FFCP PHASE1:Mm9::chr9:56483667..56483687,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=235402|HGNC=|MCL_coexpression_id=2|UniProt=A9DA50|association_with_transcript=-232bp_to_ENSMUST00000114256_5end|description=CAGE_peak_3_at_Lingo1_5end|id=chr9:56483667..56483687,-|ontology_enrichment_celltype=CL:0000117!6.49e-13!23;CL:0000337!6.49e-13!23;CL:0000221!1.39e-12!44;CL:0000133!1.39e-12!44;CL:0002319!2.12e-12!43;CL:0000055!5.65e-11!50;CL:0000540!7.80e-11!33;CL:0000047!7.80e-11!33;CL:0000031!7.80e-11!33;CL:0000404!7.80e-11!33;CL:0000393!7.56e-10!39;CL:0000211!7.56e-10!39|ontology_enrichment_celltype_v019_2=CL:0000117,5.50e-18,23;CL:0000337,5.50e-18,23;CL:0002319,2.27e-12,43;CL:0000221,6.15e-12,44;CL:0000133,6.15e-12,44;CL:0000540,6.94e-11,33;CL:0000047,6.94e-11,33;CL:0000031,6.94e-11,33;CL:0000404,6.94e-11,33;CL:0000393,2.25e-09,39;CL:0000211,2.25e-09,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.84e-28!75;UBERON:0001016!2.84e-28!75;UBERON:0004121!6.50e-28!102;UBERON:0000924!6.50e-28!102;UBERON:0006601!6.50e-28!102;UBERON:0001017!7.89e-28!73;UBERON:0005743!7.89e-28!73;UBERON:0000033!4.05e-24!63;UBERON:0002346!1.58e-23!71;UBERON:0003075!1.58e-23!71;UBERON:0007284!1.58e-23!71;UBERON:0001049!2.35e-22!52;UBERON:0005068!2.35e-22!52;UBERON:0006241!2.35e-22!52;UBERON:0007135!2.35e-22!52;UBERON:0000955!2.90e-21!50;UBERON:0006238!2.90e-21!50;UBERON:0003056!7.51e-21!49;UBERON:0002616!1.35e-20!49;UBERON:0002020!7.32e-18!34;UBERON:0003080!4.23e-17!40;UBERON:0002780!1.92e-16!39;UBERON:0001890!1.92e-16!39;UBERON:0006240!1.92e-16!39;UBERON:0002791!1.48e-14!29;UBERON:0003528!1.48e-14!29;UBERON:0001893!1.48e-14!29;UBERON:0007811!6.98e-12!86;UBERON:0000153!2.02e-10!94;UBERON:0000956!4.06e-10!21;UBERON:0001869!4.06e-10!21;UBERON:0000203!4.06e-10!21;UBERON:0002021!4.07e-09!10;UBERON:0000411!4.07e-09!10;UBERON:0001950!4.07e-09!10;UBERON:0002619!7.17e-09!17|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.18e-37,54;UBERON:0001016,2.15e-36,75;UBERON:0001017,3.59e-36,73;UBERON:0002346,2.63e-35,64;UBERON:0003075,2.63e-35,64;UBERON:0007284,2.63e-35,64;UBERON:0004121,3.00e-34,95;UBERON:0000924,3.00e-34,95;UBERON:0006601,3.00e-34,95;UBERON:0001049,4.62e-34,52;UBERON:0005068,4.62e-34,52;UBERON:0006241,4.62e-34,52;UBERON:0007135,4.62e-34,52;UBERON:0010371,2.35e-29,73;UBERON:0002020,4.92e-29,34;UBERON:0000955,4.91e-28,47;UBERON:0006238,4.91e-28,47;UBERON:0003056,8.30e-28,49;UBERON:0002616,7.66e-27,46;UBERON:0003080,1.76e-24,40;UBERON:0002780,2.79e-23,39;UBERON:0001890,2.79e-23,39;UBERON:0006240,2.79e-23,39;UBERON:0003528,9.85e-23,29;UBERON:0002791,9.85e-23,29;UBERON:0001893,9.85e-23,29;UBERON:0010314,8.45e-22,92;UBERON:0002021,2.23e-16,10;UBERON:0000411,2.23e-16,10;UBERON:0001950,2.23e-16,10;UBERON:0000956,2.49e-14,21;UBERON:0001869,2.49e-14,21;UBERON:0000203,2.49e-14,21;UBERON:0002619,3.44e-14,17;UBERON:0000025,9.58e-12,114;UBERON:0004111,3.09e-10,122;UBERON:0002420,7.88e-10,8;UBERON:0007245,7.88e-10,8;UBERON:0010009,7.88e-10,8;UBERON:0010011,7.88e-10,8;UBERON:0000454,7.88e-10,8;UBERON:0003076,9.01e-10,12;UBERON:0003057,9.01e-10,12;UBERON:0002240,1.86e-08,6;UBERON:0005174,1.86e-08,6;UBERON:0001137,1.86e-08,6;UBERON:0001948,1.22e-07,5;UBERON:0002315,1.22e-07,5;UBERON:0000119,3.36e-07,176;UBERON:0000483,7.04e-07,174;UBERON:0000369,9.26e-07,5;UBERON:0002435,9.26e-07,5;UBERON:0000204,9.26e-07,5;UBERON:0010082,9.26e-07,5|phase1_expression=0.960893082628764,0,0,0,0,0,0,0.129123323441576,0.140788722151667,0.234064526321993,0,0,0,0,0,0,0,0,0,0,4.16712121740242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1330713617802,0.912392380975631,0.734187008646726,2.34717403304412,1.30815093828268,0,0,0.839918529752175,2.87505128729943,0,0,0,0,0,0,4.45096213891115,7.93486468908049,4.43681982454325,0.677689064138264,1.77858959222228,0.449949858640699,0.988866362566974,0,0.898800331555214,2.68952813725088,0.207379224616955,0.945041568321835,1.05162480675691,7.9982275633065,5.74258206474195,0.61245399607477,0.862609239164127,2.75765635983006,12.1127469099328,13.0241084846891,10.2916377281683,1.97829431595291,2.56165402086747,2.6045668527838,3.07101298901519,1.68828783009504,4.27835093775068,6.18720029494702,4.27115042397309,6.33758115806022,0.227178579999552,1.13357340160178,0,0,0,0.539703191637817,0,0,0.561777680527007,0,0,0,0.563373679106722,0,0,0,0,0,0,1.02765491747154,0,0,0.173485326766136,1.52232739156071,0,0.301445281105245,0.23517741427141,0,0,0,0,0,0,0,0,0,0.41889341362691,0,0,0,0,6.14141621559773,19.6725259212009,2.76439574648302,55.2761338211439,48.8416523500931,9.14267396062064,12.1680947300818,0.611036183101898,1.61729061793121,4.80173241023982,0.631325567659422,0.390361328888111,0.919608417733892,2.52086981727489,1.50704817835715,2.65342346690179,2.17793324484245,1.3118241438362,1.81092359517311,0,0.189106080167819,0.175951124163949,0,0.278047249225598,0,0.205782136407943,0.398068533636986,0,0,0,0.207125772535502,0,0,0.23674473558521,0,0,0,0,0.116765342367169,0.16455984991348,0,0.0810688095458557,0,0,0.134206418760372,22.9216043934899,2.77842453424068,0,0,0.426576501070468,0.232236671860439,0,0,0.22237804384487,0,0,0.494096864172033,0,0.397912944082302,0,0,0,0,0,0.114248512609729,0,0.203651327845314,0,0.210407459670956,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37898282354097,0.488894929326078,0.169745085775188,0,0.335012514883631,0.238043640886014,0,0.157635144106191,0,0,0.163863314715738,0,0,0,0,0,0,2.56880943980467,4.21962071731931,0,0,0.315508219416257,0,0.430846795465598,0,0.445597348164788,0.566153061577665,0.404810701674894,0.292255857911312,0,4.4984984299053,0,0.534196811001766,0.81443479676788,0,0,0,0.604647113929502,0.188605079755898,0.295301892880773,0,0,0.727067458955011,0,0.316036757935816,0,0,0,0.18006109403131,0.646793418913773,0.214337035031592,1.24138163549592,1.07021290561242,0.822745103010605,1.8267896946876,0,0,0,0.16488625294148,0.807322133479528,0.120625849856312,0.238744688006273,0.492422699235184,0,1.66882771809459,0,0.206386867963223,0.925972636848558,0,0.410082683163076,0,0,0,0,0,0.790839983952838,0.406638934253697,0,0,0,0,0,0,0,0,0,0.299033092087958,0.330916980914195,0,0.258319646955462,0.168956125490778,0.469428954583016,0.13020438484395,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167884616364078,0.19318959403219,0,0.183151624267265,0,0,52.5219213633872,41.4292712856459,49.2690141557881,51.2122483384189,57.546931660734,79.3163592259185,52.6517550180809,68.4488228900815,52.5645194421677,84.9126911272985,0.31136204275253,0.399024873401031,0.512200817262403,0.729320151204882,0.628839487883947,0.735374033800057,0.888986911206461,0.618105171716683,0.64183841918363,0.252697211763798,0,0.565879024158229,1.40462261204824,0.704276676453562,0.804096565378586,1.42888107384922,0.811190281613988,0.38581844092741,0.824171801606613,0.294397840268795,1.02860775715625,0.887379030796687,0.476872379894642,0.872078499793971,0.752875043322645,0.507687647350059,0.182927972872773,0.526139422875686,0.679020569229309,0.561142271657738,0.237270036248348,0.886540341380071,0.818462086339379,0.309873682371932,0.578719832943424,2.99772693525535,1.16965804222704,0.859484216193193,0.57386499620653,0,0.231867835620421|short_description=p3@Lingo1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:235402 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:A9DA50 | |||
|association_with_transcript=-232bp_to_ENSMUST00000114256_5end | |||
|cluster_id=chr9:56483667..56483687,- | |||
|description=CAGE_peak_3_at_Lingo1_5end | |||
|id=chr9:56483667..56483687,- | |||
|ontology_enrichment_celltype=CL:0000117!6.49e-13!23;CL:0000337!6.49e-13!23;CL:0000221!1.39e-12!44;CL:0000133!1.39e-12!44;CL:0002319!2.12e-12!43;CL:0000055!5.65e-11!50;CL:0000540!7.80e-11!33;CL:0000047!7.80e-11!33;CL:0000031!7.80e-11!33;CL:0000404!7.80e-11!33;CL:0000393!7.56e-10!39;CL:0000211!7.56e-10!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.50e-18,23;CL:0000337,5.50e-18,23;CL:0002319,2.27e-12,43;CL:0000221,6.15e-12,44;CL:0000133,6.15e-12,44;CL:0000540,6.94e-11,33;CL:0000047,6.94e-11,33;CL:0000031,6.94e-11,33;CL:0000404,6.94e-11,33;CL:0000393,2.25e-09,39;CL:0000211,2.25e-09,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.84e-28!75;UBERON:0001016!2.84e-28!75;UBERON:0004121!6.50e-28!102;UBERON:0000924!6.50e-28!102;UBERON:0006601!6.50e-28!102;UBERON:0001017!7.89e-28!73;UBERON:0005743!7.89e-28!73;UBERON:0000033!4.05e-24!63;UBERON:0002346!1.58e-23!71;UBERON:0003075!1.58e-23!71;UBERON:0007284!1.58e-23!71;UBERON:0001049!2.35e-22!52;UBERON:0005068!2.35e-22!52;UBERON:0006241!2.35e-22!52;UBERON:0007135!2.35e-22!52;UBERON:0000955!2.90e-21!50;UBERON:0006238!2.90e-21!50;UBERON:0003056!7.51e-21!49;UBERON:0002616!1.35e-20!49;UBERON:0002020!7.32e-18!34;UBERON:0003080!4.23e-17!40;UBERON:0002780!1.92e-16!39;UBERON:0001890!1.92e-16!39;UBERON:0006240!1.92e-16!39;UBERON:0002791!1.48e-14!29;UBERON:0003528!1.48e-14!29;UBERON:0001893!1.48e-14!29;UBERON:0007811!6.98e-12!86;UBERON:0000153!2.02e-10!94;UBERON:0000956!4.06e-10!21;UBERON:0001869!4.06e-10!21;UBERON:0000203!4.06e-10!21;UBERON:0002021!4.07e-09!10;UBERON:0000411!4.07e-09!10;UBERON:0001950!4.07e-09!10;UBERON:0002619!7.17e-09!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.18e-37,54;UBERON:0001016,2.15e-36,75;UBERON:0001017,3.59e-36,73;UBERON:0002346,2.63e-35,64;UBERON:0003075,2.63e-35,64;UBERON:0007284,2.63e-35,64;UBERON:0004121,3.00e-34,95;UBERON:0000924,3.00e-34,95;UBERON:0006601,3.00e-34,95;UBERON:0001049,4.62e-34,52;UBERON:0005068,4.62e-34,52;UBERON:0006241,4.62e-34,52;UBERON:0007135,4.62e-34,52;UBERON:0010371,2.35e-29,73;UBERON:0002020,4.92e-29,34;UBERON:0000955,4.91e-28,47;UBERON:0006238,4.91e-28,47;UBERON:0003056,8.30e-28,49;UBERON:0002616,7.66e-27,46;UBERON:0003080,1.76e-24,40;UBERON:0002780,2.79e-23,39;UBERON:0001890,2.79e-23,39;UBERON:0006240,2.79e-23,39;UBERON:0003528,9.85e-23,29;UBERON:0002791,9.85e-23,29;UBERON:0001893,9.85e-23,29;UBERON:0010314,8.45e-22,92;UBERON:0002021,2.23e-16,10;UBERON:0000411,2.23e-16,10;UBERON:0001950,2.23e-16,10;UBERON:0000956,2.49e-14,21;UBERON:0001869,2.49e-14,21;UBERON:0000203,2.49e-14,21;UBERON:0002619,3.44e-14,17;UBERON:0000025,9.58e-12,114;UBERON:0004111,3.09e-10,122;UBERON:0002420,7.88e-10,8;UBERON:0007245,7.88e-10,8;UBERON:0010009,7.88e-10,8;UBERON:0010011,7.88e-10,8;UBERON:0000454,7.88e-10,8;UBERON:0003076,9.01e-10,12;UBERON:0003057,9.01e-10,12;UBERON:0002240,1.86e-08,6;UBERON:0005174,1.86e-08,6;UBERON:0001137,1.86e-08,6;UBERON:0001948,1.22e-07,5;UBERON:0002315,1.22e-07,5;UBERON:0000119,3.36e-07,176;UBERON:0000483,7.04e-07,174;UBERON:0000369,9.26e-07,5;UBERON:0002435,9.26e-07,5;UBERON:0000204,9.26e-07,5;UBERON:0010082,9.26e-07,5 | |||
|phase1_expression=0.960893082628764,0,0,0,0,0,0,0.129123323441576,0.140788722151667,0.234064526321993,0,0,0,0,0,0,0,0,0,0,4.16712121740242,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1330713617802,0.912392380975631,0.734187008646726,2.34717403304412,1.30815093828268,0,0,0.839918529752175,2.87505128729943,0,0,0,0,0,0,4.45096213891115,7.93486468908049,4.43681982454325,0.677689064138264,1.77858959222228,0.449949858640699,0.988866362566974,0,0.898800331555214,2.68952813725088,0.207379224616955,0.945041568321835,1.05162480675691,7.9982275633065,5.74258206474195,0.61245399607477,0.862609239164127,2.75765635983006,12.1127469099328,13.0241084846891,10.2916377281683,1.97829431595291,2.56165402086747,2.6045668527838,3.07101298901519,1.68828783009504,4.27835093775068,6.18720029494702,4.27115042397309,6.33758115806022,0.227178579999552,1.13357340160178,0,0,0,0.539703191637817,0,0,0.561777680527007,0,0,0,0.563373679106722,0,0,0,0,0,0,1.02765491747154,0,0,0.173485326766136,1.52232739156071,0,0.301445281105245,0.23517741427141,0,0,0,0,0,0,0,0,0,0.41889341362691,0,0,0,0,6.14141621559773,19.6725259212009,2.76439574648302,55.2761338211439,48.8416523500931,9.14267396062064,12.1680947300818,0.611036183101898,1.61729061793121,4.80173241023982,0.631325567659422,0.390361328888111,0.919608417733892,2.52086981727489,1.50704817835715,2.65342346690179,2.17793324484245,1.3118241438362,1.81092359517311,0,0.189106080167819,0.175951124163949,0,0.278047249225598,0,0.205782136407943,0.398068533636986,0,0,0,0.207125772535502,0,0,0.23674473558521,0,0,0,0,0.116765342367169,0.16455984991348,0,0.0810688095458557,0,0,0.134206418760372,22.9216043934899,2.77842453424068,0,0,0.426576501070468,0.232236671860439,0,0,0.22237804384487,0,0,0.494096864172033,0,0.397912944082302,0,0,0,0,0,0.114248512609729,0,0.203651327845314,0,0.210407459670956,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37898282354097,0.488894929326078,0.169745085775188,0,0.335012514883631,0.238043640886014,0,0.157635144106191,0,0,0.163863314715738,0,0,0,0,0,0,2.56880943980467,4.21962071731931,0,0,0.315508219416257,0,0.430846795465598,0,0.445597348164788,0.566153061577665,0.404810701674894,0.292255857911312,0,4.4984984299053,0,0.534196811001766,0.81443479676788,0,0,0,0.604647113929502,0.188605079755898,0.295301892880773,0,0,0.727067458955011,0,0.316036757935816,0,0,0,0.18006109403131,0.646793418913773,0.214337035031592,1.24138163549592,1.07021290561242,0.822745103010605,1.8267896946876,0,0,0,0.16488625294148,0.807322133479528,0.120625849856312,0.238744688006273,0.492422699235184,0,1.66882771809459,0,0.206386867963223,0.925972636848558,0,0.410082683163076,0,0,0,0,0,0.790839983952838,0.406638934253697,0,0,0,0,0,0,0,0,0,0.299033092087958,0.330916980914195,0,0.258319646955462,0.168956125490778,0.469428954583016,0.13020438484395,0,0,0,0,0,0.102710957164827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167884616364078,0.19318959403219,0,0.183151624267265,0,0,52.5219213633872,41.4292712856459,49.2690141557881,51.2122483384189,57.546931660734,79.3163592259185,52.6517550180809,68.4488228900815,52.5645194421677,84.9126911272985,0.31136204275253,0.399024873401031,0.512200817262403,0.729320151204882,0.628839487883947,0.735374033800057,0.888986911206461,0.618105171716683,0.64183841918363,0.252697211763798,0,0.565879024158229,1.40462261204824,0.704276676453562,0.804096565378586,1.42888107384922,0.811190281613988,0.38581844092741,0.824171801606613,0.294397840268795,1.02860775715625,0.887379030796687,0.476872379894642,0.872078499793971,0.752875043322645,0.507687647350059,0.182927972872773,0.526139422875686,0.679020569229309,0.561142271657738,0.237270036248348,0.886540341380071,0.818462086339379,0.309873682371932,0.578719832943424,2.99772693525535,1.16965804222704,0.859484216193193,0.57386499620653,0,0.231867835620421 | |||
|short_description=p3@Lingo1 | |||
}} |
Revision as of 08:38, 5 August 2015
Short description: | p3@Lingo1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Lingo1_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | -232bp_to_ENSMUST00000114256_5end |
EntrezGene: | 235402 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.50e-18 | 23 |
neuroblast (sensu Vertebrata) | 5.50e-18 | 23 |
neural cell | 2.27e-12 | 43 |
ectodermal cell | 6.15e-12 | 44 |
neurectodermal cell | 6.15e-12 | 44 |
neuron | 6.94e-11 | 33 |
neuronal stem cell | 6.94e-11 | 33 |
neuroblast | 6.94e-11 | 33 |
electrically signaling cell | 6.94e-11 | 33 |
electrically responsive cell | 2.25e-09 | 39 |
electrically active cell | 2.25e-09 | 39 |