FFCP PHASE1:Mm9::chr7:53493886..53493908,-: Difference between revisions
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{{FFCP|EntrezGene=72088|HGNC=|MCL_coexpression_id=12|UniProt=E9QMN1|association_with_transcript=-13bp_to_ENSMUST00000009667_5end|description=CAGE_peak_1_at_Ush1c_5end|id=chr7:53493886..53493908,-|ontology_enrichment_celltype=CL:0002563!1.37e-07!9;CL:0002251!1.37e-07!9|ontology_enrichment_celltype_v019_2=CL:0002563,6.27e-09,9;CL:0002251,6.27e-09,9;CL:0000075,1.32e-07,7;CL:0000239,6.90e-07,6;CL:0000677,6.90e-07,6;CL:0000584,6.90e-07,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!3.29e-23!43;UBERON:0005409!9.06e-20!59;UBERON:0000344!4.77e-12!15;UBERON:0001242!1.33e-10!13;UBERON:0000060!1.33e-10!13;UBERON:0001262!1.33e-10!13;UBERON:0004786!1.33e-10!13;UBERON:0000485!1.04e-08!11;UBERON:0003350!1.37e-07!9;UBERON:0004808!1.37e-07!9;UBERON:0001277!1.37e-07!9;UBERON:0004923!2.44e-07!24|ontology_enrichment_uberon_v019_2=UBERON:0000160,9.64e-27,31;UBERON:0005409,2.68e-19,47;UBERON:0000344,2.28e-14,15;UBERON:0001242,1.32e-12,13;UBERON:0001262,1.32e-12,13;UBERON:0004786,1.32e-12,13;UBERON:0000485,2.70e-10,11;UBERON:0003350,6.27e-09,9;UBERON:0004808,6.27e-09,9;UBERON:0001277,6.27e-09,9;UBERON:0004923,1.02e-07,24|phase1_expression=30.1079832557013,198.218031539157,160.614731504506,196.904201560746,186.333211540041,97.0342191650723,89.9408666292774,0,0,0,0,0,0,0,0,0,0,0,0,0,6.63337663178344,0,0,140.953324480991,114.245821971451,137.815671387605,149.04365067104,142.211013572687,190.973536553656,130.047546956124,107.317567157167,0,0,0,55.1706593724934,48.5405164446798,55.5340649033644,0,0,0,0,0,0,0.125896817975577,0.608261587317087,0.734187008646726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.338844532069132,0,0,0,0,0,0,0,0,0,0.285650984403804,0,0,0,0,0,0.255374676170375,0,0,0,0,0,0,0.30559649555362,0,0,0,0,0,0.579728977403356,0,0,0,0,0,11.5164424508037,0,0,0,79.5765321738245,0,0,0,0,0,0,28.7743376892031,0,0,0,0,0.230615497256059,0.150722640552623,0.117588707135705,0.376999773989026,5.93267922562497,0,0,0,0.441683036920787,0,93.1958806090611,0,0,143.31140797202,0,0,0,0,0,0,0,0,0,0,3.05518091550949,0.622034853050465,1.0108910337347,0,0,0.459804208866946,0,0,0.136072998302656,0.12811372028485,0.0937017245597288,0.517406741478031,0,0.567318240503458,0,0,0,0,0,1.19420560091096,0,0,0,0.621377317606506,1.64168241986767,1.2604344302271,1.18372367792605,2.16440654922144,1.3884040159864,3.25547522650571,2.68273401399619,2.45207218971056,3.45575684818309,4.92502392237286,4.45878452502207,5.84799949701329,3.51280184465681,2.54992195644706,0,0,240.544874012205,107.366930065399,3.41261200856374,8.82499353069666,19.8455890436024,52.2360328774457,78.944205564929,84.8406292462014,125.275672247751,115.124569352084,105.309452487313,107.038581958139,105.865499305682,105.161870812544,120.605031830079,141.788586557109,1.51734320762465,4.68418901699888,14.6520056375005,16.0884548997798,19.2012962295949,24.8982160610631,39.080179942791,53.8777040125548,49.6115979978744,49.1120712408766,0,0,0.786235980452812,0,0,0,0,0,0,0,0,0,0,0.252578877947112,0,0,0,0,0.162964976442026,0.339490171550376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.757412781613119,0.315508219416257,0,0,0,0,0,0,0,0,0,0.141940085208269,0.35613120733451,0,0,0,6.5550771761845,3.62788268357701,2.45186603682668,2.06711325016541,3.68922177532713,26.6181141963268,5.81653967164009,3.92147116223193,0.316036757935816,1.05418608574999,2.06271086496374,19.7454971337197,0.18006109403131,1.4229455216103,3.42939256050548,4.61084607469911,5.88617098086833,5.26556865926787,3.65357938937519,0.23467170806371,0.42366414172764,0,0,0,0,0,0,125.045278914206,0,0,0,0.185194527369712,0,0,0,0,0,0,0,0.316335993581135,1.21991680276109,7.45236851670429,1.46361807210128,6.33251434863915,0.674321731924103,1.1571483801547,0.26175594198403,104.85851339306,0,0,0.149516546043979,0,0.194451188344048,0.516639293910924,0,0.352071715937262,0.2604087696879,0.104859344425711,0,0,0,0.202725215290164,0.308132871494482,0.129920822977795,0,0.198681354781265,0.120195449519969,0,0,0,0.100826185136841,0.292373642219257,0.0962118416403295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,1.19707462020309,0.341467211508268,1.21553358534147,1.46729213839588,4.04455718590031,6.00066165064361,2.67845574410562,7.06022261101994,5.05394423527595,4.81610669791456,5.09291121742406,4.58843386602424,4.28968521112624,4.25022470271538,3.81034953026459,5.09891034157364,4.05109362973781,3.70877310722976,7.35994600671987,5.82877729055206,4.08194354166476,3.81497903915713,4.21504608233753,5.27012530325851,4.56918882615053,4.93905526756486,3.41990624869196,4.75314398460516,7.2948495315506,5.45721083371201,4.0386837773981,4.09231043169689,6.66228417099654,4.82266527452853,0,5.14649538579898,9.23945532407683,0.191288332068843,0.441182838239031,0.231867835620421|short_description=p1@Ush1c}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:72088 | |||
|HGNC= | |||
|MCL_coexpression_id=12 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:E9QMN1 | |||
|association_with_transcript=-13bp_to_ENSMUST00000009667_5end | |||
|cluster_id=chr7:53493886..53493908,- | |||
|description=CAGE_peak_1_at_Ush1c_5end | |||
|id=chr7:53493886..53493908,- | |||
|ontology_enrichment_celltype=CL:0002563!1.37e-07!9;CL:0002251!1.37e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,6.27e-09,9;CL:0002251,6.27e-09,9;CL:0000075,1.32e-07,7;CL:0000239,6.90e-07,6;CL:0000677,6.90e-07,6;CL:0000584,6.90e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!3.29e-23!43;UBERON:0005409!9.06e-20!59;UBERON:0000344!4.77e-12!15;UBERON:0001242!1.33e-10!13;UBERON:0000060!1.33e-10!13;UBERON:0001262!1.33e-10!13;UBERON:0004786!1.33e-10!13;UBERON:0000485!1.04e-08!11;UBERON:0003350!1.37e-07!9;UBERON:0004808!1.37e-07!9;UBERON:0001277!1.37e-07!9;UBERON:0004923!2.44e-07!24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,9.64e-27,31;UBERON:0005409,2.68e-19,47;UBERON:0000344,2.28e-14,15;UBERON:0001242,1.32e-12,13;UBERON:0001262,1.32e-12,13;UBERON:0004786,1.32e-12,13;UBERON:0000485,2.70e-10,11;UBERON:0003350,6.27e-09,9;UBERON:0004808,6.27e-09,9;UBERON:0001277,6.27e-09,9;UBERON:0004923,1.02e-07,24 | |||
|phase1_expression=30.1079832557013,198.218031539157,160.614731504506,196.904201560746,186.333211540041,97.0342191650723,89.9408666292774,0,0,0,0,0,0,0,0,0,0,0,0,0,6.63337663178344,0,0,140.953324480991,114.245821971451,137.815671387605,149.04365067104,142.211013572687,190.973536553656,130.047546956124,107.317567157167,0,0,0,55.1706593724934,48.5405164446798,55.5340649033644,0,0,0,0,0,0,0.125896817975577,0.608261587317087,0.734187008646726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.338844532069132,0,0,0,0,0,0,0,0,0,0.285650984403804,0,0,0,0,0,0.255374676170375,0,0,0,0,0,0,0.30559649555362,0,0,0,0,0,0.579728977403356,0,0,0,0,0,11.5164424508037,0,0,0,79.5765321738245,0,0,0,0,0,0,28.7743376892031,0,0,0,0,0.230615497256059,0.150722640552623,0.117588707135705,0.376999773989026,5.93267922562497,0,0,0,0.441683036920787,0,93.1958806090611,0,0,143.31140797202,0,0,0,0,0,0,0,0,0,0,3.05518091550949,0.622034853050465,1.0108910337347,0,0,0.459804208866946,0,0,0.136072998302656,0.12811372028485,0.0937017245597288,0.517406741478031,0,0.567318240503458,0,0,0,0,0,1.19420560091096,0,0,0,0.621377317606506,1.64168241986767,1.2604344302271,1.18372367792605,2.16440654922144,1.3884040159864,3.25547522650571,2.68273401399619,2.45207218971056,3.45575684818309,4.92502392237286,4.45878452502207,5.84799949701329,3.51280184465681,2.54992195644706,0,0,240.544874012205,107.366930065399,3.41261200856374,8.82499353069666,19.8455890436024,52.2360328774457,78.944205564929,84.8406292462014,125.275672247751,115.124569352084,105.309452487313,107.038581958139,105.865499305682,105.161870812544,120.605031830079,141.788586557109,1.51734320762465,4.68418901699888,14.6520056375005,16.0884548997798,19.2012962295949,24.8982160610631,39.080179942791,53.8777040125548,49.6115979978744,49.1120712408766,0,0,0.786235980452812,0,0,0,0,0,0,0,0,0,0,0.252578877947112,0,0,0,0,0.162964976442026,0.339490171550376,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.757412781613119,0.315508219416257,0,0,0,0,0,0,0,0,0,0.141940085208269,0.35613120733451,0,0,0,6.5550771761845,3.62788268357701,2.45186603682668,2.06711325016541,3.68922177532713,26.6181141963268,5.81653967164009,3.92147116223193,0.316036757935816,1.05418608574999,2.06271086496374,19.7454971337197,0.18006109403131,1.4229455216103,3.42939256050548,4.61084607469911,5.88617098086833,5.26556865926787,3.65357938937519,0.23467170806371,0.42366414172764,0,0,0,0,0,0,125.045278914206,0,0,0,0.185194527369712,0,0,0,0,0,0,0,0.316335993581135,1.21991680276109,7.45236851670429,1.46361807210128,6.33251434863915,0.674321731924103,1.1571483801547,0.26175594198403,104.85851339306,0,0,0.149516546043979,0,0.194451188344048,0.516639293910924,0,0.352071715937262,0.2604087696879,0.104859344425711,0,0,0,0.202725215290164,0.308132871494482,0.129920822977795,0,0.198681354781265,0.120195449519969,0,0,0,0.100826185136841,0.292373642219257,0.0962118416403295,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103787347584177,1.19707462020309,0.341467211508268,1.21553358534147,1.46729213839588,4.04455718590031,6.00066165064361,2.67845574410562,7.06022261101994,5.05394423527595,4.81610669791456,5.09291121742406,4.58843386602424,4.28968521112624,4.25022470271538,3.81034953026459,5.09891034157364,4.05109362973781,3.70877310722976,7.35994600671987,5.82877729055206,4.08194354166476,3.81497903915713,4.21504608233753,5.27012530325851,4.56918882615053,4.93905526756486,3.41990624869196,4.75314398460516,7.2948495315506,5.45721083371201,4.0386837773981,4.09231043169689,6.66228417099654,4.82266527452853,0,5.14649538579898,9.23945532407683,0.191288332068843,0.441182838239031,0.231867835620421 | |||
|short_description=p1@Ush1c | |||
}} |
Revision as of 09:33, 5 August 2015
Short description: | p1@Ush1c |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ush1c_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | -13bp_to_ENSMUST00000009667_5end |
EntrezGene: | 72088 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 6.27e-09 | 9 |
epithelial cell of alimentary canal | 6.27e-09 | 9 |
columnar/cuboidal epithelial cell | 1.32e-07 | 7 |
brush border epithelial cell | 6.90e-07 | 6 |
gut absorptive cell | 6.90e-07 | 6 |
enterocyte | 6.90e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
intestine | 9.64e-27 | 31 |
gastrointestinal system | 2.68e-19 | 47 |
mucosa | 2.28e-14 | 15 |
intestinal mucosa | 1.32e-12 | 13 |
wall of intestine | 1.32e-12 | 13 |
gastrointestinal system mucosa | 1.32e-12 | 13 |
simple columnar epithelium | 2.70e-10 | 11 |
epithelium of mucosa | 6.27e-09 | 9 |
gastrointestinal system epithelium | 6.27e-09 | 9 |
intestinal epithelium | 6.27e-09 | 9 |
organ component layer | 1.02e-07 | 24 |