FFCP PHASE1:Hg19::chrX:52386980..52387013,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=728242,9502 | |EntrezGene=728242,9502 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30680,4112 | |HGNC=30680,4112 | ||
|TSSclassifier=strong | |||
|UniProt=Q96GT9 | |UniProt=Q96GT9 | ||
|association_with_transcript=0bp_to_ENST00000330906_5end | |association_with_transcript=0bp_to_ENST00000330906_5end | ||
|cluster_id=chrX:52386980..52387013,- | |||
|coexpression_cluster_id=C1004 | |||
|description=CAGE_peak_2_at_XAGE2B_5end,CAGE_peak_2_at_XAGE2_5end | |description=CAGE_peak_2_at_XAGE2B_5end,CAGE_peak_2_at_XAGE2_5end | ||
|id=chrX:52386980..52387013,- | |id=chrX:52386980..52387013,- | ||
|ontology_enrichment_celltype=CL:0002541!6.46e-17!3;CL:0000349!3.59e-16!3;CL:0002577!3.59e-16!3;CL:0000039!4.43e-12!7;CL:0000586!4.43e-12!7;CL:0002536!3.16e-11!2;CL:0002537!3.05e-10!5;CL:0000197!6.82e-08!6;CL:0000098!6.82e-08!6;CL:0002167!6.82e-08!6 | |ontology_enrichment_celltype=CL:0002541!6.46e-17!3;CL:0000349!3.59e-16!3;CL:0002577!3.59e-16!3;CL:0000039!4.43e-12!7;CL:0000586!4.43e-12!7;CL:0002536!3.16e-11!2;CL:0002537!3.05e-10!5;CL:0000197!6.82e-08!6;CL:0000098!6.82e-08!6;CL:0002167!6.82e-08!6 | ||
|ontology_enrichment_celltype_v019=CL:0000349;1.19e-48;19!CL:0002541;6.47e-30;3!CL:0002536;2.05e-19;2!CL:0002537;4.97e-18;5!CL:0002577;1.36e-13;3!CL:0000039;6.21e-13;7!CL:0000586;6.21e-13;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.31e-48,19;CL:0002541,6.80e-30,3;CL:0002536,2.26e-19,2;CL:0002537,4.98e-18,5;CL:0002577,1.41e-13,3;CL:0000039,6.34e-13,7;CL:0000586,6.34e-13,7 | |||
|ontology_enrichment_development_v019=UBERON:0003124;4.58e-11;1 | |||
|ontology_enrichment_disease=DOID:1799!8.34e-07!1;DOID:10165!8.34e-07!1;DOID:1798!8.34e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:1799;2.94e-11;1!DOID:10165;2.94e-11;1!DOID:1798;2.94e-11;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,3.08e-11,1;DOID:10165,3.08e-11,1;DOID:1798,3.08e-11,1 | |||
|ontology_enrichment_uberon=UBERON:0005631!8.08e-52!14;UBERON:0000158!8.08e-52!14;UBERON:0003124!2.67e-36!7;UBERON:0000478!3.56e-29!24;UBERON:0001987!3.61e-21!4;UBERON:0004340!3.61e-21!4;UBERON:0000305!1.15e-18!7;UBERON:0000476!6.46e-17!3;UBERON:0000920!6.46e-17!3;UBERON:0004871!2.65e-16!8;UBERON:0004923!8.02e-15!57;UBERON:0000995!5.87e-11!21;UBERON:0005795!2.04e-10!22;UBERON:0003975!2.04e-10!22;UBERON:0004175!4.67e-09!25;UBERON:0003134!1.64e-07!37;UBERON:0000474!1.64e-07!37;UBERON:0003133!6.01e-07!48 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;3.98e-60;10!UBERON:0000158;3.98e-60;10!UBERON:0000478;2.20e-46;24!UBERON:0000305;1.01e-33;7!UBERON:0003124;6.47e-30;3!UBERON:0000920;6.47e-30;3!UBERON:0001987;4.80e-22;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.72e-80,14;UBERON:0000158,1.72e-80,14;UBERON:0003124,5.22e-49,7;UBERON:0000478,2.40e-46,24;UBERON:0000305,1.08e-33,7;UBERON:0000920,6.80e-30,3;UBERON:0004871,1.73e-29,8;UBERON:0001987,4.97e-22,4;UBERON:0004340,4.97e-22,4;UBERON:0004923,7.85e-16,66 | |||
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|short_description=p2@XAGE2B,p2@XAGE2 | |short_description=p2@XAGE2B,p2@XAGE2 | ||
}} | }} |
Latest revision as of 23:20, 15 September 2015
Short description: | p2@XAGE2B, p2@XAGE2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_XAGE2B_5end, CAGE_peak_2_at_XAGE2_5end |
Coexpression cluster: | C1004_chorionic_pancreatic_choriocarcinoma_amniotic_placenta_colon_Placental |
Association with transcript: | 0bp_to_ENST00000330906_5end |
EntrezGene: | 728242,9502 |
HGNC: | 4112&submit=Submit 30680, 4112 |
UniProt: | Q96GT9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.31e-48 | 19 |
chorionic membrane mesenchymal stem cell | 6.80e-30 | 3 |
amniotic epithelial cell | 2.26e-19 | 2 |
amnion mesenchymal stem cell | 4.98e-18 | 5 |
placental epithelial cell | 1.41e-13 | 3 |
germ line cell | 6.34e-13 | 7 |
germ cell | 6.34e-13 | 7 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.72e-80 | 14 |
membranous layer | 1.72e-80 | 14 |
chorion | 5.22e-49 | 7 |
extraembryonic structure | 2.40e-46 | 24 |
amnion | 1.08e-33 | 7 |
egg chorion | 6.80e-30 | 3 |
somatic layer of lateral plate mesoderm | 1.73e-29 | 8 |
placenta | 4.97e-22 | 4 |
allantois | 4.97e-22 | 4 |
organ component layer | 7.85e-16 | 66 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 3.08e-11 | 1 |
endocrine pancreas cancer | 3.08e-11 | 1 |
pancreatic endocrine carcinoma | 3.08e-11 | 1 |