FFCP PHASE1:Mm9::chr15:77670701..77670706,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=105 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr15:77670701..77670706,+ | |||
|description=CAGE_peak_at_chr15:77670701..77670706,+ | |description=CAGE_peak_at_chr15:77670701..77670706,+ | ||
|id=chr15:77670701..77670706,+ | |id=chr15:77670701..77670706,+ | ||
|ontology_enrichment_celltype=CL:0000066!7.71e-22!25;CL:0002563!4.20e-19!9;CL:0002251!4.20e-19!9;CL:0000223!9.60e-19!20;CL:0002076!8.68e-16!15;CL:0000239!4.11e-13!6;CL:0000677!4.11e-13!6;CL:0000212!4.11e-13!6;CL:0000584!4.11e-13!6;CL:0000075!4.21e-11!7;CL:0000063!5.56e-09!66;CL:0002250!1.45e-07!3;CL:0000473!2.45e-07!3;CL:0000627!2.45e-07!3;CL:0000682!2.45e-07!3 | |ontology_enrichment_celltype=CL:0000066!7.71e-22!25;CL:0002563!4.20e-19!9;CL:0002251!4.20e-19!9;CL:0000223!9.60e-19!20;CL:0002076!8.68e-16!15;CL:0000239!4.11e-13!6;CL:0000677!4.11e-13!6;CL:0000212!4.11e-13!6;CL:0000584!4.11e-13!6;CL:0000075!4.21e-11!7;CL:0000063!5.56e-09!66;CL:0002250!1.45e-07!3;CL:0000473!2.45e-07!3;CL:0000627!2.45e-07!3;CL:0000682!2.45e-07!3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002563,3.13e-49,9;CL:0002251,3.13e-49,9;CL:0000066,2.94e-48,25;CL:0000223,1.34e-38,20;CL:0000239,7.13e-33,6;CL:0000677,7.13e-33,6;CL:0000584,7.13e-33,6;CL:0002076,3.48e-29,15;CL:0000075,3.78e-28,7;CL:0002250,8.20e-18,3;CL:0000682,3.35e-17,3;CL:0000182,1.49e-10,5;CL:0002321,6.22e-10,70;CL:0000473,1.10e-07,7;CL:0000213,7.89e-07,1;CL:0002078,7.89e-07,1;CL:0000115,7.89e-07,1;CL:0002262,7.89e-07,1;CL:1000398,7.89e-07,1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003350!4.20e-19!9;UBERON:0004808!4.20e-19!9;UBERON:0001277!4.20e-19!9;UBERON:0000344!1.90e-18!15;UBERON:0000485!3.05e-15!11;UBERON:0001242!3.39e-15!13;UBERON:0000060!3.39e-15!13;UBERON:0001262!3.39e-15!13;UBERON:0004786!3.39e-15!13;UBERON:0004923!3.34e-12!24;UBERON:0000160!1.24e-08!43;UBERON:0004119!4.04e-08!130;UBERON:0000925!4.04e-08!130;UBERON:0006595!4.04e-08!130;UBERON:0001007!1.32e-07!128;UBERON:0001555!1.32e-07!128;UBERON:0007026!1.32e-07!128;UBERON:0005409!8.10e-07!59 | |ontology_enrichment_uberon=UBERON:0003350!4.20e-19!9;UBERON:0004808!4.20e-19!9;UBERON:0001277!4.20e-19!9;UBERON:0000344!1.90e-18!15;UBERON:0000485!3.05e-15!11;UBERON:0001242!3.39e-15!13;UBERON:0000060!3.39e-15!13;UBERON:0001262!3.39e-15!13;UBERON:0004786!3.39e-15!13;UBERON:0004923!3.34e-12!24;UBERON:0000160!1.24e-08!43;UBERON:0004119!4.04e-08!130;UBERON:0000925!4.04e-08!130;UBERON:0006595!4.04e-08!130;UBERON:0001007!1.32e-07!128;UBERON:0001555!1.32e-07!128;UBERON:0007026!1.32e-07!128;UBERON:0005409!8.10e-07!59 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003350,3.13e-49,9;UBERON:0004808,3.13e-49,9;UBERON:0001277,3.13e-49,9;UBERON:0000485,3.99e-40,11;UBERON:0001242,8.14e-34,13;UBERON:0001262,8.14e-34,13;UBERON:0004786,8.14e-34,13;UBERON:0000344,3.48e-29,15;UBERON:0004923,7.15e-18,24;UBERON:0000160,1.34e-13,31;UBERON:0003929,4.39e-13,55;UBERON:0000490,1.24e-10,66;UBERON:0005911,4.23e-10,69;UBERON:0005409,1.36e-08,47;UBERON:0002394,7.89e-07,1;UBERON:0001281,7.89e-07,1;UBERON:0000353,7.89e-07,1;UBERON:0003497,7.89e-07,1;UBERON:0003909,7.89e-07,1;UBERON:0003928,7.89e-07,1;UBERON:0003835,7.89e-07,1;UBERON:0003513,7.89e-07,1;UBERON:0001280,7.89e-07,1;UBERON:0004647,7.89e-07,1;UBERON:0002294,7.89e-07,1;UBERON:0001173,7.89e-07,1;UBERON:0004912,7.89e-07,1;UBERON:0005171,7.89e-07,1 | |||
|phase1_expression=0,3.83872948403297,2.27499619694768,4.83942738090928,1.00179145989269,5.03637815735669,3.50418960893289,0,0.140788722151667,0.70219357896598,0,0,0.171200729931206,0,0,0,0,0.157731082679119,0,0,0.0850432901510698,0,0,0.47997726838022,0.45881856213434,3.44539178469012,4.30761996159075,2.80112602491656,0.190023419456374,0,0,0,0,0,10.1098066912946,1.82858109894342,11.0251452381679,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0.194429899074283,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0755715601067855,3.47837386442013,0,6.79971333707751,1.07940638327563,0,0,0,0,0,0,0,0,0,0,0.649473123033642,0.506719730950197,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264450566663544,0,0,0,0,0,0,0,0,0.251335208800269,0,0,0,0.216138049874694,0.199141273254367,0,0.228497025219458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283076530788832,0,0,0,0,0,0,0,0,0,0,0,1.32023555829129,0,0.614870295887855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23467170806371,0,0.441056796109924,0,0,0,0,0.164140899745061,0,0,0,0,0,0,0,0,0.169978429993855,0.139951452323658,0.414599921413271,0,0,0,0,0,0,0.134864346384821,0,0,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19318959403219,0.563047426353546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,3.83872948403297,2.27499619694768,4.83942738090928,1.00179145989269,5.03637815735669,3.50418960893289,0,0.140788722151667,0.70219357896598,0,0,0.171200729931206,0,0,0,0,0.157731082679119,0,0,0.0850432901510698,0,0,0.47997726838022,0.45881856213434,3.44539178469012,4.30761996159075,2.80112602491656,0.190023419456374,0,0,0,0,0,10.1098066912946,1.82858109894342,11.0251452381679,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0.194429899074283,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0755715601067855,3.47837386442013,0,6.79971333707751,1.07940638327563,0,0,0,0,0,0,0,0,0,0,0.649473123033642,0.506719730950197,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264450566663544,0,0,0,0,0,0,0,0,0.251335208800269,0,0,0,0.216138049874694,0.199141273254367,0,0.228497025219458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162964976442026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283076530788832,0,0,0,0,0,0,0,0,0,0,0,1.32023555829129,0,0.614870295887855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23467170806371,0,0.441056796109924,0,0,0,0,0.164140899745061,0,0,0,0,0,0,0,0,0.169978429993855,0.139951452323658,0.414599921413271,0,0,0,0,0,0,0.134864346384821,0,0,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19318959403219,0.563047426353546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr15:77670701..77670706,+ | |short_description=p@chr15:77670701..77670706,+ | ||
}} | }} |
Latest revision as of 13:50, 5 August 2015
Short description: | p@chr15:77670701..77670706, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr15:77670701..77670706, + |
Coexpression cluster: | MCL_coexpression_mm9:105 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 3.13e-49 | 9 |
epithelial cell of alimentary canal | 3.13e-49 | 9 |
epithelial cell | 2.94e-48 | 25 |
endodermal cell | 1.34e-38 | 20 |
brush border epithelial cell | 7.13e-33 | 6 |
gut absorptive cell | 7.13e-33 | 6 |
enterocyte | 7.13e-33 | 6 |
endo-epithelial cell | 3.48e-29 | 15 |
columnar/cuboidal epithelial cell | 3.78e-28 | 7 |
intestinal crypt stem cell | 8.20e-18 | 3 |
M cell of gut | 3.35e-17 | 3 |
hepatocyte | 1.49e-10 | 5 |
embryonic cell | 6.22e-10 | 70 |
defensive cell | 1.10e-07 | 7 |
lining cell | 7.89e-07 | 1 |
meso-epithelial cell | 7.89e-07 | 1 |
endothelial cell | 7.89e-07 | 1 |
endothelial cell of sinusoid | 7.89e-07 | 1 |
endothelial cell of hepatic sinusoid | 7.89e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
epithelium of mucosa | 3.13e-49 | 9 |
gastrointestinal system epithelium | 3.13e-49 | 9 |
intestinal epithelium | 3.13e-49 | 9 |
simple columnar epithelium | 3.99e-40 | 11 |
intestinal mucosa | 8.14e-34 | 13 |
wall of intestine | 8.14e-34 | 13 |
gastrointestinal system mucosa | 8.14e-34 | 13 |
mucosa | 3.48e-29 | 15 |
organ component layer | 7.15e-18 | 24 |
intestine | 1.34e-13 | 31 |
gut epithelium | 4.39e-13 | 55 |
unilaminar epithelium | 1.24e-10 | 66 |
endo-epithelium | 4.23e-10 | 69 |
gastrointestinal system | 1.36e-08 | 47 |
bile duct | 7.89e-07 | 1 |
hepatic sinusoid | 7.89e-07 | 1 |
parenchyma | 7.89e-07 | 1 |
abdomen blood vessel | 7.89e-07 | 1 |
sinusoid | 7.89e-07 | 1 |
digestive system duct | 7.89e-07 | 1 |
abdominal segment blood vessel | 7.89e-07 | 1 |
trunk blood vessel | 7.89e-07 | 1 |
liver parenchyma | 7.89e-07 | 1 |
liver lobule | 7.89e-07 | 1 |
biliary system | 7.89e-07 | 1 |
biliary tree | 7.89e-07 | 1 |
biliary bud | 7.89e-07 | 1 |
hepatic duct | 7.89e-07 | 1 |