FFCP PHASE1:Hg19::chr5:58233159..58233173,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr5:58233159..58233173,+ | |||
|coexpression_cluster_id=C15 | |coexpression_cluster_id=C15 | ||
|description=CAGE_peak_at_chr5:58233159..58233173,+ | |description=CAGE_peak_at_chr5:58233159..58233173,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0002322!1.25e-14!5;CL:0000039!2.68e-10!7;CL:0000586!2.68e-10!7;CL:0002150!1.29e-07!3;CL:0000861!1.29e-07!3 | |ontology_enrichment_celltype=CL:0002322!1.25e-14!5;CL:0000039!2.68e-10!7;CL:0000586!2.68e-10!7;CL:0002150!1.29e-07!3;CL:0000861!1.29e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002322;1.11e-29;5!CL:0000039;3.59e-21;7!CL:0000586;3.59e-21;7!CL:0002321;8.95e-10;15!CL:0002127;4.74e-07;1!CL:0000911;4.74e-07;1!CL:0000814;4.74e-07;1 | |ontology_enrichment_celltype_v019=CL:0002322;1.11e-29;5!CL:0000039;3.59e-21;7!CL:0000586;3.59e-21;7!CL:0002321;8.95e-10;15!CL:0002127;4.74e-07;1!CL:0000911;4.74e-07;1!CL:0000814;4.74e-07;1 | ||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.07e-29,5;CL:0000039,3.83e-21,7;CL:0000586,3.83e-21,7;CL:0002127,4.34e-07,1;CL:0000914,4.34e-07,1;CL:0000911,4.34e-07,1;CL:0000814,4.34e-07,1;CL:0002042,4.34e-07,1;CL:0002039,4.34e-07,1;CL:0002040,4.34e-07,1;CL:0002041,4.34e-07,1 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1036;1.29e-11;8!DOID:3095;2.51e-09;22!DOID:2994;2.51e-09;22!DOID:2355;1.40e-07;1!DOID:5409;3.68e-07;4!DOID:3119;4.17e-07;14!DOID:0050619;6.38e-07;1!DOID:1357;6.38e-07;1 | |ontology_enrichment_disease_v019=DOID:1036;1.29e-11;8!DOID:3095;2.51e-09;22!DOID:2994;2.51e-09;22!DOID:2355;1.40e-07;1!DOID:5409;3.68e-07;4!DOID:3119;4.17e-07;14!DOID:0050619;6.38e-07;1!DOID:1357;6.38e-07;1 | ||
|ontology_enrichment_disease_v019_2=DOID:1036,1.35e-11,8;DOID:3095,2.59e-09,22;DOID:2994,2.59e-09,22;DOID:162,1.36e-08,235;DOID:14566,2.57e-08,239;DOID:2355,1.36e-07,1;DOID:5409,3.63e-07,4;DOID:3119,3.97e-07,14;DOID:0050619,5.50e-07,1;DOID:1357,5.50e-07,1 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0001282;3.21e-07;1!UBERON:0009842;3.21e-07;1!UBERON:0003704;3.21e-07;1!UBERON:0001171;3.21e-07;1!UBERON:0001172;3.21e-07;1!UBERON:0000473;3.27e-07;8!UBERON:0002135;6.38e-07;1!UBERON:0001764;6.38e-07;1!UBERON:0001825;6.38e-07;1 | |ontology_enrichment_uberon_v019=UBERON:0001282;3.21e-07;1!UBERON:0009842;3.21e-07;1!UBERON:0003704;3.21e-07;1!UBERON:0001171;3.21e-07;1!UBERON:0001172;3.21e-07;1!UBERON:0000473;3.27e-07;8!UBERON:0002135;6.38e-07;1!UBERON:0001764;6.38e-07;1!UBERON:0001825;6.38e-07;1 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001282,3.02e-07,1;UBERON:0009842,3.02e-07,1;UBERON:0003704,3.02e-07,1;UBERON:0001171,3.02e-07,1;UBERON:0001172,3.02e-07,1;UBERON:0000473,3.45e-07,8;UBERON:0001764,5.50e-07,1;UBERON:0001825,5.50e-07,1;UBERON:0002135,7.40e-07,1 | |||
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| ||
|short_description=p@chr5:58233159..58233173,+ | |short_description=p@chr5:58233159..58233173,+ | ||
}} | }} |
Latest revision as of 15:28, 30 July 2015
Short description: | p@chr5:58233159..58233173, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:58233159..58233173, + |
Coexpression cluster: | C15_anaplastic_small_skeletal_neuroblastoma_parietal_temporal_tongue |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.07e-29 | 5 |
germ line cell | 3.83e-21 | 7 |
germ cell | 3.83e-21 | 7 |
innate effector T cell | 4.34e-07 | 1 |
immature NK T cell | 4.34e-07 | 1 |
effector T cell | 4.34e-07 | 1 |
mature NK T cell | 4.34e-07 | 1 |
immature NK T cell stage IV | 4.34e-07 | 1 |
immature NK T cell stage I | 4.34e-07 | 1 |
immature NK T cell stage II | 4.34e-07 | 1 |
immature NK T cell stage III | 4.34e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
intralobular bile duct | 3.02e-07 | 1 |
acinus | 3.02e-07 | 1 |
intrahepatic bile duct | 3.02e-07 | 1 |
portal lobule | 3.02e-07 | 1 |
hepatic acinus | 3.02e-07 | 1 |
testis | 3.45e-07 | 8 |
maxillary sinus | 5.50e-07 | 1 |
paranasal sinus | 5.50e-07 | 1 |
mitral valve | 7.40e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
chronic leukemia | 1.35e-11 | 8 |
germ cell and embryonal cancer | 2.59e-09 | 22 |
germ cell cancer | 2.59e-09 | 22 |
cancer | 1.36e-08 | 235 |
disease of cellular proliferation | 2.57e-08 | 239 |
anemia | 1.36e-07 | 1 |
lung small cell carcinoma | 3.63e-07 | 4 |
gastrointestinal system cancer | 3.97e-07 | 14 |
paranasal sinus cancer | 5.50e-07 | 1 |
maxillary sinus cancer | 5.50e-07 | 1 |