FFCP PHASE1:Hg19::chr5:149492904..149492934,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1436 | |EntrezGene=1436 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2433 | |HGNC=2433 | ||
|TSSclassifier=strong | |||
|UniProt=P07333,D6RGW1 | |UniProt=P07333,D6RGW1 | ||
|association_with_transcript=0bp_to_ENST00000286301,ENST00000511344,NM_005211,uc003lrm.2_5end | |association_with_transcript=0bp_to_ENST00000286301,ENST00000511344,NM_005211,uc003lrm.2_5end | ||
|cluster_id=chr5:149492904..149492934,- | |||
|coexpression_cluster_id=C50 | |coexpression_cluster_id=C50 | ||
|description=CAGE_peak_3_at_CSF1R_5end | |description=CAGE_peak_3_at_CSF1R_5end | ||
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|ontology_enrichment_celltype=CL:0000066!1.22e-08!254;CL:0002541!3.51e-08!3;CL:0000039!5.47e-08!7;CL:0000586!5.47e-08!7;CL:0000349!6.72e-08!3;CL:0002577!6.72e-08!3;CL:0002621!5.14e-07!3 | |ontology_enrichment_celltype=CL:0000066!1.22e-08!254;CL:0002541!3.51e-08!3;CL:0000039!5.47e-08!7;CL:0000586!5.47e-08!7;CL:0000349!6.72e-08!3;CL:0002577!6.72e-08!3;CL:0002621!5.14e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000349;3.10e-33;19!CL:0002541;3.11e-21;3!CL:0002577;2.14e-20;3!CL:0002536;2.16e-14;2!CL:0001014;9.48e-14;2!CL:0001016;9.48e-14;2!CL:0002586;2.03e-09;3!CL:0000039;5.97e-09;7!CL:0000586;5.97e-09;7!CL:0000149;2.84e-07;4 | |ontology_enrichment_celltype_v019=CL:0000349;3.10e-33;19!CL:0002541;3.11e-21;3!CL:0002577;2.14e-20;3!CL:0002536;2.16e-14;2!CL:0001014;9.48e-14;2!CL:0001016;9.48e-14;2!CL:0002586;2.03e-09;3!CL:0000039;5.97e-09;7!CL:0000586;5.97e-09;7!CL:0000149;2.84e-07;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0000349,3.05e-33,19;CL:0002541,3.11e-21,3;CL:0002577,2.14e-20,3;CL:0002536,2.16e-14,2;CL:0001014,9.17e-14,2;CL:0001016,9.17e-14,2;CL:0002586,1.94e-09,3;CL:0000039,5.57e-09,7;CL:0000586,5.57e-09,7;CL:0000149,2.75e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0003124;3.10e-08;1 | |ontology_enrichment_development_v019=UBERON:0003124;3.10e-08;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1799;6.10e-08;1!DOID:10165;6.10e-08;1!DOID:1798;6.10e-08;1 | |ontology_enrichment_disease_v019=DOID:1799;6.10e-08;1!DOID:10165;6.10e-08;1!DOID:1798;6.10e-08;1 | ||
|ontology_enrichment_disease_v019_2=DOID:1799,6.10e-08,1;DOID:10165,6.10e-08,1;DOID:1798,6.10e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0005631!2.39e-22!14;UBERON:0000158!2.39e-22!14;UBERON:0003124!1.44e-16!7;UBERON:0000478!1.50e-15!24;UBERON:0004923!1.24e-11!57;UBERON:0001987!4.46e-10!4;UBERON:0004340!4.46e-10!4;UBERON:0000305!3.03e-08!7;UBERON:0000476!3.51e-08!3;UBERON:0000920!3.51e-08!3;UBERON:0004871!3.85e-07!8;UBERON:0001949!5.14e-07!3 | |ontology_enrichment_uberon=UBERON:0005631!2.39e-22!14;UBERON:0000158!2.39e-22!14;UBERON:0003124!1.44e-16!7;UBERON:0000478!1.50e-15!24;UBERON:0004923!1.24e-11!57;UBERON:0001987!4.46e-10!4;UBERON:0004340!4.46e-10!4;UBERON:0000305!3.03e-08!7;UBERON:0000476!3.51e-08!3;UBERON:0000920!3.51e-08!3;UBERON:0004871!3.85e-07!8;UBERON:0001949!5.14e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0005631;6.04e-32;10!UBERON:0000158;6.04e-32;10!UBERON:0000478;1.45e-31;24!UBERON:0001987;7.07e-27;4!UBERON:0003124;3.11e-21;3!UBERON:0000920;3.11e-21;3!UBERON:0000305;2.98e-15;7!UBERON:0000966;4.55e-12;5!UBERON:0005388;4.55e-12;5!UBERON:0001802;4.55e-12;5!UBERON:0001781;2.03e-09;3!UBERON:0001782;2.03e-09;3!UBERON:0004923;1.49e-08;55 | |ontology_enrichment_uberon_v019=UBERON:0005631;6.04e-32;10!UBERON:0000158;6.04e-32;10!UBERON:0000478;1.45e-31;24!UBERON:0001987;7.07e-27;4!UBERON:0003124;3.11e-21;3!UBERON:0000920;3.11e-21;3!UBERON:0000305;2.98e-15;7!UBERON:0000966;4.55e-12;5!UBERON:0005388;4.55e-12;5!UBERON:0001802;4.55e-12;5!UBERON:0001781;2.03e-09;3!UBERON:0001782;2.03e-09;3!UBERON:0004923;1.49e-08;55 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.57e-55,14;UBERON:0000158,1.57e-55,14;UBERON:0003124,2.58e-46,7;UBERON:0000478,1.43e-31,24;UBERON:0001987,7.07e-27,4;UBERON:0004340,7.07e-27,4;UBERON:0004923,4.14e-22,66;UBERON:0000920,3.11e-21,3;UBERON:0000305,2.93e-15,7;UBERON:0004871,2.25e-13,8;UBERON:0000966,3.66e-10,6;UBERON:0005388,3.66e-10,6;UBERON:0001802,3.66e-10,6;UBERON:0001782,1.94e-09,3;UBERON:0005424,1.94e-09,3;UBERON:0001781,2.75e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,23.1547854457983,20.3100573235909,0,0,0,0,0,0,0.123121058076788,0,0,0,0.136874425072884,0,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795285947051099,0,0.189069634328136,0.443458794925128,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0.0974370051611986,0,0,0,0,0,0,0.57978255948989,1.09098448236334,0.286804595389004,0.121973706129595,0,0.116193942869518,1.0366105501537,0.252320850875628,0.36497735907583,0,0,0,0,0,0.354920400119532,0.168584690078102,0.241011029883482,0,0,0,0.269662616320329,0.196221465125346,0,0,0,0,0,0,0,0.590789906681404,0,10.4540172761647,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.04735661515894,0.425325291727159,0,0,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.18444442904901,11.6504807657348,24.7960040530338,0,0,0,0,0,0.160853921143607,0,0,0,0.164254312027618,0,0,4.10922128611516,0,0,0,0,0,0.451199612907412,0,0,0,0,0,0,0,0,0,0,0,0.831076008928724,0,0,0,0,1.64007322849853,10.4121086292577,47.6049473812477,0,0,0,0.650060246036521,0,0,0,0.15350367472613,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,51.9673780287821,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0.320472213382419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.1445808400644,0.593929361665277,2.15012491469462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0.945550727071745,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0,0,16.1394733071642,39.6728788291193,1.84700532267414,119.62543489947,33.1583288114742,219.610327719678,0,0,0,0,0,0,0,0,0,0.163232808159148,0.848118428603645,0,0,0,0,0,0.123563938946503,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0.300646838828985,0,0,0,0,0,0,0,0,0.293977192243133,0.522355239482415,0,0,0,0,0,0,0,0.677942222341597,0,0,0,0,0.0801588202515337,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.72445172258151,5.41661368190565,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,1.19730191562487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0.265841714557995,0,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0.219284049578707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17777262201231,0,0.183428598521679,0.346576998451015,0.381382095467167,0,0,0,2.0170506870352,0,13.8810548075154,0,0.591424344868181,0.0675375846183947,0,0,0,0,0,0.496211178389294,0,0,3.21421101526972,0,0,0.227662191351298,105.289713383052,0,0,0,0,0,0,0,0,0.280272163313789,0,0,0,6.07550625501579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0.169927114687817,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.305966489225945,0,0.918948995348449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,23.1547854457983,20.3100573235909,0,0,0,0,0,0,0.123121058076788,0,0,0,0.136874425072884,0,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795285947051099,0,0.189069634328136,0.443458794925128,0.175669571386252,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0.0974370051611986,0,0,0,0,0,0,0.57978255948989,1.09098448236334,0.286804595389004,0.121973706129595,0,0.116193942869518,1.0366105501537,0.252320850875628,0.36497735907583,0,0,0,0,0,0.354920400119532,0.168584690078102,0.241011029883482,0,0,0,0.269662616320329,0.196221465125346,0,0,0,0,0,0,0,0.590789906681404,0,10.4540172761647,0,0.109750285408626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.04735661515894,0.425325291727159,0,0,0.766765358330422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.18444442904901,11.6504807657348,24.7960040530338,0,0,0,0,0,0.160853921143607,0,0,0,0.164254312027618,0,0,4.10922128611516,0,0,0,0,0,0.451199612907412,0,0,0,0,0,0,0,0,0,0,0,0.831076008928724,0,0,0,0,1.64007322849853,10.4121086292577,47.6049473812477,0,0,0,0.650060246036521,0,0,0,0.15350367472613,0,0,0,0,0,0.165284915360978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,51.9673780287821,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0.320472213382419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,18.1445808400644,0.593929361665277,2.15012491469462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0.945550727071745,0,0,0,0,0,0,0,0,0,0.10893846351899,0,0,0,16.1394733071642,39.6728788291193,1.84700532267414,119.62543489947,33.1583288114742,219.610327719678,0,0,0,0,0,0,0,0,0,0.163232808159148,0.848118428603645,0,0,0,0,0,0.123563938946503,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0.300646838828985,0,0,0,0,0,0,0,0,0.293977192243133,0.522355239482415,0,0,0,0,0,0,0,0.677942222341597,0,0,0,0,0.0801588202515337,0,0,0,0,0,0,0,0.235694034616795,0,0,0,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.72445172258151,5.41661368190565,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,1.19730191562487,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0.265841714557995,0,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0.219284049578707,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17777262201231,0,0.183428598521679,0.346576998451015,0.381382095467167,0,0,0,2.0170506870352,0,13.8810548075154,0,0.591424344868181,0.0675375846183947,0,0,0,0,0,0.496211178389294,0,0,3.21421101526972,0,0,0.227662191351298,105.289713383052,0,0,0,0,0,0,0,0,0.280272163313789,0,0,0,6.07550625501579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0.169927114687817,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.305966489225945,0,0.918948995348449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | ||
|short_description=p3@CSF1R | |short_description=p3@CSF1R | ||
}} | }} |
Latest revision as of 02:52, 16 September 2015
Short description: | p3@CSF1R |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_CSF1R_5end |
Coexpression cluster: | C50_chorionic_placenta_amniotic_migratory_smallcell_chronic_choriocarcinoma |
Association with transcript: | 0bp_to_ENST00000286301, ENST00000511344, NM_005211, uc003lrm.2_5end |
EntrezGene: | CSF1R |
HGNC: | 2433 |
UniProt: | P07333D6RGW1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 3.05e-33 | 19 |
chorionic membrane mesenchymal stem cell | 3.11e-21 | 3 |
placental epithelial cell | 2.14e-20 | 3 |
amniotic epithelial cell | 2.16e-14 | 2 |
CD1a-positive Langerhans cell | 9.17e-14 | 2 |
immature CD1a-positive Langerhans cell | 9.17e-14 | 2 |
retinal pigment epithelial cell | 1.94e-09 | 3 |
germ line cell | 5.57e-09 | 7 |
germ cell | 5.57e-09 | 7 |
visual pigment cell | 2.75e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.57e-55 | 14 |
membranous layer | 1.57e-55 | 14 |
chorion | 2.58e-46 | 7 |
extraembryonic structure | 1.43e-31 | 24 |
placenta | 7.07e-27 | 4 |
allantois | 7.07e-27 | 4 |
organ component layer | 4.14e-22 | 66 |
egg chorion | 3.11e-21 | 3 |
amnion | 2.93e-15 | 7 |
somatic layer of lateral plate mesoderm | 2.25e-13 | 8 |
retina | 3.66e-10 | 6 |
photoreceptor array | 3.66e-10 | 6 |
posterior segment of eyeball | 3.66e-10 | 6 |
pigmented layer of retina | 1.94e-09 | 3 |
presumptive retinal pigmented epithelium | 1.94e-09 | 3 |
layer of retina | 2.75e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 6.10e-08 | 1 |
endocrine pancreas cancer | 6.10e-08 | 1 |
pancreatic endocrine carcinoma | 6.10e-08 | 1 |