FFCP PHASE1:Mm9::chr3:88425066..88425095,+: Difference between revisions
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{{FFCP|EntrezGene=16800|HGNC=|MCL_coexpression_id=36|UniProt=Q60875|association_with_transcript=38bp_to_ENSMUST00000029694,NM_008487,uc008pvw.2,uc008pvx.2_5end|description=CAGE_peak_1_at_Arhgef2_5end|id=chr3:88425066..88425095,+|ontology_enrichment_celltype=CL:0000988!5.93e-10!32;CL:0002032!5.93e-10!32;CL:0000037!5.93e-10!32;CL:0000566!5.93e-10!32;CL:0000837!5.93e-10!32;CL:0000738!1.21e-08!17;CL:0002087!1.21e-08!17;CL:0000838!2.49e-07!12;CL:0000542!2.56e-07!13;CL:0000051!2.56e-07!13;CL:0000084!5.87e-07!11;CL:0000827!5.87e-07!11;CL:0002031!7.60e-07!25|ontology_enrichment_celltype_v019_2=CL:0000988,5.84e-10,32;CL:0002032,5.84e-10,32;CL:0000037,5.84e-10,32;CL:0000837,5.84e-10,32;CL:0000738,1.21e-08,17;CL:0002087,1.21e-08,17;CL:0000838,2.49e-07,12;CL:0000542,2.56e-07,13;CL:0000051,2.56e-07,13;CL:0000084,5.87e-07,11;CL:0000827,5.87e-07,11;CL:0002031,7.50e-07,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!9.68e-15!45;UBERON:0003061!9.68e-15!45;UBERON:0002193!4.26e-14!48;UBERON:0000065!6.13e-13!41;UBERON:0003081!8.19e-13!88;UBERON:0001004!2.35e-12!42;UBERON:0004177!1.03e-09!29;UBERON:0002370!1.85e-09!23;UBERON:0000974!1.85e-09!23;UBERON:0004807!1.85e-09!23;UBERON:0005058!1.85e-09!23;UBERON:0003351!1.85e-09!23;UBERON:0009113!1.85e-09!23;UBERON:0003295!1.85e-09!23;UBERON:0009722!1.85e-09!23;UBERON:0005562!1.85e-09!23;UBERON:0007690!1.85e-09!23;UBERON:0003408!8.77e-09!24;UBERON:0006562!1.60e-08!24;UBERON:0001557!1.60e-08!24;UBERON:0001042!1.60e-08!24;UBERON:0008814!1.60e-08!24;UBERON:0009145!1.60e-08!24;UBERON:0000072!2.70e-08!27|ontology_enrichment_uberon_v019_2=UBERON:0002390,9.68e-15,45;UBERON:0003061,9.68e-15,45;UBERON:0002193,4.26e-14,48;UBERON:0002405,4.26e-14,48;UBERON:0000065,6.13e-13,41;UBERON:0001004,2.35e-12,42;UBERON:0003081,2.38e-12,87;UBERON:0004177,1.03e-09,29;UBERON:0005057,1.03e-09,29;UBERON:0002370,1.85e-09,23;UBERON:0000974,1.85e-09,23;UBERON:0004807,1.85e-09,23;UBERON:0005058,1.85e-09,23;UBERON:0003351,1.85e-09,23;UBERON:0009113,1.85e-09,23;UBERON:0003295,1.85e-09,23;UBERON:0009722,1.85e-09,23;UBERON:0005562,1.85e-09,23;UBERON:0007690,1.85e-09,23;UBERON:0003408,8.77e-09,24;UBERON:0006562,1.60e-08,24;UBERON:0001557,1.60e-08,24;UBERON:0001042,1.60e-08,24;UBERON:0008814,1.60e-08,24;UBERON:0009145,1.60e-08,24;UBERON:0000072,2.70e-08,27;UBERON:0000077,2.60e-07,35|phase1_expression=12.3314612270691,2.79180326111489,5.91499011206397,0,0,10.0727563147134,9.1108929832255,56.4268923439688,94.3284438416167,136.2255543194,49.6532107853964,57.8348152716189,54.955434307917,54.3754903046164,19.6534759471241,15.9955461237963,7.69518065940961,66.2470547252299,65.4035848299374,62.8096684661085,14.7975324862861,50.8369670148533,37.0903700577288,14.2393256286132,9.86459908588831,3.44539178469012,6.03066794622705,5.60225204983311,1.14014051673824,0.756090389279792,5.32153225572731,19.6859508772486,17.221814052368,0,1.44425809875637,1.16364251750945,1.63335485009895,90.4028322391721,76.5708637633324,72.2462766683842,134.705010759102,124.997323747396,100.98615343048,7.55380907853464,6.58950052926845,12.4811791469943,13.3006528539167,17.2239873540553,13.4008571468028,16.7209713203884,13.4386964760348,11.5002051491977,38.9255646053948,34.0920206745332,37.3064117048135,10.0331180054019,7.44986943840768,8.25075347643908,20.2316460859598,23.2756030879694,16.4796164911607,21.6860500524245,13.3394219416671,68.842328372027,87.0202399058937,78.8632927590171,36.5512134832454,26.5110630671873,48.2156697234421,47.6570962310868,48.5850660721692,13.139945282575,11.9269012113871,38.7070925519255,44.6639894944981,51.4762520501612,17.6185409599022,10.3426743849002,10.2916377281683,20.44237459818,16.3762882048313,18.7528813400434,11.725685958058,4.50210088025344,9.16789486660861,10.9012576625257,8.82704420954438,10.2519695203915,17.4170244666323,27.8103341192971,31.0155002910795,5.16254326188832,0,0,1.29955283489534,0.448026887097336,9.55022056895913,12.4414135481982,9.35229616570328,9.18682893726885,5.91542363062058,8.98285341900225,45.8649431471962,28.4426681261332,21.216122019099,24.8292668165597,22.2430755806505,8.22123933977232,53.3412040313174,7.27366481417641,20.471268558404,14.3098774806706,10.8389283710347,9.3448037142626,11.7588707135705,7.1629957057915,8.40462890296871,14.8937337627509,48.6535803572431,25.2356285917958,31.3594956213759,31.0320162006542,0,8.49064311333487,11.1006754611131,6.13096932500619,75.0042679407061,59.9902730993408,54.7672678684909,9.28701964309901,9.60751265919116,19.0994615211554,8.34356736922927,6.39288643325826,12.259494629014,13.1415423084884,19.8586759508117,26.9963126223902,8.08712826987759,5.47148825304832,22.5108366325477,16.5529515192101,23.0479526150847,21.0986744970001,20.8872052394576,22.4199010498487,18.7403449119458,7.76110112217047,29.1016790459337,31.9589275483615,23.929352886297,24.1115305670332,20.019401944243,24.7259038230738,20.1666493679785,22.8889406841267,46.3460703626735,65.1090205000229,50.5811028924155,31.4831174253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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:16800 | |||
|HGNC= | |||
|MCL_coexpression_id=36 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q60875 | |||
|association_with_transcript=38bp_to_ENSMUST00000029694,NM_008487,uc008pvw.2,uc008pvx.2_5end | |||
|cluster_id=chr3:88425066..88425095,+ | |||
|description=CAGE_peak_1_at_Arhgef2_5end | |||
|id=chr3:88425066..88425095,+ | |||
|ontology_enrichment_celltype=CL:0000988!5.93e-10!32;CL:0002032!5.93e-10!32;CL:0000037!5.93e-10!32;CL:0000566!5.93e-10!32;CL:0000837!5.93e-10!32;CL:0000738!1.21e-08!17;CL:0002087!1.21e-08!17;CL:0000838!2.49e-07!12;CL:0000542!2.56e-07!13;CL:0000051!2.56e-07!13;CL:0000084!5.87e-07!11;CL:0000827!5.87e-07!11;CL:0002031!7.60e-07!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,5.84e-10,32;CL:0002032,5.84e-10,32;CL:0000037,5.84e-10,32;CL:0000837,5.84e-10,32;CL:0000738,1.21e-08,17;CL:0002087,1.21e-08,17;CL:0000838,2.49e-07,12;CL:0000542,2.56e-07,13;CL:0000051,2.56e-07,13;CL:0000084,5.87e-07,11;CL:0000827,5.87e-07,11;CL:0002031,7.50e-07,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!9.68e-15!45;UBERON:0003061!9.68e-15!45;UBERON:0002193!4.26e-14!48;UBERON:0000065!6.13e-13!41;UBERON:0003081!8.19e-13!88;UBERON:0001004!2.35e-12!42;UBERON:0004177!1.03e-09!29;UBERON:0002370!1.85e-09!23;UBERON:0000974!1.85e-09!23;UBERON:0004807!1.85e-09!23;UBERON:0005058!1.85e-09!23;UBERON:0003351!1.85e-09!23;UBERON:0009113!1.85e-09!23;UBERON:0003295!1.85e-09!23;UBERON:0009722!1.85e-09!23;UBERON:0005562!1.85e-09!23;UBERON:0007690!1.85e-09!23;UBERON:0003408!8.77e-09!24;UBERON:0006562!1.60e-08!24;UBERON:0001557!1.60e-08!24;UBERON:0001042!1.60e-08!24;UBERON:0008814!1.60e-08!24;UBERON:0009145!1.60e-08!24;UBERON:0000072!2.70e-08!27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,9.68e-15,45;UBERON:0003061,9.68e-15,45;UBERON:0002193,4.26e-14,48;UBERON:0002405,4.26e-14,48;UBERON:0000065,6.13e-13,41;UBERON:0001004,2.35e-12,42;UBERON:0003081,2.38e-12,87;UBERON:0004177,1.03e-09,29;UBERON:0005057,1.03e-09,29;UBERON:0002370,1.85e-09,23;UBERON:0000974,1.85e-09,23;UBERON:0004807,1.85e-09,23;UBERON:0005058,1.85e-09,23;UBERON:0003351,1.85e-09,23;UBERON:0009113,1.85e-09,23;UBERON:0003295,1.85e-09,23;UBERON:0009722,1.85e-09,23;UBERON:0005562,1.85e-09,23;UBERON:0007690,1.85e-09,23;UBERON:0003408,8.77e-09,24;UBERON:0006562,1.60e-08,24;UBERON:0001557,1.60e-08,24;UBERON:0001042,1.60e-08,24;UBERON:0008814,1.60e-08,24;UBERON:0009145,1.60e-08,24;UBERON:0000072,2.70e-08,27;UBERON:0000077,2.60e-07,35 | |||
|phase1_expression=12.3314612270691,2.79180326111489,5.91499011206397,0,0,10.0727563147134,9.1108929832255,56.4268923439688,94.3284438416167,136.2255543194,49.6532107853964,57.8348152716189,54.955434307917,54.3754903046164,19.6534759471241,15.9955461237963,7.69518065940961,66.2470547252299,65.4035848299374,62.8096684661085,14.7975324862861,50.8369670148533,37.0903700577288,14.2393256286132,9.86459908588831,3.44539178469012,6.03066794622705,5.60225204983311,1.14014051673824,0.756090389279792,5.32153225572731,19.6859508772486,17.221814052368,0,1.44425809875637,1.16364251750945,1.63335485009895,90.4028322391721,76.5708637633324,72.2462766683842,134.705010759102,124.997323747396,100.98615343048,7.55380907853464,6.58950052926845,12.4811791469943,13.3006528539167,17.2239873540553,13.4008571468028,16.7209713203884,13.4386964760348,11.5002051491977,38.9255646053948,34.0920206745332,37.3064117048135,10.0331180054019,7.44986943840768,8.25075347643908,20.2316460859598,23.2756030879694,16.4796164911607,21.6860500524245,13.3394219416671,68.842328372027,87.0202399058937,78.8632927590171,36.5512134832454,26.5110630671873,48.2156697234421,47.6570962310868,48.5850660721692,13.139945282575,11.9269012113871,38.7070925519255,44.6639894944981,51.4762520501612,17.6185409599022,10.3426743849002,10.2916377281683,20.44237459818,16.3762882048313,18.7528813400434,11.725685958058,4.50210088025344,9.16789486660861,10.9012576625257,8.82704420954438,10.2519695203915,17.4170244666323,27.8103341192971,31.0155002910795,5.16254326188832,0,0,1.29955283489534,0.448026887097336,9.55022056895913,12.4414135481982,9.35229616570328,9.18682893726885,5.91542363062058,8.98285341900225,45.8649431471962,28.4426681261332,21.216122019099,24.8292668165597,22.2430755806505,8.22123933977232,53.3412040313174,7.27366481417641,20.471268558404,14.3098774806706,10.8389283710347,9.3448037142626,11.7588707135705,7.1629957057915,8.40462890296871,14.8937337627509,48.6535803572431,25.2356285917958,31.3594956213759,31.0320162006542,0,8.49064311333487,11.1006754611131,6.13096932500619,75.0042679407061,59.9902730993408,54.7672678684909,9.28701964309901,9.60751265919116,19.0994615211554,8.34356736922927,6.39288643325826,12.259494629014,13.1415423084884,19.8586759508117,26.9963126223902,8.08712826987759,5.47148825304832,22.5108366325477,16.5529515192101,23.0479526150847,21.0986744970001,20.8872052394576,22.4199010498487,18.7403449119458,7.76110112217047,29.1016790459337,31.9589275483615,23.929352886297,24.1115305670332,20.019401944243,24.7259038230738,20.1666493679785,22.8889406841267,46.3460703626735,65.1090205000229,50.5811028924155,31.4831174253963,27.2050229578072,23.0479438670099,31.487049832833,32.8596267018164,25.4540736264174,26.9739375910473,22.534965717568,27.4398554562848,23.3674986877142,28.7293062138417,24.8070557210319,23.9767979377545,21.515911298523,27.5123158458762,6.9395683026162,19.6547809644433,2.31293148088659,2.11560453330835,26.0211665652985,26.2427439202296,17.5259747398047,13.3111126251406,15.1217069814512,10.2721838100782,5.69434873853414,7.74085087202851,12.3154252312132,8.95304124185179,8.77338392036041,6.29173586057955,3.45820879799511,4.77939055810481,19.9151296000736,28.3336311272127,31.5581659884625,26.6783239477362,25.7956807932942,25.5995742599663,24.2828302557148,14.465794502001,14.6008816892479,13.3268937035545,3.55743152504579,11.3454671886944,14.545365638377,10.5685192820881,11.3601667977562,11.8176808278684,10.9489116266011,21.0018180339092,11.1873306474774,10.4333337011471,15.814502718009,11.5363693777236,9.98520553966594,4.2938409251009,3.22915344339442,4.82443521363367,29.5605104266567,27.0972718831793,29.6596257124487,37.853154127867,35.9076079881408,43.5516269348721,37.6108952599902,42.1488679372845,45.7141917907954,40.9709675850234,48.4742496718761,34.2474327755892,27.9749670622751,30.0870041849544,36.1899081454253,89.7444378300871,12.2941068254759,11.8652800911035,12.0412942490844,21.2153152731888,9.01642199571715,19.4402613947367,28.7112479668794,28.111589589358,38.3453647964382,32.7387253194996,36.9845798976774,54.3506939114558,45.7436092892631,29.5178416490425,44.2722311300106,13.1741739732941,14.7617688616599,20.6556100254016,20.8495307972577,23.2607873391275,2.65490276679926,16.9946445308487,18.1394134178851,12.6365403436452,19.7852268230118,18.4461088766356,16.5394107627662,15.9954840970102,12.83390562185,6.95280867458795,6.32511651449993,7.21948802737308,4.08527526904546,22.1475145658512,19.1450851998477,13.7175702420219,17.0246624296583,15.161349496176,17.6067452044269,19.790221692449,16.6616912725234,14.8282449604674,2.20528398054962,11.5420377059036,19.6986600569005,12.0625849856312,8.35606408021955,9.02774948597837,6.41257840585672,15.0194494628513,30.2441459012199,32.4027382702259,26.8532064686082,21.8507410125442,20.0940514749907,24.936820879511,75.8103797772595,81.1718423477216,74.9043858019977,5.72802370809068,29.4192474030456,25.0082944566024,20.8450307786076,17.1452402731864,12.6650286972783,12.5423842137883,15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| |||
|short_description=p1@Arhgef2 | |||
}} |
Revision as of 04:17, 4 August 2015
Short description: | p1@Arhgef2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Arhgef2_5end |
Coexpression cluster: | MCL_coexpression_mm9:36 |
Association with transcript: | 38bp_to_ENSMUST00000029694, NM_008487, uc008pvw.2, uc008pvx.2_5end |
EntrezGene: | 16800 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 5.84e-10 | 32 |
hematopoietic oligopotent progenitor cell | 5.84e-10 | 32 |
hematopoietic stem cell | 5.84e-10 | 32 |
hematopoietic multipotent progenitor cell | 5.84e-10 | 32 |
leukocyte | 1.21e-08 | 17 |
nongranular leukocyte | 1.21e-08 | 17 |
lymphoid lineage restricted progenitor cell | 2.49e-07 | 12 |
lymphocyte | 2.56e-07 | 13 |
common lymphoid progenitor | 2.56e-07 | 13 |
T cell | 5.87e-07 | 11 |
pro-T cell | 5.87e-07 | 11 |
hematopoietic lineage restricted progenitor cell | 7.50e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 9.68e-15 | 45 |
blood island | 9.68e-15 | 45 |
hemolymphoid system | 4.26e-14 | 48 |
immune system | 4.26e-14 | 48 |
respiratory tract | 6.13e-13 | 41 |
respiratory system | 2.35e-12 | 42 |
lateral plate mesoderm | 2.38e-12 | 87 |
hemopoietic organ | 1.03e-09 | 29 |
immune organ | 1.03e-09 | 29 |
thymus | 1.85e-09 | 23 |
neck | 1.85e-09 | 23 |
respiratory system epithelium | 1.85e-09 | 23 |
hemolymphoid system gland | 1.85e-09 | 23 |
pharyngeal epithelium | 1.85e-09 | 23 |
thymic region | 1.85e-09 | 23 |
pharyngeal gland | 1.85e-09 | 23 |
entire pharyngeal arch endoderm | 1.85e-09 | 23 |
thymus primordium | 1.85e-09 | 23 |
early pharyngeal endoderm | 1.85e-09 | 23 |
gland of gut | 8.77e-09 | 24 |
pharynx | 1.60e-08 | 24 |
upper respiratory tract | 1.60e-08 | 24 |
chordate pharynx | 1.60e-08 | 24 |
pharyngeal arch system | 1.60e-08 | 24 |
pharyngeal region of foregut | 1.60e-08 | 24 |
segment of respiratory tract | 2.70e-08 | 27 |
mixed endoderm/mesoderm-derived structure | 2.60e-07 | 35 |