FFCP PHASE1:Mm9::chr2:180069640..180069660,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=14464|HGNC=|MCL_coexpression_id=12|UniProt=P97489|association_with_transcript=-236bp_to_ENSMUST00000015771_5end|description=CAGE_peak_4_at_Gata5_5end|id=chr2:180069640..180069660,-|ontology_enrichment_celltype=CL:0002563!8.53e-11!9;CL:0002251!8.53e-11!9;CL:0000239!8.45e-08!6;CL:0000677!8.45e-08!6;CL:0000212!8.45e-08!6;CL:0000584!8.45e-08!6|ontology_enrichment_celltype_v019_2=CL:0002563,6.51e-21,9;CL:0002251,6.51e-21,9;CL:0000239,1.23e-14,6;CL:0000677,1.23e-14,6;CL:0000584,1.23e-14,6;CL:0000075,1.90e-12,7;CL:0002076,7.05e-12,15;CL:0000066,1.11e-11,25;CL:0000223,1.69e-08,20;CL:0002250,7.56e-08,3;CL:0000682,1.05e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005409!5.75e-22!59;UBERON:0000160!4.82e-20!43;UBERON:0000344!2.59e-17!15;UBERON:0001242!2.12e-15!13;UBERON:0000060!2.12e-15!13;UBERON:0001262!2.12e-15!13;UBERON:0004786!2.12e-15!13;UBERON:0001007!2.22e-12!128;UBERON:0001555!2.22e-12!128;UBERON:0007026!2.22e-12!128;UBERON:0004119!6.09e-12!130;UBERON:0000925!6.09e-12!130;UBERON:0006595!6.09e-12!130;UBERON:0004921!3.62e-11!126;UBERON:0004185!3.62e-11!126;UBERON:0003350!8.53e-11!9;UBERON:0004808!8.53e-11!9;UBERON:0001277!8.53e-11!9;UBERON:0004923!6.99e-09!24;UBERON:0000485!2.41e-08!11;UBERON:0002048!1.11e-07!14;UBERON:0000117!1.11e-07!14;UBERON:0000171!1.11e-07!14;UBERON:0000170!1.11e-07!14;UBERON:0005597!1.11e-07!14;UBERON:0000118!1.11e-07!14|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.99e-55,31;UBERON:0005409,5.56e-40,47;UBERON:0000344,1.24e-34,15;UBERON:0001242,1.34e-30,13;UBERON:0001262,1.34e-30,13;UBERON:0004786,1.34e-30,13;UBERON:0003350,6.51e-21,9;UBERON:0004808,6.51e-21,9;UBERON:0001277,6.51e-21,9;UBERON:0004923,2.48e-20,24;UBERON:0000485,8.33e-17,11;UBERON:0001007,7.22e-16,116;UBERON:0001555,7.22e-16,116;UBERON:0007026,7.22e-16,116;UBERON:0004119,1.75e-15,118;UBERON:0000925,1.75e-15,118;UBERON:0006595,1.75e-15,118;UBERON:0004921,8.53e-14,114;UBERON:0002108,5.27e-11,4;UBERON:0000331,1.56e-08,3;UBERON:0002116,1.56e-08,3;UBERON:0001204,1.56e-08,3;UBERON:0001168,1.56e-08,3|phase1_expression=0,5.23463111459042,5.0049916332849,7.56160528267075,8.5152274090879,1.84667199103079,1.40167584357315,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,2.55987876469451,2.52350209173887,5.16808767703518,2.15380998079537,2.80112602491656,7.9809836171677,7.30887376303799,3.10422714917427,0,0,0,3.46621943701529,3.49092755252834,3.26670970019791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561777680527007,0,0,0,0,0,0,0,0,0,0,1.25602267690966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.17462576667492,0,0,0,0,0,0,0,0,0,0,0.101839363850316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.469052119962192,0.36012412292203,0,0,0.462801338662135,0,0.268273401399619,0,0,0,0,0.146199987425332,0,0.134206418760372,0,0,9.58214470653014,7.40461586657924,0.213288250535234,0,0.515469845288373,2.01683524623343,1.33426826306922,3.80451252225118,6.16887780007865,5.43506550589236,4.02136334080431,6.56556357735798,5.06906626509712,8.08937467788799,6.26800344636613,5.77509692437665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369506380333209,1.13694847062291,0.488894929326078,0.509235257325564,0,0.167506257441816,0,0.585400943573396,0.630540576424764,0.8858587585951,0.637819074629948,0.163863314715738,0.172684981865896,0.289298117163023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162886959353576,0.164970122972535,0,0,0,0,0,0,2.06742634534577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.57850175237612,0,0,0,0,0,0,0,0,0,0,2.86401185404534,0.316335993581135,0,0.108005340821801,0.627264888043406,0.436725127492355,0.539457385539283,0.495920734352016,2.35580347785627,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579568782096571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170733605754134,0,0,0.183843508450014,0.222246727801615,0.412070114477788,0,0.252697211763798,0.50695859978048,0.188626341386076,0.187283014939765,0.256100609619477,0.287177344778066,0,0,0.964546102318525,0,0.147198920134397,0,0.177475806159338,0.476872379894642,0,0.376437521661322,0.169229215783353,0,0.263069711437843,0.407412341537585,0,0,0.0985044823755635,0.409231043169689,0,0.192906610981141,0,0,0.214871054048298,0,0,0|short_description=p4@Gata5}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:14464 | |||
|HGNC= | |||
|MCL_coexpression_id=12 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P97489 | |||
|association_with_transcript=-236bp_to_ENSMUST00000015771_5end | |||
|cluster_id=chr2:180069640..180069660,- | |||
|description=CAGE_peak_4_at_Gata5_5end | |||
|id=chr2:180069640..180069660,- | |||
|ontology_enrichment_celltype=CL:0002563!8.53e-11!9;CL:0002251!8.53e-11!9;CL:0000239!8.45e-08!6;CL:0000677!8.45e-08!6;CL:0000212!8.45e-08!6;CL:0000584!8.45e-08!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,6.51e-21,9;CL:0002251,6.51e-21,9;CL:0000239,1.23e-14,6;CL:0000677,1.23e-14,6;CL:0000584,1.23e-14,6;CL:0000075,1.90e-12,7;CL:0002076,7.05e-12,15;CL:0000066,1.11e-11,25;CL:0000223,1.69e-08,20;CL:0002250,7.56e-08,3;CL:0000682,1.05e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!5.75e-22!59;UBERON:0000160!4.82e-20!43;UBERON:0000344!2.59e-17!15;UBERON:0001242!2.12e-15!13;UBERON:0000060!2.12e-15!13;UBERON:0001262!2.12e-15!13;UBERON:0004786!2.12e-15!13;UBERON:0001007!2.22e-12!128;UBERON:0001555!2.22e-12!128;UBERON:0007026!2.22e-12!128;UBERON:0004119!6.09e-12!130;UBERON:0000925!6.09e-12!130;UBERON:0006595!6.09e-12!130;UBERON:0004921!3.62e-11!126;UBERON:0004185!3.62e-11!126;UBERON:0003350!8.53e-11!9;UBERON:0004808!8.53e-11!9;UBERON:0001277!8.53e-11!9;UBERON:0004923!6.99e-09!24;UBERON:0000485!2.41e-08!11;UBERON:0002048!1.11e-07!14;UBERON:0000117!1.11e-07!14;UBERON:0000171!1.11e-07!14;UBERON:0000170!1.11e-07!14;UBERON:0005597!1.11e-07!14;UBERON:0000118!1.11e-07!14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.99e-55,31;UBERON:0005409,5.56e-40,47;UBERON:0000344,1.24e-34,15;UBERON:0001242,1.34e-30,13;UBERON:0001262,1.34e-30,13;UBERON:0004786,1.34e-30,13;UBERON:0003350,6.51e-21,9;UBERON:0004808,6.51e-21,9;UBERON:0001277,6.51e-21,9;UBERON:0004923,2.48e-20,24;UBERON:0000485,8.33e-17,11;UBERON:0001007,7.22e-16,116;UBERON:0001555,7.22e-16,116;UBERON:0007026,7.22e-16,116;UBERON:0004119,1.75e-15,118;UBERON:0000925,1.75e-15,118;UBERON:0006595,1.75e-15,118;UBERON:0004921,8.53e-14,114;UBERON:0002108,5.27e-11,4;UBERON:0000331,1.56e-08,3;UBERON:0002116,1.56e-08,3;UBERON:0001204,1.56e-08,3;UBERON:0001168,1.56e-08,3 | |||
|phase1_expression=0,5.23463111459042,5.0049916332849,7.56160528267075,8.5152274090879,1.84667199103079,1.40167584357315,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,2.55987876469451,2.52350209173887,5.16808767703518,2.15380998079537,2.80112602491656,7.9809836171677,7.30887376303799,3.10422714917427,0,0,0,3.46621943701529,3.49092755252834,3.26670970019791,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561777680527007,0,0,0,0,0,0,0,0,0,0,1.25602267690966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.17462576667492,0,0,0,0,0,0,0,0,0,0,0.101839363850316,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.469052119962192,0.36012412292203,0,0,0.462801338662135,0,0.268273401399619,0,0,0,0,0.146199987425332,0,0.134206418760372,0,0,9.58214470653014,7.40461586657924,0.213288250535234,0,0.515469845288373,2.01683524623343,1.33426826306922,3.80451252225118,6.16887780007865,5.43506550589236,4.02136334080431,6.56556357735798,5.06906626509712,8.08937467788799,6.26800344636613,5.77509692437665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369506380333209,1.13694847062291,0.488894929326078,0.509235257325564,0,0.167506257441816,0,0.585400943573396,0.630540576424764,0.8858587585951,0.637819074629948,0.163863314715738,0.172684981865896,0.289298117163023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162886959353576,0.164970122972535,0,0,0,0,0,0,2.06742634534577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.57850175237612,0,0,0,0,0,0,0,0,0,0,2.86401185404534,0.316335993581135,0,0.108005340821801,0.627264888043406,0.436725127492355,0.539457385539283,0.495920734352016,2.35580347785627,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579568782096571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.170733605754134,0,0,0.183843508450014,0.222246727801615,0.412070114477788,0,0.252697211763798,0.50695859978048,0.188626341386076,0.187283014939765,0.256100609619477,0.287177344778066,0,0,0.964546102318525,0,0.147198920134397,0,0.177475806159338,0.476872379894642,0,0.376437521661322,0.169229215783353,0,0.263069711437843,0.407412341537585,0,0,0.0985044823755635,0.409231043169689,0,0.192906610981141,0,0,0.214871054048298,0,0,0 | |||
|short_description=p4@Gata5 | |||
}} |
Revision as of 17:21, 4 August 2015
Short description: | p4@Gata5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Gata5_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | -236bp_to_ENSMUST00000015771_5end |
EntrezGene: | 14464 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 6.51e-21 | 9 |
epithelial cell of alimentary canal | 6.51e-21 | 9 |
brush border epithelial cell | 1.23e-14 | 6 |
gut absorptive cell | 1.23e-14 | 6 |
enterocyte | 1.23e-14 | 6 |
columnar/cuboidal epithelial cell | 1.90e-12 | 7 |
endo-epithelial cell | 7.05e-12 | 15 |
epithelial cell | 1.11e-11 | 25 |
endodermal cell | 1.69e-08 | 20 |
intestinal crypt stem cell | 7.56e-08 | 3 |
M cell of gut | 1.05e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
intestine | 2.99e-55 | 31 |
gastrointestinal system | 5.56e-40 | 47 |
mucosa | 1.24e-34 | 15 |
intestinal mucosa | 1.34e-30 | 13 |
wall of intestine | 1.34e-30 | 13 |
gastrointestinal system mucosa | 1.34e-30 | 13 |
epithelium of mucosa | 6.51e-21 | 9 |
gastrointestinal system epithelium | 6.51e-21 | 9 |
intestinal epithelium | 6.51e-21 | 9 |
organ component layer | 2.48e-20 | 24 |
simple columnar epithelium | 8.33e-17 | 11 |
digestive system | 7.22e-16 | 116 |
digestive tract | 7.22e-16 | 116 |
primitive gut | 7.22e-16 | 116 |
endoderm-derived structure | 1.75e-15 | 118 |
endoderm | 1.75e-15 | 118 |
presumptive endoderm | 1.75e-15 | 118 |
subdivision of digestive tract | 8.53e-14 | 114 |
small intestine | 5.27e-11 | 4 |
ileal mucosa | 1.56e-08 | 3 |
ileum | 1.56e-08 | 3 |
mucosa of small intestine | 1.56e-08 | 3 |
wall of small intestine | 1.56e-08 | 3 |