FFCP PHASE1:Hg19::chr9:137593007..137593032,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr9:137593007..137593032,+ | |||
|coexpression_cluster_id=C396 | |||
|description=CAGE_peak_at_chr9:137593007..137593032,+ | |description=CAGE_peak_at_chr9:137593007..137593032,+ | ||
|id=chr9:137593007..137593032,+ | |id=chr9:137593007..137593032,+ | ||
|ontology_enrichment_celltype=CL:0000055!1.79e-29!180;CL:0000057!2.67e-19!75;CL:0000183!7.02e-11!59;CL:0000680!7.55e-11!57;CL:0000056!7.55e-11!57;CL:0000355!7.55e-11!57;CL:0000187!3.28e-10!54;CL:0002334!2.98e-08!12;CL:0000048!3.25e-08!430;CL:0000393!7.76e-08!60;CL:0000211!7.76e-08!60;CL:0000192!8.37e-08!42;CL:0000514!8.37e-08!42;CL:0002494!1.07e-07!16;CL:0000723!1.18e-07!436;CL:0000144!1.29e-07!625;CL:0002371!1.41e-07!591;CL:0000034!2.35e-07!444;CL:0000222!2.63e-07!119 | |ontology_enrichment_celltype=CL:0000055!1.79e-29!180;CL:0000057!2.67e-19!75;CL:0000183!7.02e-11!59;CL:0000680!7.55e-11!57;CL:0000056!7.55e-11!57;CL:0000355!7.55e-11!57;CL:0000187!3.28e-10!54;CL:0002334!2.98e-08!12;CL:0000048!3.25e-08!430;CL:0000393!7.76e-08!60;CL:0000211!7.76e-08!60;CL:0000192!8.37e-08!42;CL:0000514!8.37e-08!42;CL:0002494!1.07e-07!16;CL:0000723!1.18e-07!436;CL:0000144!1.29e-07!625;CL:0002371!1.41e-07!591;CL:0000034!2.35e-07!444;CL:0000222!2.63e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:0000349;7.51e-15;19!CL:0000134;2.34e-12;55!CL:0000048;7.09e-11;58!CL:0000723;3.20e-10;61!CL:0002334;4.34e-10;12!CL:0000057;2.01e-08;73!CL:0002569;2.06e-08;6!CL:0002320;1.12e-07;188!CL:0000034;1.47e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.56e-22,76;CL:0000349,2.84e-15,19;CL:0000048,2.98e-13,427;CL:0000723,1.18e-12,433;CL:0002320,2.07e-12,361;CL:0000134,4.38e-12,354;CL:0000034,6.92e-12,441;CL:0002334,5.47e-10,12;CL:0000219,2.63e-09,386;CL:0002569,2.44e-08,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!8.02e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.39e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.59e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!1.47e-11!83;UBERON:0002329!1.47e-11!83;UBERON:0003077!1.47e-11!83;UBERON:0003059!1.47e-11!83;UBERON:0007282!1.47e-11!83;UBERON:0009618!1.47e-11!83;UBERON:0007285!1.47e-11!83;UBERON:0002385!3.90e-11!63;UBERON:0001015!3.90e-11!63;UBERON:0000383!3.90e-11!63;UBERON:0001134!5.18e-11!61;UBERON:0002036!5.18e-11!61;UBERON:0003082!5.18e-11!61;UBERON:0004290!7.53e-11!70;UBERON:0000486!4.69e-09!82;UBERON:0004872!1.29e-08!84;UBERON:0000478!2.90e-08!24;UBERON:0005256!7.47e-08!143 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;1.26e-12;24!UBERON:0003104;8.73e-10;7!UBERON:0009142;8.73e-10;7!UBERON:0004457;4.32e-09;9!UBERON:0000042;4.32e-09;9!UBERON:0003688;5.99e-09;6!UBERON:0002358;5.99e-09;6!UBERON:0003684;5.99e-09;6!UBERON:0001178;5.99e-09;6!UBERON:0003422;2.06e-08;6!UBERON:0002384;2.37e-08;198!UBERON:0005631;2.50e-07;10!UBERON:0000158;2.50e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,5.20e-13,371;UBERON:0000478,5.72e-13,24;UBERON:0003688,7.24e-09,6;UBERON:0002358,7.24e-09,6;UBERON:0003684,7.24e-09,6;UBERON:0001178,7.24e-09,6;UBERON:0003422,2.44e-08,6;UBERON:0005631,4.17e-08,14;UBERON:0000158,4.17e-08,14;UBERON:0004923,1.39e-07,66 | |||
|phase1_expression=1.2717486548939,4.92431204949261,2.39622486963151,5.00366491765652,3.12872766099101,8.72338524100369,0,0.631719873426831,0.783556884599516,0.245733936501509,0,1.96597234917155,4.22027165165526,0.123766352960047,0.331397375727916,0.672325146451775,0.602694528023977,1.46062018077475,0,0.246242116153576,0.408001382488506,0.626909442956176,0,0.410623275218653,0.125542639594803,0,0,0,0,0,0.464448369948228,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221533894583621,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0.670700859703636,1.02290049474824,1.0843174571537,0,3.18662341713812,1.5905718941022,8.27279279514481,0,1.55210578223795,1.40535657109002,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,1.67799774483962,0.275118041940067,0.208994966536811,0,0,0.33472061276467,0,0,0.24406205754817,0,2.43042584364528,0.0892997282840798,0,0,0,0,0.183201743930407,0,0,0,7.9515512271251,1.2663051166458,0.794455084879313,14.6286676581895,2.12801029319014,2.80338800071154,1.06748995729705,6.166688710429,0.311211035399766,1.21239604862719,1.63461903113459,1.96764655938411,4.60940739583999,0,0,0,0.149448680551801,0,0.161872944368132,0,0,0,0.103325781175765,1.18800285728205,1.7308685049499,1.82032272387605,2.15585442544872,0.168336113954066,0.125118519871964,0,1.75591048352335,1.83892677479412,1.20190447125277,0.340296549480063,6.27863724911017,1.06778694409284,1.48352330811693,3.30100205692843,0.824420233907511,5.92573242104947,0.930584281657949,2.19409231913646,2.53336213419116,4.54380793639406,1.01254888506529,2.58633690910099,9.58525899794859,0.806016785821122,0.67824236924195,0,0,0,0,0,0.464775771478074,0.10366105501537,0.252320850875628,0,3.12899064659632,3.21620469096443,1.38134921352481,0.928735856063958,1.44375896333917,0.828147600278907,0.505754070234305,0.241011029883482,0.330881918197182,0.653638332277218,0.949082476444386,0.539325232640658,0,0,0,1.40241773803446,2.057870056657,7.3504355692771,0,0,0,0,0,0.514703430895577,0.109750285408626,0,0,0,0.325808305310325,0,0,0,1.52631302506568,0.144366447761074,0,0.380508304469197,0,0,0,0,0,0,0.503946384596579,0,0,0,0,0,0,0,0.144119953416961,0,0,0,0,0,0.102827492703324,0,0,0.336393253036082,0.43596006883328,0.1466765716419,2.06834745212444,0,1.690605505112,0.797814349754612,0,0.257207374262142,0,0,1.42977993658148,11.3950537132203,4.11620168390384,0,1.42156779497018,1.58390374586686,0,0,0.599837947092342,0,0,0,2.15662369942424,2.29723871668228,0,0.723906533337896,0.821905290201534,0.179060963239896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.271265023699736,4.78332981520856,10.5273103390325,3.94256037584837,2.10854546986884,0.902838299183157,4.5481500811197,2.0694614258501,1.99267679560631,1.47495334833363,0.434418072340414,2.34961388955289,1.71571711905428,0,0,0,0,1.66435439510497,9.07170879989041,2.23297027036899,4.60385919864187,11.507063871756,2.05022638809122,3.58195074346692,4.98647155545183,1.48418066444991,0.771048469013278,3.9063579568888,0.657017248110473,1.55776328755086,1.04589340613963,0,0.200506470303285,0,0.803701137152247,0.364182336013434,0.917870904715969,0,0.0770153371044148,0,0,0.105551628892876,0,0.170093705276516,0.215915916102139,0,0.270946437543853,0,0,0,0.223874754722178,0,0,0,0,0,0.309123034943167,1.09883357782012,0.41254749960294,0,0,3.21367859688319,0.580024309752732,0.308097234229289,0.614014698904518,0.413509717453592,0.537101224341368,0.725083469571143,0.170453254832202,1.33548053470106,0.165284915360978,0,0.127612712494584,0.30347334256665,0.464845549297286,11.0184321390724,0,0.924100740528266,0.532306030317022,0,0,0.572499546967965,0.372158369359667,0,2.09693213316207,0.255897791311334,1.28381696410176,0.636406495851874,0.78494864019923,1.2591072030832,2.19629623788844,1.29593642580255,0.606547444719948,1.58510321173008,0.421258456238981,0.48763373908959,0.731140468893853,2.11300293513511,0.545999645631943,4.3835683905651,0,0,1.32687795048244,0.438450885253763,0.578775534266688,1.31178950409327,0.202910376962704,0.30982349809975,0.845086807596724,0.430234056612155,1.27723753317057,1.426684205925,0,1.26664581178598,1.97576935775941,0,0.699869440489966,0,0,0,0.0941438007767792,0,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0.284136146806413,1.43246690842614,2.96964680832639,2.45728561679386,0,0,0.111308705022906,0,0,0.19924798825107,0.828851746593443,0,0.715880777515084,0,2.17727711363265,0,0,0,0.394573622547734,0,0,0,0,0,0,0.0874599999961957,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.615602068030377,0.455768223388005,0,0.0897576444097721,0,1.5950057986596,1.64875668123352,6.39641731222362,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.611030144933625,0,0,0,0,3.21031058919516,0,0,0,0,0,2.41981432097328,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0.171986032471617,0.387025325156341,0.219267951258557,0.164230914106418,0,0,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| ||
|short_description=p@chr9:137593007..137593032,+ | |short_description=p@chr9:137593007..137593032,+ | ||
}} | }} |
Latest revision as of 00:06, 1 August 2015
Short description: | p@chr9:137593007..137593032, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr9:137593007..137593032, + |
Coexpression cluster: | C396_Mesenchymal_Chondrocyte_Smooth_Preadipocyte_Placental_Fibroblast_Hepatic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.56e-22 | 76 |
extraembryonic cell | 2.84e-15 | 19 |
multi fate stem cell | 2.98e-13 | 427 |
somatic stem cell | 1.18e-12 | 433 |
connective tissue cell | 2.07e-12 | 361 |
mesenchymal cell | 4.38e-12 | 354 |
stem cell | 6.92e-12 | 441 |
preadipocyte | 5.47e-10 | 12 |
motile cell | 2.63e-09 | 386 |
mesenchymal stem cell of umbilical cord | 2.44e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 5.20e-13 | 371 |
extraembryonic structure | 5.72e-13 | 24 |
omentum | 7.24e-09 | 6 |
peritoneum | 7.24e-09 | 6 |
abdominal cavity | 7.24e-09 | 6 |
visceral peritoneum | 7.24e-09 | 6 |
mesenchyme of umbilical cord | 2.44e-08 | 6 |
extraembryonic membrane | 4.17e-08 | 14 |
membranous layer | 4.17e-08 | 14 |
organ component layer | 1.39e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.59e-07 | 14 |