000333;1.86e-11;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,2.73e-30,5;CL:0000047,3.72e-19,8;CL:0000540,6.82e-17,6;CL:0000031,6.82e-17,6;CL:0000404,6.82e-17,6;CL:0000133,4.24e-10,59;CL:0000221,5.63e-08,72 | |||
|ontology_enrichment_development_v019=UBERON:0006215;8.94e-20;3!CL:0000031;4.91e-17;6 | |||
|ontology_enrichment_disease=DOID:162!5.15e-19!235;DOID:0050687!5.32e-19!143;DOID:14566!4.42e-18!239;DOID:305!5.09e-11!106;DOID:0050686!4.83e-07!137;DOID:3095!7.02e-07!22;DOID:2994!7.02e-07!22;DOID:171!8.86e-07!10 | |||
|ontology_enrichment_disease_v019=DOID:171;1.50e-21;10!DOID:3095;1.10e-16;22!DOID:2994;1.10e-16;22!DOID:169;1.25e-09;6!DOID:3371;1.61e-07;1!DOID:4549;1.61e-07;1!DOID:5861;1.61e-07;1!DOID:6496;1.61e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:171,1.73e-21,10;DOID:3095,1.15e-16,22;DOID:2994,1.15e-16,22;DOID:169,1.33e-09,6;DOID:3371,1.83e-07,1;DOID:4549,1.83e-07,1;DOID:5861,1.83e-07,1;DOID:6496,1.83e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001017!5.97e-21!82;UBERON:0000073!1.61e-20!94;UBERON:0001016!1.61e-20!94;UBERON:0005743!2.97e-20!86;UBERON:0002346!8.34e-16!90;UBERON:0000955!4.20e-13!69;UBERON:0006238!4.20e-13!69;UBERON:0000924!4.28e-13!173;UBERON:0006601!4.28e-13!173;UBERON:0003075!7.87e-13!86;UBERON:0007284!7.87e-13!86;UBERON:0001049!8.44e-13!57;UBERON:0005068!8.44e-13!57;UBERON:0006241!8.44e-13!57;UBERON:0007135!8.44e-13!57;UBERON:0002616!5.56e-12!59;UBERON:0004121!6.84e-11!169;UBERON:0003076!5.19e-10!15;UBERON:0003057!5.19e-10!15;UBERON:0000033!2.44e-09!123;UBERON:0004733!3.54e-09!12;UBERON:0002028!3.54e-09!12;UBERON:0007277!3.54e-09!12;UBERON:0002680!1.21e-08!9;UBERON:0001895!1.21e-08!9;UBERON:0010092!1.21e-08!9;UBERON:0002037!1.73e-08!6;UBERON:0006215!1.73e-08!6;UBERON:0000153!2.39e-08!129;UBERON:0007811!2.39e-08!129;UBERON:0004732!2.85e-08!13;UBERON:0003056!1.39e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002346;1.32e-14;4!UBERON:0000923;1.32e-14;4!UBERON:0010316;1.32e-14;4!UBERON:0005291;1.32e-14;4!UBERON:0002050;8.65e-12;5!UBERON:0005423;8.65e-12;5!UBERON:0000013;1.86e-11;5!UBERON:0002410;1.86e-11;5!UBERON:0002037;3.83e-10;6!UBERON:0002680;6.68e-07;9!UBERON:0001895;6.68e-07;9!UBERON:0002784;7.94e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,2.00e-11,5;UBERON:0002410,2.00e-11,5;UBERON:0001016,3.65e-10,89;UBERON:0002037,3.72e-10,6;UBERON:0006215,3.72e-10,6;UBERON:0004121,1.21e-07,171;UBERON:0000924,1.21e-07,171;UBERON:0006601,1.21e-07,171;UBERON:0001017,6.48e-07,81;UBERON:0002680,6.55e-07,9;UBERON:0001895,6.55e-07,9;UBERON:0010092,6.55e-07,9;UBERON:0002784,8.19e-07,4 | |||
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| ||
|short_description=p7@ZIC2 | |||
}} | }} |
Latest revision as of 08:03, 16 September 2015
Short description: | p7@ZIC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_ZIC2_5end |
Coexpression cluster: | C1024_Pericytes_cerebellum_neuroblastoma_HES3GFP_iPS_extraskeletal_teratocarcinoma |
Association with transcript: | 203bp_to_AF188733_5end |
EntrezGene: | ZIC2 |
HGNC: | 12873 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 2.73e-30 | 5 |
neuronal stem cell | 3.72e-19 | 8 |
neuron | 6.82e-17 | 6 |
neuroblast | 6.82e-17 | 6 |
electrically signaling cell | 6.82e-17 | 6 |
neurectodermal cell | 4.24e-10 | 59 |
ectodermal cell | 5.63e-08 | 72 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 2.00e-11 | 5 |
autonomic nervous system | 2.00e-11 | 5 |
nervous system | 3.65e-10 | 89 |
cerebellum | 3.72e-10 | 6 |
rhombic lip | 3.72e-10 | 6 |
ectoderm-derived structure | 1.21e-07 | 171 |
ectoderm | 1.21e-07 | 171 |
presumptive ectoderm | 1.21e-07 | 171 |
central nervous system | 6.48e-07 | 81 |
regional part of metencephalon | 6.55e-07 | 9 |
metencephalon | 6.55e-07 | 9 |
future metencephalon | 6.55e-07 | 9 |
regional part of diencephalon | 8.19e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 1.73e-21 | 10 |
germ cell and embryonal cancer | 1.15e-16 | 22 |
germ cell cancer | 1.15e-16 | 22 |
neuroendocrine tumor | 1.33e-09 | 6 |
chondrosarcoma | 1.83e-07 | 1 |
extraosseous chondrosarcoma | 1.83e-07 | 1 |
myxoid chondrosarcoma | 1.83e-07 | 1 |
extraskeletal myxoid chondrosarcoma | 1.83e-07 | 1 |