FFCP PHASE1:Mm9::chr4:42929982..42930008,+: Difference between revisions
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{{FFCP|EntrezGene=230085|HGNC=|MCL_coexpression_id=1|UniProt=Q80TL4,A2AG27|association_with_transcript=-114bp_to_ENSMUST00000107976,NM_172690,uc008soj.1,uc008sok.1_5end|description=CAGE_peak_3_at_N28178_5end|id=chr4:42929982..42930008,+|ontology_enrichment_celltype=CL:0000117!4.67e-17!23;CL:0000337!4.67e-17!23;CL:0000540!4.67e-12!33;CL:0000047!4.67e-12!33;CL:0000031!4.67e-12!33;CL:0000404!4.67e-12!33;CL:0000393!8.64e-09!39;CL:0000211!8.64e-09!39;CL:0002319!1.85e-08!43;CL:0000221!4.61e-08!44;CL:0000133!4.61e-08!44|ontology_enrichment_celltype_v019_2=CL:0000117,5.10e-18,23;CL:0000337,5.10e-18,23;CL:0000540,1.64e-11,33;CL:0000047,1.64e-11,33;CL:0000031,1.64e-11,33;CL:0000404,1.64e-11,33;CL:0000393,3.17e-09,39;CL:0000211,3.17e-09,39;CL:0002319,4.61e-08,43;CL:0000221,8.33e-08,44;CL:0000133,8.33e-08,44;CL:0002610,1.00e-07,3;CL:0002612,5.06e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!4.48e-24!73;UBERON:0005743!4.48e-24!73;UBERON:0001049!9.32e-24!52;UBERON:0005068!9.32e-24!52;UBERON:0006241!9.32e-24!52;UBERON:0007135!9.32e-24!52;UBERON:0002020!1.16e-23!34;UBERON:0000073!1.18e-23!75;UBERON:0001016!1.18e-23!75;UBERON:0000955!4.70e-22!50;UBERON:0006238!4.70e-22!50;UBERON:0002616!2.63e-21!49;UBERON:0002346!1.68e-20!71;UBERON:0003075!1.68e-20!71;UBERON:0007284!1.68e-20!71;UBERON:0000033!5.66e-20!63;UBERON:0002791!2.49e-19!29;UBERON:0003528!2.49e-19!29;UBERON:0001893!2.49e-19!29;UBERON:0004121!4.11e-19!102;UBERON:0000924!4.11e-19!102;UBERON:0006601!4.11e-19!102;UBERON:0003080!4.06e-17!40;UBERON:0003056!1.82e-16!49;UBERON:0002780!2.25e-16!39;UBERON:0001890!2.25e-16!39;UBERON:0006240!2.25e-16!39;UBERON:0000956!2.25e-13!21;UBERON:0001869!2.25e-13!21;UBERON:0000203!2.25e-13!21;UBERON:0007811!1.08e-11!86;UBERON:0002619!1.72e-11!17;UBERON:0002021!8.56e-11!10;UBERON:0000411!8.56e-11!10;UBERON:0001950!8.56e-11!10;UBERON:0000153!2.50e-09!94;UBERON:0000025!4.41e-09!114;UBERON:0004111!6.35e-09!122;UBERON:0003076!2.74e-07!12;UBERON:0003057!2.74e-07!12;UBERON:0002420!3.42e-07!8;UBERON:0007245!3.42e-07!8;UBERON:0010009!3.42e-07!8;UBERON:0010011!3.42e-07!8;UBERON:0000454!3.42e-07!8|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.30e-45,54;UBERON:0001049,3.52e-41,52;UBERON:0005068,3.52e-41,52;UBERON:0006241,3.52e-41,52;UBERON:0007135,3.52e-41,52;UBERON:0001017,4.49e-40,73;UBERON:0001016,8.53e-39,75;UBERON:0002020,6.41e-37,34;UBERON:0002346,4.59e-32,64;UBERON:0003075,4.59e-32,64;UBERON:0007284,4.59e-32,64;UBERON:0000955,8.37e-32,47;UBERON:0006238,8.37e-32,47;UBERON:0002616,3.16e-30,46;UBERON:0004121,5.84e-29,95;UBERON:0000924,5.84e-29,95;UBERON:0006601,5.84e-29,95;UBERON:0003528,2.04e-27,29;UBERON:0002791,2.04e-27,29;UBERON:0001893,2.04e-27,29;UBERON:0010371,3.43e-27,73;UBERON:0003080,3.48e-25,40;UBERON:0002021,8.95e-24,10;UBERON:0000411,8.95e-24,10;UBERON:0001950,8.95e-24,10;UBERON:0002780,1.26e-23,39;UBERON:0001890,1.26e-23,39;UBERON:0006240,1.26e-23,39;UBERON:0010314,4.98e-20,92;UBERON:0003056,1.63e-19,49;UBERON:0002619,2.77e-18,17;UBERON:0000956,6.36e-17,21;UBERON:0001869,6.36e-17,21;UBERON:0000203,6.36e-17,21;UBERON:0003076,7.75e-17,12;UBERON:0003057,7.75e-17,12;UBERON:0000025,1.03e-14,114;UBERON:0004111,2.94e-13,122;UBERON:0002240,3.19e-13,6;UBERON:0005174,3.19e-13,6;UBERON:0001137,3.19e-13,6;UBERON:0002420,6.08e-12,8;UBERON:0007245,6.08e-12,8;UBERON:0010009,6.08e-12,8;UBERON:0010011,6.08e-12,8;UBERON:0000454,6.08e-12,8;UBERON:0001948,3.10e-11,5;UBERON:0002315,3.10e-11,5;UBERON:0000369,4.97e-10,5;UBERON:0002435,4.97e-10,5;UBERON:0000204,4.97e-10,5;UBERON:0010082,4.97e-10,5;UBERON:0011216,5.02e-10,194;UBERON:0004684,1.00e-07,3;UBERON:0002275,1.00e-07,3;UBERON:0000483,4.61e-07,174;UBERON:0002257,5.06e-07,3;UBERON:0000119,6.73e-07,176|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19060606211498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21389876515759,1.05798195854407,0.633831403506179,0,0,0,0,0,0.299600110518405,0,0.207379224616955,0.135005938331691,0.841299845405528,5.42736870367227,4.41737081903227,0.489963196859816,0.575072826109418,0.919218786610021,6.60695285996332,3.83062014255563,3.68655679814984,2.90149833006426,2.8361169516747,1.04182674111352,5.30447698102624,0.56276261003168,1.68078072554491,3.83017161115768,3.13217697758026,2.60959224155421,0.075726193333184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0.150722640552623,0.117588707135705,0.125666591329675,0,0,0,0,0,0,0,3.22058876712702,1.46612694769419,0,0,0,0,2.84602214869163,3.66000482254901,1.00523481690292,5.38855392596057,6.64860189058859,4.1557608911912,3.24482526135515,0.203678727700633,0,0,0,0,0,0,0.150704817835715,0.204109497453984,0.384341160854549,0.281105173679186,0.517406741478031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393528463494808,0,0.465067889500816,0.268273401399619,0.116765342367169,0.329119699826961,0.656669856316381,0.0810688095458557,0.438599962275997,0.219550115291051,0.671032093801859,2.73376933133365,1.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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:230085 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q80TL4,uniprot:A2AG27 | |||
|association_with_transcript=-114bp_to_ENSMUST00000107976,NM_172690,uc008soj.1,uc008sok.1_5end | |||
|cluster_id=chr4:42929982..42930008,+ | |||
|description=CAGE_peak_3_at_N28178_5end | |||
|id=chr4:42929982..42930008,+ | |||
|ontology_enrichment_celltype=CL:0000117!4.67e-17!23;CL:0000337!4.67e-17!23;CL:0000540!4.67e-12!33;CL:0000047!4.67e-12!33;CL:0000031!4.67e-12!33;CL:0000404!4.67e-12!33;CL:0000393!8.64e-09!39;CL:0000211!8.64e-09!39;CL:0002319!1.85e-08!43;CL:0000221!4.61e-08!44;CL:0000133!4.61e-08!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.10e-18,23;CL:0000337,5.10e-18,23;CL:0000540,1.64e-11,33;CL:0000047,1.64e-11,33;CL:0000031,1.64e-11,33;CL:0000404,1.64e-11,33;CL:0000393,3.17e-09,39;CL:0000211,3.17e-09,39;CL:0002319,4.61e-08,43;CL:0000221,8.33e-08,44;CL:0000133,8.33e-08,44;CL:0002610,1.00e-07,3;CL:0002612,5.06e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.48e-24!73;UBERON:0005743!4.48e-24!73;UBERON:0001049!9.32e-24!52;UBERON:0005068!9.32e-24!52;UBERON:0006241!9.32e-24!52;UBERON:0007135!9.32e-24!52;UBERON:0002020!1.16e-23!34;UBERON:0000073!1.18e-23!75;UBERON:0001016!1.18e-23!75;UBERON:0000955!4.70e-22!50;UBERON:0006238!4.70e-22!50;UBERON:0002616!2.63e-21!49;UBERON:0002346!1.68e-20!71;UBERON:0003075!1.68e-20!71;UBERON:0007284!1.68e-20!71;UBERON:0000033!5.66e-20!63;UBERON:0002791!2.49e-19!29;UBERON:0003528!2.49e-19!29;UBERON:0001893!2.49e-19!29;UBERON:0004121!4.11e-19!102;UBERON:0000924!4.11e-19!102;UBERON:0006601!4.11e-19!102;UBERON:0003080!4.06e-17!40;UBERON:0003056!1.82e-16!49;UBERON:0002780!2.25e-16!39;UBERON:0001890!2.25e-16!39;UBERON:0006240!2.25e-16!39;UBERON:0000956!2.25e-13!21;UBERON:0001869!2.25e-13!21;UBERON:0000203!2.25e-13!21;UBERON:0007811!1.08e-11!86;UBERON:0002619!1.72e-11!17;UBERON:0002021!8.56e-11!10;UBERON:0000411!8.56e-11!10;UBERON:0001950!8.56e-11!10;UBERON:0000153!2.50e-09!94;UBERON:0000025!4.41e-09!114;UBERON:0004111!6.35e-09!122;UBERON:0003076!2.74e-07!12;UBERON:0003057!2.74e-07!12;UBERON:0002420!3.42e-07!8;UBERON:0007245!3.42e-07!8;UBERON:0010009!3.42e-07!8;UBERON:0010011!3.42e-07!8;UBERON:0000454!3.42e-07!8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.30e-45,54;UBERON:0001049,3.52e-41,52;UBERON:0005068,3.52e-41,52;UBERON:0006241,3.52e-41,52;UBERON:0007135,3.52e-41,52;UBERON:0001017,4.49e-40,73;UBERON:0001016,8.53e-39,75;UBERON:0002020,6.41e-37,34;UBERON:0002346,4.59e-32,64;UBERON:0003075,4.59e-32,64;UBERON:0007284,4.59e-32,64;UBERON:0000955,8.37e-32,47;UBERON:0006238,8.37e-32,47;UBERON:0002616,3.16e-30,46;UBERON:0004121,5.84e-29,95;UBERON:0000924,5.84e-29,95;UBERON:0006601,5.84e-29,95;UBERON:0003528,2.04e-27,29;UBERON:0002791,2.04e-27,29;UBERON:0001893,2.04e-27,29;UBERON:0010371,3.43e-27,73;UBERON:0003080,3.48e-25,40;UBERON:0002021,8.95e-24,10;UBERON:0000411,8.95e-24,10;UBERON:0001950,8.95e-24,10;UBERON:0002780,1.26e-23,39;UBERON:0001890,1.26e-23,39;UBERON:0006240,1.26e-23,39;UBERON:0010314,4.98e-20,92;UBERON:0003056,1.63e-19,49;UBERON:0002619,2.77e-18,17;UBERON:0000956,6.36e-17,21;UBERON:0001869,6.36e-17,21;UBERON:0000203,6.36e-17,21;UBERON:0003076,7.75e-17,12;UBERON:0003057,7.75e-17,12;UBERON:0000025,1.03e-14,114;UBERON:0004111,2.94e-13,122;UBERON:0002240,3.19e-13,6;UBERON:0005174,3.19e-13,6;UBERON:0001137,3.19e-13,6;UBERON:0002420,6.08e-12,8;UBERON:0007245,6.08e-12,8;UBERON:0010009,6.08e-12,8;UBERON:0010011,6.08e-12,8;UBERON:0000454,6.08e-12,8;UBERON:0001948,3.10e-11,5;UBERON:0002315,3.10e-11,5;UBERON:0000369,4.97e-10,5;UBERON:0002435,4.97e-10,5;UBERON:0000204,4.97e-10,5;UBERON:0010082,4.97e-10,5;UBERON:0011216,5.02e-10,194;UBERON:0004684,1.00e-07,3;UBERON:0002275,1.00e-07,3;UBERON:0000483,4.61e-07,174;UBERON:0002257,5.06e-07,3;UBERON:0000119,6.73e-07,176 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19060606211498,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21389876515759,1.05798195854407,0.633831403506179,0,0,0,0,0,0.299600110518405,0,0.207379224616955,0.135005938331691,0.841299845405528,5.42736870367227,4.41737081903227,0.489963196859816,0.575072826109418,0.919218786610021,6.60695285996332,3.83062014255563,3.68655679814984,2.90149833006426,2.8361169516747,1.04182674111352,5.30447698102624,0.56276261003168,1.68078072554491,3.83017161115768,3.13217697758026,2.60959224155421,0.075726193333184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0.150722640552623,0.117588707135705,0.125666591329675,0,0,0,0,0,0,0,3.22058876712702,1.46612694769419,0,0,0,0,2.84602214869163,3.66000482254901,1.00523481690292,5.38855392596057,6.64860189058859,4.1557608911912,3.24482526135515,0.203678727700633,0,0,0,0,0,0,0.150704817835715,0.204109497453984,0.384341160854549,0.281105173679186,0.517406741478031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393528463494808,0,0.465067889500816,0.268273401399619,0.116765342367169,0.329119699826961,0.656669856316381,0.0810688095458557,0.438599962275997,0.219550115291051,0.671032093801859,2.73376933133365,1.44066457330998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193952487167626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.390267295715598,0,0,0,0.163863314715738,0,0.144649058581512,0,0,0,0,4.49541651965817,3.28192722458169,0,0,0,0,0.215423397732799,0.238968797952552,0,0,0,0,0,1.60660658210904,0.141940085208269,0,0.162886959353576,0,0,0,0,0,0,0,0,0.363533729477506,0.356497378384721,0,0,0,0,0,0,0,0,0.178368817602071,0.329098041204242,0,0,0,0.220528398054962,0.32977250588296,0,0.0603129249281559,0,0,0.291480836629851,3.8939313422207,0.341741761595705,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0.218362563746178,0.134864346384821,0.0826534557253359,0,0,0,0,0,0,0,0.258319646955462,0,0,0,0.104859344425711,0,0,0,0,0,0,0,0,0,0,0,0,0.100826185136841,0.0974578807397524,0.0962118416403295,0,0,0,0,0,0.386379188064381,0,0,0,0,4.51801474093653,5.9842280745933,3.43737308063638,5.32744865265431,10.9613203163303,7.55393897389701,8.10027000278167,5.40385443869065,6.79713613476307,8.80192529978094,0,0,0,0,0.209613162627982,0.551530525350042,0.222246727801615,0,0.320919209591815,0.252697211763798,0,0.377252682772152,0.280924522409647,0.192075457214608,0.402048282689293,0.476293691283074,0.579421629724277,0,0.412085900803307,0.294397840268795,0.342869252385415,0.177475806159338,0,0.145346416632329,0.0941093804153306,0.0846146078916765,0.365855945745545,0.263069711437843,0.271608227691724,0.561142271657738,0.593175090620871,0.197008964751127,0,0.154936841185966,0,0.249810577937946,0.467863216890817,0.214871054048298,0,0,0 | |||
|short_description=p3@N28178 | |||
}} |
Revision as of 11:20, 5 August 2015
Short description: | p3@N28178 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_N28178_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -114bp_to_ENSMUST00000107976, NM_172690, uc008soj.1, uc008sok.1_5end |
EntrezGene: | 230085 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.10e-18 | 23 |
neuroblast (sensu Vertebrata) | 5.10e-18 | 23 |
neuron | 1.64e-11 | 33 |
neuronal stem cell | 1.64e-11 | 33 |
neuroblast | 1.64e-11 | 33 |
electrically signaling cell | 1.64e-11 | 33 |
electrically responsive cell | 3.17e-09 | 39 |
electrically active cell | 3.17e-09 | 39 |
neural cell | 4.61e-08 | 43 |
ectodermal cell | 8.33e-08 | 44 |
neurectodermal cell | 8.33e-08 | 44 |
raphe nuclei neuron | 1.00e-07 | 3 |
neuron of the ventral spinal cord | 5.06e-07 | 3 |