FFCP PHASE1:Hg19::chr14:79745746..79745762,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9369 | |EntrezGene=9369 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8010 | |HGNC=8010 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000281127_5end | |association_with_transcript=0bp_to_ENST00000281127_5end | ||
|cluster_id=chr14:79745746..79745762,+ | |||
|coexpression_cluster_id=C11 | |coexpression_cluster_id=C11 | ||
|description=CAGE_peak_3_at_NRXN3_5end | |description=CAGE_peak_3_at_NRXN3_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000349;6.25e-09;19!CL:0000077;4.63e-08;19!CL:0002537;8.88e-07;5 | |ontology_enrichment_celltype_v019=CL:0000349;6.25e-09;19!CL:0000077;4.63e-08;19!CL:0002537;8.88e-07;5 | ||
|ontology_enrichment_celltype_v019_2=CL:0000349,6.70e-09,19;CL:0000077,3.11e-08,19;CL:0002537,9.53e-07,5 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:2394!6.32e-07!14 | |ontology_enrichment_disease=DOID:2394!6.32e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;3.79e-07;14!DOID:193;5.39e-07;29 | |ontology_enrichment_disease_v019=DOID:2394;3.79e-07;14!DOID:193;5.39e-07;29 | ||
|ontology_enrichment_disease_v019_2=DOID:2394,3.18e-07,14;DOID:193,5.29e-07,29 | |||
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|ontology_enrichment_uberon_v019=UBERON:0004732;5.01e-09;13!UBERON:0000305;5.89e-09;7!UBERON:0004733;2.28e-08;12!UBERON:0002028;2.28e-08;12!UBERON:0003688;3.82e-08;6!UBERON:0002358;3.82e-08;6!UBERON:0003684;3.82e-08;6!UBERON:0001178;3.82e-08;6!UBERON:0002298;7.09e-08;6!UBERON:0005631;2.78e-07;10!UBERON:0000158;2.78e-07;10!UBERON:0004457;8.09e-07;9!UBERON:0000042;8.09e-07;9 | |ontology_enrichment_uberon_v019=UBERON:0004732;5.01e-09;13!UBERON:0000305;5.89e-09;7!UBERON:0004733;2.28e-08;12!UBERON:0002028;2.28e-08;12!UBERON:0003688;3.82e-08;6!UBERON:0002358;3.82e-08;6!UBERON:0003684;3.82e-08;6!UBERON:0001178;3.82e-08;6!UBERON:0002298;7.09e-08;6!UBERON:0005631;2.78e-07;10!UBERON:0000158;2.78e-07;10!UBERON:0004457;8.09e-07;9!UBERON:0000042;8.09e-07;9 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003076,2.28e-11,15;UBERON:0003057,2.28e-11,15;UBERON:0003075,2.98e-10,82;UBERON:0007284,2.98e-10,82;UBERON:0007023,3.10e-10,114;UBERON:0001049,1.83e-09,56;UBERON:0005068,1.83e-09,56;UBERON:0006241,1.83e-09,56;UBERON:0007135,1.83e-09,56;UBERON:0002346,2.61e-09,86;UBERON:0004732,2.94e-09,13;UBERON:0001017,4.04e-09,81;UBERON:0005631,4.30e-09,14;UBERON:0000158,4.30e-09,14;UBERON:0000305,7.42e-09,7;UBERON:0001016,1.16e-08,89;UBERON:0004733,1.48e-08,12;UBERON:0002028,1.48e-08,12;UBERON:0007277,1.48e-08,12;UBERON:0002298,3.92e-08,6;UBERON:0010371,6.73e-08,104;UBERON:0003688,7.63e-08,6;UBERON:0002358,7.63e-08,6;UBERON:0003684,7.63e-08,6;UBERON:0001178,7.63e-08,6;UBERON:0000073,1.13e-07,53;UBERON:0002616,1.13e-07,53;UBERON:0004871,1.48e-07,8;UBERON:0004121,1.99e-07,171;UBERON:0000924,1.99e-07,171;UBERON:0006601,1.99e-07,171;UBERON:0000955,5.53e-07,68;UBERON:0006238,5.53e-07,68 | |||
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| ||
|short_description=p3@NRXN3 | |short_description=p3@NRXN3 | ||
}} | }} |
Latest revision as of 07:00, 16 September 2015
Short description: | p3@NRXN3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_NRXN3_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | 0bp_to_ENST00000281127_5end |
EntrezGene: | NRXN3 |
HGNC: | 8010 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 6.70e-09 | 19 |
mesothelial cell | 3.11e-08 | 19 |
amnion mesenchymal stem cell | 9.53e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
posterior neural tube | 2.28e-11 | 15 |
chordal neural plate | 2.28e-11 | 15 |
neural plate | 2.98e-10 | 82 |
presumptive neural plate | 2.98e-10 | 82 |
adult organism | 3.10e-10 | 114 |
neural tube | 1.83e-09 | 56 |
neural rod | 1.83e-09 | 56 |
future spinal cord | 1.83e-09 | 56 |
neural keel | 1.83e-09 | 56 |
neurectoderm | 2.61e-09 | 86 |
segmental subdivision of nervous system | 2.94e-09 | 13 |
central nervous system | 4.04e-09 | 81 |
extraembryonic membrane | 4.30e-09 | 14 |
membranous layer | 4.30e-09 | 14 |
amnion | 7.42e-09 | 7 |
nervous system | 1.16e-08 | 89 |
segmental subdivision of hindbrain | 1.48e-08 | 12 |
hindbrain | 1.48e-08 | 12 |
presumptive hindbrain | 1.48e-08 | 12 |
brainstem | 3.92e-08 | 6 |
ecto-epithelium | 6.73e-08 | 104 |
omentum | 7.63e-08 | 6 |
peritoneum | 7.63e-08 | 6 |
abdominal cavity | 7.63e-08 | 6 |
visceral peritoneum | 7.63e-08 | 6 |
regional part of nervous system | 1.13e-07 | 53 |
regional part of brain | 1.13e-07 | 53 |
somatic layer of lateral plate mesoderm | 1.48e-07 | 8 |
ectoderm-derived structure | 1.99e-07 | 171 |
ectoderm | 1.99e-07 | 171 |
presumptive ectoderm | 1.99e-07 | 171 |
brain | 5.53e-07 | 68 |
future brain | 5.53e-07 | 68 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 3.18e-07 | 14 |
reproductive organ cancer | 5.29e-07 | 29 |