FFCP PHASE1:Hg19::chr6:150212029..150212086,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=135250 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16793 | |||
|TSSclassifier=strong | |||
|UniProt=Q3T1D4,A6YF59,Q8TD07 | |||
|association_with_transcript=0bp_to_ENST00000392270,ENST00000529948,uc003qnk.1_5end | |||
|cluster_id=chr6:150212029..150212086,- | |||
|description=CAGE_peak_1_at_RAET1E_5end | |||
|id=chr6:150212029..150212086,- | |||
|ontology_enrichment_celltype=CL:0002076!1.27e-13!43;CL:0000066!2.54e-13!254;CL:0002159!2.15e-09!13;CL:0000223!1.96e-08!59;CL:0002251!8.06e-08!21;CL:0000154!1.92e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0000244;2.46e-12;4!CL:0000731;2.46e-12;4!CL:0000154;2.56e-11;6!CL:0002368;1.46e-09;13!CL:0002623;3.29e-09;3!CL:0002159;3.47e-09;14!CL:0000622;3.78e-09;5!CL:0002076;3.05e-08;42!CL:0000362;9.52e-08;9!CL:0002327;2.42e-07;4!CL:0000575;6.41e-07;2!CL:0002561;6.41e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.24e-22,253;CL:0000244,1.95e-12,4;CL:0000731,1.95e-12,4;CL:0000154,2.94e-11,6;CL:0002076,8.15e-10,42;CL:0002368,1.41e-09,13;CL:0002159,3.78e-09,14;CL:0002623,4.02e-09,3;CL:0000622,4.87e-09,5;CL:0000362,9.67e-08,9;CL:0000076,1.25e-07,63;CL:0002327,2.55e-07,4;CL:0002561,6.90e-07,2;CL:0000575,7.53e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0008947;8.58e-11;29 | |||
|ontology_enrichment_disease=DOID:305!4.24e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.08e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0001004!2.81e-13!72;UBERON:0001737!7.83e-13!9;UBERON:0000065!3.38e-11!53;UBERON:0004119!1.24e-09!169;UBERON:0000925!1.24e-09!169;UBERON:0006595!1.24e-09!169;UBERON:0008947!3.89e-09!38;UBERON:0003258!3.89e-09!38;UBERON:0001557!9.04e-09!19;UBERON:0000072!6.40e-08!46;UBERON:0003102!1.21e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;7.59e-28;9!UBERON:0001557;7.59e-28;9!UBERON:0000065;1.91e-14;44!UBERON:0000072;1.57e-11;37!UBERON:0000365;7.28e-10;5!UBERON:0000486;2.33e-08;12!UBERON:0001004;2.73e-08;65!UBERON:0005910;3.26e-08;6!UBERON:0001911;2.42e-07;4!UBERON:0005933;6.41e-07;2!UBERON:0005942;6.41e-07;2!UBERON:0005932;6.41e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,7.07e-28,9;UBERON:0001004,1.32e-13,74;UBERON:0000065,2.17e-13,54;UBERON:0008947,1.86e-12,38;UBERON:0003258,1.86e-12,38;UBERON:0001557,3.83e-12,19;UBERON:0000365,6.07e-10,5;UBERON:0000072,2.04e-09,47;UBERON:0004119,2.18e-09,160;UBERON:0000925,2.18e-09,160;UBERON:0006595,2.18e-09,160;UBERON:0005910,2.81e-08,6;UBERON:0001911,2.55e-07,4;UBERON:0005333,2.55e-07,4;UBERON:0008425,2.55e-07,4;UBERON:0005311,2.55e-07,4;UBERON:0005933,6.90e-07,2;UBERON:0005942,6.90e-07,2;UBERON:0005932,6.90e-07,2;UBERON:0001041,9.83e-07,87 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0.527533956456907,0,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.10844143144775,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.61439152384566,0.50133791063589,2.60723734129483,0,0,0,0,0.087834785693126,0.327447688744282,7.28590576585084,2.22470665670658,0.649094787309367,0.696518949197069,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.72188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.312160076830321,0.570471821544449,0.448346041655403,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.07633781413317,0.85422955527427,0.635795703478686,0.600182192168805,0.824420233907511,1.54584324027377,1.11670113798954,0.168776332241266,0.0974370051611986,1.00973509697646,0.368199594569197,0,0,0,0,0.386521706326594,0.545492241181669,0,0,0,0,0,0,0,0,0,0,2.3218396401599,7.21879481669586,9.93777120334689,10.6208354749204,11.8095404642906,10.5882213823098,9.36881609597346,10.4399072408883,6.74156540800822,9.61485179114196,7.31019598198142,0,0,0.4115740113314,0,0,0,0,0,0,0,2.63400684980701,4.49607013030478,0.804231779293047,1.48141512253647,0,0,0,0,0,0,0,0,0,0,0,0,0,0.93733833986777,0.16798212819886,0.708875486211932,4.83616022595381,6.1033127087932,3.4504441124869,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.07333828582095,0,0,0,0,0,0.257207374262142,1.41849132023278,0,0,0,0,0,0,0,0.301439377059586,0,1.89948683245908,0,0,0,0,0,1.42636905040718,1.15825045334063,3.49309748335652,0.895304816199478,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0.300946099727719,0,0,0.664225598535437,0,0,0,0.343143423810856,0,0,0,0,0,0,0.248107807818777,0,0,0.128139149255701,0,0,0,0,0,0,0,0,0,0.40101294060657,2.30202472339741,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0.574265537996172,1.30012049207304,1.6068392984416,0,0,0.15350367472613,0.137836572484531,0,0.145016693914229,0,1.33548053470106,2.31398881505369,1.72971060628596,3.95599408733211,2.4277867405332,0,0,0,0,0,0,0,0,0,0.949138274156178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.578775534266688,0,0,0,0,0,0,0,0,3.37772216476263,3.95153871551882,0,0,2.50177493086331,2.01090682660736,0,0.188287601553558,7.31859133541091,1.68471475667626,8.42517291719684,6.20253180558791,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0.891547074219827,0,0,0,0.307160702099232,0,0,0,0.329607748453519,0,0.996239941255349,0.276283915531148,0,0,0,0,0,0.358042349351218,0,0.0986434056369336,0,1.11136990144637,0,0,0,0,0,0,0.1137934482855,0,0.709163045303809,0,0,0,0,0,0,0,0,0,1.52513848926586,4.87983104975112,0.384751292518985,0,0,0,0,0,0,0,0,0.784901281975124,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0,0,0,0.802577647298789,0,0,0.782658475728359,0,0,0,0,0,0,0,0,0,0,0,0,0.416024019039416,0.347119476670262,4.40965788364699,0.0870592065804026,0.52418000472609,0,7.93401916570498,7.30893170861856,7.22616022068241,0.775912131907355,0,0,0,0,0,2.15106521008283,0.0801588202515337,0,0.599428828746391,0,0,0,0,0,5.65665683080309,0.135904206073614,0,0,0,0,0,0,0,0,0.558564802544508,0.458320848023367,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,2.36417121897595,0.629455057619977,0,2.68931008999267,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.42173675768659,0,0.320362237703084,0.157204305099666,0,0,0,0,2.55336503108073,0,0,0,0.327872630709804,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0.235265819698172,0,0,0,0,0,0.189403005275089,0.50313580350515,6.22867855117575,0.457680136793847,0,0,0,0,0,0,0,0,0.521745061811734,0.150257608997218,0.761610424337591,0,0,0,0,0,0.800055529326307,0.343395705182793,0,0,0,0.214441591374926,0,0,0,0,0,5.86722749605847,1.53498834705095,0,0.192914038270915,0.168942440653073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.699397538597222,1.86623178009892,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490738592505128,0.943757786781923,3.4851433719119,0.231051332300676,0.381382095467167,0,0.198916222116275,0.150420656698515,0,0,0,1.47394725759087,0.591424344868181,0,0,0,0,0,0,0.496211178389294,0,0.127762427639595,0.535701835878287,0,0,0,0.266107110487916,0,0,0,0,0.118193840883968,0,0.156986185701028,0,0,0,0,0,0,0,0,0,0,2.27937780579341,8.02376842341565,1.38251932362818,0,0,0,0,0.22910686854405,0.31020638566432,0,0.111855431797792,0,0,0,0.102662806856247,0,0,0.233939463462106,0,0,0,0,0,0,0,0,0,0,0,0,0.4226557275834,0.169927114687817,0,0.0644578879735772,0,0,5.29342307573538,0,0.730336388246517,0,0,0,0,0,0,0,2.31087814315709,0.865253124247578,0,0,0,0,0,0,0,0.303114792872958,0,0,0,0.213233981900981,0,0,0.186224142887574,0,0,0,0.870866991587845,0,0.0673520530145875,0.430333232356058,0,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p1@RAET1E | |||
}} |
Latest revision as of 03:04, 16 September 2015
Short description: | p1@RAET1E |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RAET1E_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000392270, ENST00000529948, uc003qnk.1_5end |
EntrezGene: | RAET1E |
HGNC: | 16793 |
UniProt: | Q3T1D4A6YF59Q8TD07 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.24e-22 | 253 |
transitional epithelial cell | 1.95e-12 | 4 |
urothelial cell | 1.95e-12 | 4 |
protein secreting cell | 2.94e-11 | 6 |
endo-epithelial cell | 8.15e-10 | 42 |
respiratory epithelial cell | 1.41e-09 | 13 |
general ecto-epithelial cell | 3.78e-09 | 14 |
acinar cell of salivary gland | 4.02e-09 | 3 |
acinar cell | 4.87e-09 | 5 |
epidermal cell | 9.67e-08 | 9 |
squamous epithelial cell | 1.25e-07 | 63 |
mammary gland epithelial cell | 2.55e-07 | 4 |
outer root sheath cell | 6.90e-07 | 2 |
corneal epithelial cell | 7.53e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
larynx | 7.07e-28 | 9 |
respiratory system | 1.32e-13 | 74 |
respiratory tract | 2.17e-13 | 54 |
respiratory primordium | 1.86e-12 | 38 |
endoderm of foregut | 1.86e-12 | 38 |
upper respiratory tract | 3.83e-12 | 19 |
urothelium | 6.07e-10 | 5 |
segment of respiratory tract | 2.04e-09 | 47 |
endoderm-derived structure | 2.18e-09 | 160 |
endoderm | 2.18e-09 | 160 |
presumptive endoderm | 2.18e-09 | 160 |
transitional epithelium | 2.81e-08 | 6 |
mammary gland | 2.55e-07 | 4 |
mammary bud | 2.55e-07 | 4 |
mammary ridge | 2.55e-07 | 4 |
mammary placode | 2.55e-07 | 4 |
hair root sheath | 6.90e-07 | 2 |
hair outer root sheath | 6.90e-07 | 2 |
bulb of hair follicle | 6.90e-07 | 2 |
foregut | 9.83e-07 | 87 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.08e-07 | 106 |