FFCP PHASE1:Hg19::chr7:116312521..116312532,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:116312521..116312532,+
|short_description=p4@MET
|description=CAGE_peak_4_at_MET_5end
|association_with_transcript=62bp_to_ENST00000318493,NM_000245,NM_001...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4233 | |EntrezGene=4233 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7029 | |HGNC=7029 | ||
|TSSclassifier=strong | |||
|UniProt=A1L467,P08581 | |UniProt=A1L467,P08581 | ||
|association_with_transcript=62bp_to_ENST00000318493,NM_000245,NM_001127500,uc003vii.1,uc003vij.2,uc010lkg.2,uc010lkh.2_5end | |||
|cluster_id=chr7:116312521..116312532,+ | |||
|coexpression_cluster_id=C2876 | |||
|description=CAGE_peak_4_at_MET_5end | |||
|id=chr7:116312521..116312532,+ | |||
|ontology_enrichment_celltype=CL:0000066!5.33e-44!254;CL:0002076!9.07e-14!43;CL:0000223!5.37e-13!59;CL:0000220!3.83e-12!246;CL:0002321!7.06e-12!248;CL:0000076!7.08e-09!62;CL:0000075!4.87e-07!27;CL:0002077!9.46e-07!33 | |||
|ontology_enrichment_celltype_v019=CL:0002076;5.54e-13;42!CL:0000075;5.29e-09;27!CL:0002368;2.54e-08;13!CL:0002251;7.21e-08;20!CL:0002077;7.93e-07;34 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.05e-45,253;CL:0002076,1.38e-17,42;CL:0000223,6.23e-16,58;CL:0000075,8.86e-09,27;CL:0002321,1.44e-08,250;CL:0002368,2.22e-08,13;CL:0002251,4.23e-08,20;CL:0000076,1.07e-07,63;CL:0002077,2.30e-07,34 | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.63e-11;29!CL:0000223;2.01e-08;58 | |||
|ontology_enrichment_disease=DOID:305!1.47e-18!106;DOID:0050687!3.98e-17!143;DOID:14566!4.85e-08!239;DOID:162!5.63e-07!235 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.21e-09;14!DOID:299;1.57e-07;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.18e-20,106;DOID:0050687,6.43e-20,143;DOID:14566,2.18e-11,239;DOID:162,4.11e-10,235;DOID:1749,1.03e-09,14;DOID:299,1.46e-07,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.67e-12!169;UBERON:0000925!4.67e-12!169;UBERON:0006595!4.67e-12!169;UBERON:0008947!9.05e-10!38;UBERON:0003258!9.05e-10!38;UBERON:0000077!4.18e-09!130;UBERON:0000065!5.33e-09!53;UBERON:0000467!8.59e-09!625;UBERON:0001007!9.90e-09!155;UBERON:0001555!9.90e-09!155;UBERON:0007026!9.90e-09!155;UBERON:0000480!1.25e-08!626;UBERON:0001004!1.37e-08!72;UBERON:0005911!1.49e-08!82;UBERON:0000062!1.56e-07!511;UBERON:0000475!1.86e-07!365;UBERON:0000064!3.90e-07!219;UBERON:0005153!4.86e-07!37;UBERON:0004921!5.68e-07!129;UBERON:0004185!5.68e-07!129;UBERON:0005631!7.63e-07!14;UBERON:0000158!7.63e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0000065;1.29e-10;44!UBERON:0000072;1.35e-08;37!UBERON:0001737;5.98e-08;9!UBERON:0001557;5.98e-08;9!UBERON:0004807;9.20e-08;22!UBERON:0005631;9.26e-08;10!UBERON:0000158;9.26e-08;10!UBERON:0001004;1.17e-07;65!UBERON:0005911;2.16e-07;36!UBERON:0002048;5.25e-07;22!UBERON:0000117;5.25e-07;22!UBERON:0000171;5.25e-07;22!UBERON:0000170;5.25e-07;22!UBERON:0006554;8.81e-07;30!UBERON:0001008;8.81e-07;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0008947,7.66e-13,38;UBERON:0003258,7.66e-13,38;UBERON:0004119,5.87e-11,160;UBERON:0000925,5.87e-11,160;UBERON:0006595,5.87e-11,160;UBERON:0001004,6.00e-11,74;UBERON:0000065,7.53e-11,54;UBERON:0005631,8.38e-09,14;UBERON:0000158,8.38e-09,14;UBERON:0005911,1.48e-08,82;UBERON:0001737,5.36e-08,9;UBERON:0005153,6.06e-08,37;UBERON:0000072,1.52e-07,47;UBERON:0001007,2.45e-07,145;UBERON:0001555,2.45e-07,145;UBERON:0007026,2.45e-07,145;UBERON:0006554,3.94e-07,47;UBERON:0002048,4.24e-07,22;UBERON:0000117,4.24e-07,22;UBERON:0000171,4.24e-07,22;UBERON:0000170,4.24e-07,22;UBERON:0005597,4.24e-07,22;UBERON:0000118,4.24e-07,22;UBERON:0001041,4.89e-07,87;UBERON:0005177,5.18e-07,101;UBERON:0001008,7.80e-07,48 | |||
|phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0.245733936501509,0,3.9319446983431,1.05506791291381,0.123766352960047,0,0,0,0,0,0.246242116153576,1.02000345622126,0,0.286235987131057,1.64249310087461,0.87879847716362,0,0,0,0.786728553697808,0,0.77408061658038,1.83884244895785,2.10844143144775,2.9580320813343,0,0,0,0,0.401088894940283,0,0,0,0,0.145398238779565,0,0.242584061187816,0,0.822335776043652,0.309706370895104,0.28769239232215,0,0,0.689491361473237,0.645484683583826,1.35426486594342,0.188242339542605,0,0.224723484445085,0,1.28371610830437,0,0.659702600373432,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.361439152384566,0,0.289693037921647,0,0,0.850813354476611,0.443458794925128,1.31752178539689,0.196468613246569,0,1.48313777113772,0,0,0,0,0,0,0.79504962946682,0,0,2.82653970962005,0.419499436209906,0,0.208994966536811,0.775250277507987,0.71153252537342,0.33472061276467,0.805658634218294,0.760272105718513,0,0.735326160691737,0,1.07159673940896,0.898117490504679,0.450445921933289,1.53316637465883,0.949265659568129,0.366403487860815,0,0,0.436094052142534,0,0.379891534993739,0.397227542439656,2.0078563452417,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368502951935304,0.103325781175765,0,0,0,0,0.168336113954066,0.250237039743928,0.554128230968366,0,0.30648779579902,0,0,3.22901344239952,0.427114777637135,0,10.5031883629541,1.8549455262919,0.772921620136887,0.18611685633159,6.58227695740938,0.68205903612839,1.26216887122057,0.184099797284599,0.323292113637624,4.61512470271599,1.61203357164224,1.18692414617341,4.25173876959253,3.00020732649918,8.03052867089211,0,0.132529768321485,0,0.10366105501537,0,0,0,1.92972281457866,2.76269842704961,0,0,2.48444280083672,4.21461725195254,4.09718750801919,2.97793726377464,2.39667388501647,5.21995362044413,2.83145747136345,3.92442930250692,2.30848294167834,0,0,0,0,1.26755034821831,0,1.18157981336281,0,1.8448265781467,1.71567810298526,1.75600456653801,4.49607013030478,1.20634766893957,1.66659201285353,0.325808305310325,0,0,1.39116485970092,3.17003474436719,0.288732895522148,0,0.190254152234598,0,0,0,0,0,0.93733833986777,4.19955320497149,3.82792762554443,5.82130397568514,3.48760726216754,3.83382679165211,0,0,0,0,0,19.5573514419881,6.11181480893244,25.7878383862103,0,1.43958489784653,11.1126931402249,8.86061941154792,0,0,0,0.129271715757778,0,0,2.12750493267896,0,0.514414748524284,0,0,0,0,0,0,0,0,0.301439377059586,0.871533458600294,0.199945982364114,0,0,0,0,0,4.27910715122155,1.44781306667579,1.43833425785268,1.96967059563885,0,0,0,0,0.254094624222463,0,0.773288812777695,0.502548796003046,0,0,0,0,0,0,0.271265023699736,0.415941723061614,1.07057393278297,2.05013139544115,2.34282829985426,0.601892199455438,0,1.03473071292505,1.99267679560631,1.47495334833363,0.60818530127658,0,0,0,0,0.106727557803444,3.63753085735511,1.66435439510497,0.907170879989041,0,1.07423381301644,0.280660094433074,0,0,0,0,0.154209693802656,0,0.246381468041427,0,0.116210378459959,2.65890789101569,5.81468763879526,4.51196845785892,0.114814448164607,0.364182336013434,0.131124414959424,1.80479845162965,5.31405826020462,3.13739907670742,1.46139224653261,5.59423633132241,0,0,1.72732732881711,0,1.08378575017541,0.501689773854853,3.05851527654046,2.49322802678617,1.34324852833307,0,0,3.59030175162945,0.656029291399411,2.60302715731442,4.22468147755661,0,0,1.72279661398852,2.60024098414608,0,0.96670718292122,0,0.307007349452259,0.275673144969061,0.537101224341368,0.145016693914229,0.255679882248303,0.534192213880424,5.12383237619032,3.0750410778417,4.8492830747942,1.6185244936888,0,1.5740617341532,0,0,0,0.869932992075073,0.18532421910392,0.429374660225974,0,0.316379424718726,0.38126038784765,0,0.42793898803392,0,0,0.359744915166629,0,0,0,0,0.421258456238981,0,0,1.05650146756755,0.136499911407986,0,0,1.10273068709225,0.66343897524122,0.438450885253763,0,0.655894752046633,0,0,0.281695602532241,1.00387946542836,0.294747123039363,0,3.90237170477658,0.211107635297664,0,0,0,1.34710957815717,1.34060455107157,3.26672954583968,4.0481834334015,1.29151611801369,1.68471475667626,1.33029046061003,2.98640420269047,0,0,0,0,0,0,0,0,0,0,5.63592496756373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,3.12549761487054,4.7748896947538,7.7210817016486,6.14321404198464,0,0,2.22617410045812,0,0,0.597743964753209,0.552567831062295,1.0077309914171,0.511343412510774,0,0.933118762985422,4.673154259661,0.537063524026827,0,0.295930216910801,0,0,0.969332746095218,0.185536196323703,0,0.520855522170466,0,0.724999575434793,1.593108275997,15.255219017566,10.8738333613251,0,0,0,0.885741385813839,0,0,0,0,0.219385397153973,0.32681539055697,0.83654246567162,0.384751292518985,0.683652335082007,2.3056390438806,0,1.84700532267414,4.14701507651495,6.13703875792477,10.6606955203727,0,0,0,0,0,0,0,0,1.89898258075224,7.5087091753208,0.565412285735763,1.51472047819464,0,0.26537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| ||
|short_description=p4@MET | |||
}} | }} |
Latest revision as of 18:10, 15 September 2015
Short description: | p4@MET |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_MET_5end |
Coexpression cluster: | C2876_squamous_gastric_pharyngeal_renal_signet_papillotubular_gall |
Association with transcript: | 62bp_to_ENST00000318493, NM_000245, NM_001127500, uc003vii.1, uc003vij.2, uc010lkg.2, uc010lkh.2_5end |
EntrezGene: | MET |
HGNC: | 7029 |
UniProt: | A1L467P08581 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.05e-45 | 253 |
endo-epithelial cell | 1.38e-17 | 42 |
endodermal cell | 6.23e-16 | 58 |
columnar/cuboidal epithelial cell | 8.86e-09 | 27 |
embryonic cell | 1.44e-08 | 250 |
respiratory epithelial cell | 2.22e-08 | 13 |
epithelial cell of alimentary canal | 4.23e-08 | 20 |
squamous epithelial cell | 1.07e-07 | 63 |
ecto-epithelial cell | 2.30e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
respiratory primordium | 7.66e-13 | 38 |
endoderm of foregut | 7.66e-13 | 38 |
endoderm-derived structure | 5.87e-11 | 160 |
endoderm | 5.87e-11 | 160 |
presumptive endoderm | 5.87e-11 | 160 |
respiratory system | 6.00e-11 | 74 |
respiratory tract | 7.53e-11 | 54 |
extraembryonic membrane | 8.38e-09 | 14 |
membranous layer | 8.38e-09 | 14 |
endo-epithelium | 1.48e-08 | 82 |
larynx | 5.36e-08 | 9 |
epithelial bud | 6.06e-08 | 37 |
segment of respiratory tract | 1.52e-07 | 47 |
digestive system | 2.45e-07 | 145 |
digestive tract | 2.45e-07 | 145 |
primitive gut | 2.45e-07 | 145 |
urinary system structure | 3.94e-07 | 47 |
lung | 4.24e-07 | 22 |
respiratory tube | 4.24e-07 | 22 |
respiration organ | 4.24e-07 | 22 |
pair of lungs | 4.24e-07 | 22 |
lung primordium | 4.24e-07 | 22 |
lung bud | 4.24e-07 | 22 |
foregut | 4.89e-07 | 87 |
trunk region element | 5.18e-07 | 101 |
renal system | 7.80e-07 | 48 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.18e-20 | 106 |
cell type cancer | 6.43e-20 | 143 |
disease of cellular proliferation | 2.18e-11 | 239 |
cancer | 4.11e-10 | 235 |
squamous cell carcinoma | 1.03e-09 | 14 |
adenocarcinoma | 1.46e-07 | 25 |