FFCP PHASE1:Hg19::chrX:52112136..52112150,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=728242,9502 | |EntrezGene=728242,9502 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30680,4112 | |HGNC=30680,4112 | ||
|TSSclassifier=strong | |||
|UniProt=Q96GT9 | |UniProt=Q96GT9 | ||
|association_with_transcript=-22bp_to_ENST00000286049_5end | |association_with_transcript=-22bp_to_ENST00000286049_5end | ||
|cluster_id=chrX:52112136..52112150,+ | |||
|coexpression_cluster_id=C1004 | |||
|description=CAGE_peak_3_at_XAGE2B_5end,CAGE_peak_3_at_XAGE2_5end | |description=CAGE_peak_3_at_XAGE2B_5end,CAGE_peak_3_at_XAGE2_5end | ||
|id=chrX:52112136..52112150,+ | |id=chrX:52112136..52112150,+ | ||
|ontology_enrichment_celltype=CL:0002541!5.85e-18!3;CL:0000349!3.29e-17!3;CL:0002577!3.29e-17!3;CL:0002536!6.89e-12!2;CL:0002537!6.47e-11!5;CL:0000039!7.75e-08!7;CL:0000586!7.75e-08!7 | |ontology_enrichment_celltype=CL:0002541!5.85e-18!3;CL:0000349!3.29e-17!3;CL:0002577!3.29e-17!3;CL:0002536!6.89e-12!2;CL:0002537!6.47e-11!5;CL:0000039!7.75e-08!7;CL:0000586!7.75e-08!7 | ||
|ontology_enrichment_celltype_v019=CL:0000349;1.53e-48;19!CL:0002541;1.16e-29;3!CL:0002536;1.40e-19;2!CL:0002537;5.91e-18;5!CL:0002577;1.36e-13;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.87e-48,19;CL:0002541,1.11e-29,3;CL:0002536,3.00e-19,2;CL:0002537,5.58e-18,5;CL:0002577,1.16e-13,3 | |||
|ontology_enrichment_development_v019=UBERON:0003124;3.95e-11;1 | |||
|ontology_enrichment_disease=DOID:299!3.04e-07!25;DOID:1799!3.13e-07!1;DOID:10165!3.13e-07!1;DOID:1798!3.13e-07!1;DOID:3112!7.82e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:1799;2.79e-11;1!DOID:10165;2.79e-11;1!DOID:1798;2.79e-11;1!DOID:3112;1.15e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,2.79e-11,1;DOID:10165,2.79e-11,1;DOID:1798,2.79e-11,1;DOID:3112,1.33e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0005631!1.76e-55!14;UBERON:0000158!1.76e-55!14;UBERON:0003124!8.78e-39!7;UBERON:0000478!2.37e-31!24;UBERON:0001987!1.30e-22!4;UBERON:0004340!1.30e-22!4;UBERON:0000305!6.25e-20!7;UBERON:0000476!5.85e-18!3;UBERON:0000920!5.85e-18!3;UBERON:0004871!2.05e-17!8;UBERON:0004923!3.65e-16!57;UBERON:0000995!5.93e-09!21;UBERON:0005795!1.61e-08!22;UBERON:0003975!1.61e-08!22;UBERON:0004175!2.00e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;5.84e-60;10!UBERON:0000158;5.84e-60;10!UBERON:0000478;2.56e-46;24!UBERON:0000305;9.41e-34;7!UBERON:0003124;1.16e-29;3!UBERON:0000920;1.16e-29;3!UBERON:0001987;4.30e-22;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.71e-80,14;UBERON:0000158,2.71e-80,14;UBERON:0003124,5.67e-49,7;UBERON:0000478,3.13e-46,24;UBERON:0000305,1.52e-33,7;UBERON:0000920,1.11e-29,3;UBERON:0004871,2.33e-29,8;UBERON:0001987,3.73e-22,4;UBERON:0004340,3.73e-22,4;UBERON:0004923,8.60e-16,66;UBERON:0000995,1.85e-07,21;UBERON:0005795,3.98e-07,22;UBERON:0003975,3.98e-07,22 | |||
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|short_description=p3@XAGE2B,p3@XAGE2 | |short_description=p3@XAGE2B,p3@XAGE2 | ||
}} | }} |
Latest revision as of 23:17, 15 September 2015
Short description: | p3@XAGE2B, p3@XAGE2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_XAGE2B_5end, CAGE_peak_3_at_XAGE2_5end |
Coexpression cluster: | C1004_chorionic_pancreatic_choriocarcinoma_amniotic_placenta_colon_Placental |
Association with transcript: | -22bp_to_ENST00000286049_5end |
EntrezGene: | 728242,9502 |
HGNC: | 4112&submit=Submit 30680, 4112 |
UniProt: | Q96GT9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.87e-48 | 19 |
chorionic membrane mesenchymal stem cell | 1.11e-29 | 3 |
amniotic epithelial cell | 3.00e-19 | 2 |
amnion mesenchymal stem cell | 5.58e-18 | 5 |
placental epithelial cell | 1.16e-13 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.71e-80 | 14 |
membranous layer | 2.71e-80 | 14 |
chorion | 5.67e-49 | 7 |
extraembryonic structure | 3.13e-46 | 24 |
amnion | 1.52e-33 | 7 |
egg chorion | 1.11e-29 | 3 |
somatic layer of lateral plate mesoderm | 2.33e-29 | 8 |
placenta | 3.73e-22 | 4 |
allantois | 3.73e-22 | 4 |
organ component layer | 8.60e-16 | 66 |
uterus | 1.85e-07 | 21 |
embryonic uterus | 3.98e-07 | 22 |
internal female genitalia | 3.98e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 2.79e-11 | 1 |
endocrine pancreas cancer | 2.79e-11 | 1 |
pancreatic endocrine carcinoma | 2.79e-11 | 1 |
papillary adenocarcinoma | 1.33e-10 | 1 |