FFCP PHASE1:Mm9::chr3:155177407..155177427,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr3:155177407..155177427,+ to FFCP PHASE1:Mm9::chr3:155177407..155177427,+: NSchange) |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=415 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr3:155177407..155177427,+ | |||
|description=CAGE_peak_at_chr3:155177407..155177427,+ | |||
|id=chr3:155177407..155177427,+ | |||
|ontology_enrichment_celltype=CL:0000063!1.79e-28!66;CL:0000144!1.01e-18!121;CL:0000012!1.01e-18!121;CL:0000066!9.90e-18!25;CL:0002371!5.35e-17!118;CL:0000548!8.59e-15!115;CL:0000004!8.59e-15!115;CL:0000255!8.59e-15!115;CL:0000223!1.79e-13!20;CL:0002076!4.89e-13!15;CL:0002320!8.36e-13!46;CL:0000134!8.36e-13!46;CL:0000988!2.11e-12!32;CL:0002032!2.11e-12!32;CL:0000037!2.11e-12!32;CL:0000566!2.11e-12!32;CL:0000837!2.11e-12!32;CL:0002031!9.71e-12!25;CL:0000219!1.33e-11!54;CL:0000838!3.80e-10!12;CL:0002563!8.91e-10!9;CL:0002251!8.91e-10!9;CL:0000738!1.99e-09!17;CL:0002087!1.99e-09!17;CL:0000034!2.90e-09!97;CL:0000791!3.49e-09!9;CL:0000789!3.49e-09!9;CL:0002420!3.49e-09!9;CL:0002419!3.49e-09!9;CL:0000790!3.49e-09!9;CL:0000084!3.75e-09!11;CL:0000827!3.75e-09!11;CL:0000542!3.99e-09!13;CL:0000051!3.99e-09!13;CL:0000075!1.29e-08!7;CL:0000624!4.74e-08!8;CL:0000239!7.94e-08!6;CL:0000677!7.94e-08!6;CL:0000212!7.94e-08!6;CL:0000584!7.94e-08!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.63e-16,25;CL:0002076,6.08e-14,15;CL:0000075,1.74e-13,7;CL:0002031,2.56e-13,25;CL:0000239,3.74e-12,6;CL:0000677,3.74e-12,6;CL:0000584,3.74e-12,6;CL:0000223,4.73e-12,20;CL:0000988,4.13e-11,32;CL:0002032,4.13e-11,32;CL:0000037,4.13e-11,32;CL:0000837,4.13e-11,32;CL:0002320,1.96e-10,46;CL:0000134,1.96e-10,46;CL:0002563,3.53e-10,9;CL:0002251,3.53e-10,9;CL:0000219,2.74e-09,54;CL:0000738,1.15e-08,17;CL:0002087,1.15e-08,17;CL:0000553,3.34e-08,6;CL:0000556,3.34e-08,6;CL:0000838,7.12e-08,12;CL:0000542,3.53e-07,13;CL:0000051,3.53e-07,13;CL:0000473,6.61e-07,7;CL:0000839,8.36e-07,13;CL:0000763,8.94e-07,16 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!1.16e-15!15;UBERON:0001242!3.32e-13!13;UBERON:0000060!3.32e-13!13;UBERON:0001262!3.32e-13!13;UBERON:0004786!3.32e-13!13;UBERON:0002384!8.36e-13!46;UBERON:0000485!3.38e-11!11;UBERON:0003350!8.91e-10!9;UBERON:0004808!8.91e-10!9;UBERON:0001277!8.91e-10!9;UBERON:0004923!4.41e-09!24;UBERON:0000490!3.27e-07!66 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,2.38e-17,15;UBERON:0001242,1.54e-13,13;UBERON:0001262,1.54e-13,13;UBERON:0004786,1.54e-13,13;UBERON:0002384,1.96e-10,46;UBERON:0000485,2.46e-10,11;UBERON:0003350,3.53e-10,9;UBERON:0004808,3.53e-10,9;UBERON:0001277,3.53e-10,9;UBERON:0004923,8.50e-10,24;UBERON:0002371,8.94e-07,16 | |||
|phase1_expression=0.480446541314382,1.04692622291808,1.81999695755814,15.7281389879552,13.023288978605,2.01455126294268,4.67225281191051,2.06597317506522,0.563154888606667,0.468129052643987,0.68487187290202,0.0797721589953364,3.0816131387617,2.53519167015092,0,2.02475267389826,1.39912375625629,2.68142840554502,3.29074640653773,2.12194825899015,0,0,5.48519557191764,9.11956809922418,11.0116454912242,1.14846392823004,3.4460959692726,1.29282739611533,9.5011709728187,1.26015064879965,1.33038306393183,0,0,0,0.577703239502549,0.332469290716985,1.02084678131185,1.67412652294763,1.5626706890476,5.75876118371178,1.76469446409304,2.04913645487534,3.39857247121808,0,0,0,0,0,0,0,0,0,2.51673909086605,5.07753499407941,4.7053131879945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285650984403804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28734528666413,0.982430281388212,5.79728977403356,24.9522924324602,0.679971333707751,0,0,0.448026887097336,0,0,0.519572009205738,1.7666978725517,1.26759077799012,1.28326477414318,2.54805239706646,0,3.68034769719064,1.52015919285059,0.505524445014783,0,0,0.148442139064825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.359445373517761,0.599902730993408,0.254140454146129,0,0,0,0,0,0,0,0,0,0,0,0.130120442962704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28673953557358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134206418760372,0,0,0.330418782983798,0,0,0,0,0,0,0,0,0.164698954724011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0.482443521363367,0,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0.172684981865896,0,3.01582567878545,3.80733978673097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162886959353576,0,0,0.242780636154981,0,0,0,0,0,0.363533729477506,0,0,0,0,0,0,0,0.214337035031592,0,0,0,0,0.23467170806371,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.509935289981566,0.279902904647316,0.276399947608848,0,0,0,0,0,0.218362563746178,0.134864346384821,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0,0,0,0,0,0,0.100966449948148,0,0,0,0,0,0,0.887943813496259,0.62799699626633,0.839423081820392,0,0,0,0,0,0,0,0,1.89038500578056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145346416632329,0,0,0,0,0,0,0.118635018124174,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0.480446541314382,1.04692622291808,1.81999695755814,15.7281389879552,13.023288978605,2.01455126294268,4.67225281191051,2.06597317506522,0.563154888606667,0.468129052643987,0.68487187290202,0.0797721589953364,3.0816131387617,2.53519167015092,0,2.02475267389826,1.39912375625629,2.68142840554502,3.29074640653773,2.12194825899015,0,0,5.48519557191764,9.11956809922418,11.0116454912242,1.14846392823004,3.4460959692726,1.29282739611533,9.5011709728187,1.26015064879965,1.33038306393183,0,0,0,0.577703239502549,0.332469290716985,1.02084678131185,1.67412652294763,1.5626706890476,5.75876118371178,1.76469446409304,2.04913645487534,3.39857247121808,0,0,0,0,0,0,0,0,0,2.51673909086605,5.07753499407941,4.7053131879945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285650984403804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28734528666413,0.982430281388212,5.79728977403356,24.9522924324602,0.679971333707751,0,0,0.448026887097336,0,0,0.519572009205738,1.7666978725517,1.26759077799012,1.28326477414318,2.54805239706646,0,3.68034769719064,1.52015919285059,0.505524445014783,0,0,0.148442139064825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.359445373517761,0.599902730993408,0.254140454146129,0,0,0,0,0,0,0,0,0,0,0,0.130120442962704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28673953557358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134206418760372,0,0,0.330418782983798,0,0,0,0,0,0,0,0,0.164698954724011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0.482443521363367,0,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0.172684981865896,0,3.01582567878545,3.80733978673097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162886959353576,0,0,0.242780636154981,0,0,0,0,0,0.363533729477506,0,0,0,0,0,0,0,0.214337035031592,0,0,0,0,0.23467170806371,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.509935289981566,0.279902904647316,0.276399947608848,0,0,0,0,0,0.218362563746178,0.134864346384821,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0,0,0,0,0,0,0.100966449948148,0,0,0,0,0,0,0.887943813496259,0.62799699626633,0.839423081820392,0,0,0,0,0,0,0,0,1.89038500578056,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145346416632329,0,0,0,0,0,0,0.118635018124174,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr3:155177407..155177427,+ | |||
}} | }} |
Latest revision as of 06:46, 6 August 2015
Short description: | p@chr3:155177407..155177427, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:155177407..155177427, + |
Coexpression cluster: | MCL_coexpression_mm9:415 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.63e-16 | 25 |
endo-epithelial cell | 6.08e-14 | 15 |
columnar/cuboidal epithelial cell | 1.74e-13 | 7 |
hematopoietic lineage restricted progenitor cell | 2.56e-13 | 25 |
brush border epithelial cell | 3.74e-12 | 6 |
gut absorptive cell | 3.74e-12 | 6 |
enterocyte | 3.74e-12 | 6 |
endodermal cell | 4.73e-12 | 20 |
hematopoietic cell | 4.13e-11 | 32 |
hematopoietic oligopotent progenitor cell | 4.13e-11 | 32 |
hematopoietic stem cell | 4.13e-11 | 32 |
hematopoietic multipotent progenitor cell | 4.13e-11 | 32 |
connective tissue cell | 1.96e-10 | 46 |
mesenchymal cell | 1.96e-10 | 46 |
intestinal epithelial cell | 3.53e-10 | 9 |
epithelial cell of alimentary canal | 3.53e-10 | 9 |
motile cell | 2.74e-09 | 54 |
leukocyte | 1.15e-08 | 17 |
nongranular leukocyte | 1.15e-08 | 17 |
megakaryocyte progenitor cell | 3.34e-08 | 6 |
megakaryocyte | 3.34e-08 | 6 |
lymphoid lineage restricted progenitor cell | 7.12e-08 | 12 |
lymphocyte | 3.53e-07 | 13 |
common lymphoid progenitor | 3.53e-07 | 13 |
defensive cell | 6.61e-07 | 7 |
myeloid lineage restricted progenitor cell | 8.36e-07 | 13 |
myeloid cell | 8.94e-07 | 16 |
Ontology term | p-value | n |
---|---|---|
mucosa | 2.38e-17 | 15 |
intestinal mucosa | 1.54e-13 | 13 |
wall of intestine | 1.54e-13 | 13 |
gastrointestinal system mucosa | 1.54e-13 | 13 |
connective tissue | 1.96e-10 | 46 |
simple columnar epithelium | 2.46e-10 | 11 |
epithelium of mucosa | 3.53e-10 | 9 |
gastrointestinal system epithelium | 3.53e-10 | 9 |
intestinal epithelium | 3.53e-10 | 9 |
organ component layer | 8.50e-10 | 24 |
bone marrow | 8.94e-07 | 16 |