FFCP PHASE1:Hg19::chr9:114490545..114490560,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr9:114490545..114490560,- | |||
|coexpression_cluster_id=C1938 | |coexpression_cluster_id=C1938 | ||
|description=CAGE_peak_at_chr9:114490545..114490560,- | |description=CAGE_peak_at_chr9:114490545..114490560,- | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000066!2.13e-14!254;CL:0002150!1.55e-13!3;CL:0000861!1.55e-13!3;CL:0002076!1.68e-12!43;CL:0000223!8.17e-12!59;CL:0000076!6.87e-10!62 | |ontology_enrichment_celltype=CL:0000066!2.13e-14!254;CL:0002150!1.55e-13!3;CL:0000861!1.55e-13!3;CL:0002076!1.68e-12!43;CL:0000223!8.17e-12!59;CL:0000076!6.87e-10!62 | ||
|ontology_enrichment_celltype_v019=CL:0002535;2.23e-11;2!CL:0000082;5.43e-10;19!CL:0000322;7.50e-08;3 | |ontology_enrichment_celltype_v019=CL:0002535;2.23e-11;2!CL:0000082;5.43e-10;19!CL:0000322;7.50e-08;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002535,2.23e-11,2;CL:0000076,2.83e-11,63;CL:0000082,5.18e-10,19;CL:0000322,7.76e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0008814;3.89e-11;2!UBERON:0010056;3.89e-11;2!UBERON:0009847;4.84e-08;3!UBERON:0003353;4.84e-08;3!UBERON:0008947;9.59e-07;29 | |ontology_enrichment_development_v019=UBERON:0008814;3.89e-11;2!UBERON:0010056;3.89e-11;2!UBERON:0009847;4.84e-08;3!UBERON:0003353;4.84e-08;3!UBERON:0008947;9.59e-07;29 | ||
|ontology_enrichment_disease=DOID:305!2.80e-23!106;DOID:0050687!1.10e-18!143;DOID:1749!7.89e-16!14;DOID:162!5.92e-15!235;DOID:14566!1.73e-14!239;DOID:3908!4.24e-09!5;DOID:4556!3.27e-07!3 | |ontology_enrichment_disease=DOID:305!2.80e-23!106;DOID:0050687!1.10e-18!143;DOID:1749!7.89e-16!14;DOID:162!5.92e-15!235;DOID:14566!1.73e-14!239;DOID:3908!4.24e-09!5;DOID:4556!3.27e-07!3 | ||
|ontology_enrichment_disease_v019=DOID:1749;1.87e-35;14!DOID:3908;8.82e-17;5!DOID:1324;1.75e-12;15!DOID:0050615;9.57e-12;16!DOID:4074;3.02e-11;2!DOID:4905;3.02e-11;2!DOID:3498;3.02e-11;2!DOID:3910;3.89e-11;2!DOID:3905;9.24e-10;9!DOID:4556;5.73e-08;3 | |ontology_enrichment_disease_v019=DOID:1749;1.87e-35;14!DOID:3908;8.82e-17;5!DOID:1324;1.75e-12;15!DOID:0050615;9.57e-12;16!DOID:4074;3.02e-11;2!DOID:4905;3.02e-11;2!DOID:3498;3.02e-11;2!DOID:3910;3.89e-11;2!DOID:3905;9.24e-10;9!DOID:4556;5.73e-08;3 | ||
|ontology_enrichment_disease_v019_2=DOID:1749,1.94e-35,14;DOID:3908,8.82e-17,5;DOID:305,9.64e-15,106;DOID:1324,1.65e-12,15;DOID:0050615,9.05e-12,16;DOID:4074,3.02e-11,2;DOID:4905,3.02e-11,2;DOID:3498,3.02e-11,2;DOID:3910,4.09e-11,2;DOID:0050687,8.16e-11,143;DOID:3905,9.24e-10,9;DOID:4556,5.54e-08,3;DOID:162,6.25e-08,235;DOID:14566,9.40e-08,239 | |||
|ontology_enrichment_uberon=UBERON:0003729!9.76e-09!5;UBERON:0004119!6.15e-07!169;UBERON:0000925!6.15e-07!169;UBERON:0006595!6.15e-07!169 | |ontology_enrichment_uberon=UBERON:0003729!9.76e-09!5;UBERON:0004119!6.15e-07!169;UBERON:0000925!6.15e-07!169;UBERON:0006595!6.15e-07!169 | ||
|ontology_enrichment_uberon_v019=UBERON:0006955;2.23e-11;2!UBERON:0004801;2.23e-11;2!UBERON:0004903;3.89e-11;2!UBERON:0002173;3.89e-11;2!UBERON:0002186;3.89e-11;2!UBERON:0004802;5.43e-10;19!UBERON:0000115;5.43e-10;19!UBERON:0002048;1.03e-08;22!UBERON:0004807;1.03e-08;22!UBERON:0000117;1.03e-08;22!UBERON:0000171;1.03e-08;22!UBERON:0000170;1.03e-08;22!UBERON:0001723;7.50e-08;3!UBERON:0004821;7.50e-08;3!UBERON:0007499;7.50e-08;3!UBERON:0003215;7.50e-08;3!UBERON:0010368;7.50e-08;3!UBERON:0009911;7.50e-08;3!UBERON:0002299;7.50e-08;3!UBERON:0001033;7.50e-08;3!UBERON:0006524;7.50e-08;3!UBERON:0008874;7.50e-08;3!UBERON:0002169;7.50e-08;3!UBERON:0004894;7.50e-08;3 | |ontology_enrichment_uberon_v019=UBERON:0006955;2.23e-11;2!UBERON:0004801;2.23e-11;2!UBERON:0004903;3.89e-11;2!UBERON:0002173;3.89e-11;2!UBERON:0002186;3.89e-11;2!UBERON:0004802;5.43e-10;19!UBERON:0000115;5.43e-10;19!UBERON:0002048;1.03e-08;22!UBERON:0004807;1.03e-08;22!UBERON:0000117;1.03e-08;22!UBERON:0000171;1.03e-08;22!UBERON:0000170;1.03e-08;22!UBERON:0001723;7.50e-08;3!UBERON:0004821;7.50e-08;3!UBERON:0007499;7.50e-08;3!UBERON:0003215;7.50e-08;3!UBERON:0010368;7.50e-08;3!UBERON:0009911;7.50e-08;3!UBERON:0002299;7.50e-08;3!UBERON:0001033;7.50e-08;3!UBERON:0006524;7.50e-08;3!UBERON:0008874;7.50e-08;3!UBERON:0002169;7.50e-08;3!UBERON:0004894;7.50e-08;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0006955,2.23e-11,2;UBERON:0004801,2.23e-11,2;UBERON:0004903,4.09e-11,2;UBERON:0002173,4.09e-11,2;UBERON:0002186,4.09e-11,2;UBERON:0004802,5.18e-10,19;UBERON:0000115,5.18e-10,19;UBERON:0005153,5.94e-09,37;UBERON:0002048,9.94e-09,22;UBERON:0000117,9.94e-09,22;UBERON:0000171,9.94e-09,22;UBERON:0000170,9.94e-09,22;UBERON:0005597,9.94e-09,22;UBERON:0000118,9.94e-09,22;UBERON:0004821,7.76e-08,3;UBERON:0003215,7.76e-08,3;UBERON:0010368,7.76e-08,3;UBERON:0009911,7.76e-08,3;UBERON:0002299,7.76e-08,3;UBERON:0006524,7.76e-08,3;UBERON:0008874,7.76e-08,3;UBERON:0002169,7.76e-08,3;UBERON:0004894,7.76e-08,3;UBERON:0001723,8.29e-08,3;UBERON:0001033,8.29e-08,3;UBERON:0010056,8.29e-08,3;UBERON:0005157,4.13e-07,47;UBERON:0000072,4.71e-07,47;UBERON:0004807,5.58e-07,28 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0.0920809889358963,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.495854746082934,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.60333172370983,0,0,0,0,0.102268682502155,0,0,0.179736702294654,0,0,0,0,0,0,0,0,0,0,0,0,1.5255219017566,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,2.15231080825299,0,0,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0,0.195984794828755,7.57415097249502,0,0,0.19351266257817,0.0730893170861856,0.164230914106418,0,0,0,0,0,0,0,0.721429382263803,0,0.19980960958213,0,0,0,0.288109595976299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211200673038813,0,5.75745591958336,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,35.7471104351302,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385239660814607,0,0.260994291965212,0,0.231522474323834,0.244736704506468,0,0,0,0,1.92914038270915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294443155503077,0,0,1.5018336599544,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0,0,0,0,0,0,11.7011902475129,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60698544745092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143444410785353,0,0,0.640364075266293,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0.0920809889358963,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.495854746082934,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.60333172370983,0,0,0,0,0.102268682502155,0,0,0.179736702294654,0,0,0,0,0,0,0,0,0,0,0,0,1.5255219017566,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,2.15231080825299,0,0,0,0,0,0,0,0,0,0,0,0,0.138674673013139,0,0.195984794828755,7.57415097249502,0,0,0.19351266257817,0.0730893170861856,0.164230914106418,0,0,0,0,0,0,0,0.721429382263803,0,0.19980960958213,0,0,0,0.288109595976299,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211200673038813,0,5.75745591958336,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,35.7471104351302,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.385239660814607,0,0.260994291965212,0,0.231522474323834,0.244736704506468,0,0,0,0,1.92914038270915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294443155503077,0,0,1.5018336599544,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0.383287282918786,0,0,0,0,0,0,0,0,0,11.7011902475129,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60698544745092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143444410785353,0,0,0.640364075266293,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr9:114490545..114490560,- | |short_description=p@chr9:114490545..114490560,- | ||
}} | }} |
Latest revision as of 21:48, 31 July 2015
Short description: | p@chr9:114490545..114490560, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr9:114490545..114490560, - |
Coexpression cluster: | C1938_malignant_epidermoid_prostate_oral_large_anaplastic_ductal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of cervix | 2.23e-11 | 2 |
squamous epithelial cell | 2.83e-11 | 63 |
epithelial cell of lung | 5.18e-10 | 19 |
pneumocyte | 7.76e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
uterine epithelium | 2.23e-11 | 2 |
cervix epithelium | 2.23e-11 | 2 |
bronchoalveolar duct junction | 4.09e-11 | 2 |
alveolar duct | 4.09e-11 | 2 |
bronchiole | 4.09e-11 | 2 |
respiratory tract epithelium | 5.18e-10 | 19 |
lung epithelium | 5.18e-10 | 19 |
epithelial bud | 5.94e-09 | 37 |
lung | 9.94e-09 | 22 |
respiratory tube | 9.94e-09 | 22 |
respiration organ | 9.94e-09 | 22 |
pair of lungs | 9.94e-09 | 22 |
lung primordium | 9.94e-09 | 22 |
lung bud | 9.94e-09 | 22 |
pulmonary alveolus epithelium | 7.76e-08 | 3 |
alveolus | 7.76e-08 | 3 |
pulmonary lobule | 7.76e-08 | 3 |
lobule | 7.76e-08 | 3 |
alveolus of lung | 7.76e-08 | 3 |
alveolar system | 7.76e-08 | 3 |
pulmonary acinus | 7.76e-08 | 3 |
alveolar sac | 7.76e-08 | 3 |
alveolar wall | 7.76e-08 | 3 |
tongue | 8.29e-08 | 3 |
gustatory system | 8.29e-08 | 3 |
future tongue | 8.29e-08 | 3 |
epithelial fold | 4.13e-07 | 47 |
segment of respiratory tract | 4.71e-07 | 47 |
respiratory system epithelium | 5.58e-07 | 28 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.94e-35 | 14 |
non-small cell lung carcinoma | 8.82e-17 | 5 |
carcinoma | 9.64e-15 | 106 |
lung cancer | 1.65e-12 | 15 |
respiratory system cancer | 9.05e-12 | 16 |
pancreas adenocarcinoma | 3.02e-11 | 2 |
pancreatic carcinoma | 3.02e-11 | 2 |
pancreatic ductal adenocarcinoma | 3.02e-11 | 2 |
lung adenocarcinoma | 4.09e-11 | 2 |
cell type cancer | 8.16e-11 | 143 |
lung carcinoma | 9.24e-10 | 9 |
lung large cell carcinoma | 5.54e-08 | 3 |
cancer | 6.25e-08 | 235 |
disease of cellular proliferation | 9.40e-08 | 239 |