FFCP PHASE1:Hg19::chr5:133482338..133482353,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr5:133482338..133482353,+ | |||
|coexpression_cluster_id=C1525 | |||
|description=CAGE_peak_at_chr5:133482338..133482353,+ | |description=CAGE_peak_at_chr5:133482338..133482353,+ | ||
|id=chr5:133482338..133482353,+ | |id=chr5:133482338..133482353,+ | ||
|ontology_enrichment_celltype=CL:0000838!7.08e-20!52;CL:0000542!2.27e-19!53;CL:0000051!2.27e-19!53;CL:0000084!3.89e-16!25;CL:0000827!3.89e-16!25;CL:0000791!1.15e-11!18;CL:0000789!1.15e-11!18;CL:0002420!1.15e-11!18;CL:0002419!1.15e-11!18;CL:0000790!1.15e-11!18;CL:0002087!1.16e-08!119;CL:0000842!5.71e-08!3;CL:0000623!7.38e-08!3;CL:0000825!7.38e-08!3;CL:0000738!1.03e-07!140;CL:0002582!2.58e-07!3;CL:0000625!2.97e-07!11;CL:0000624!4.89e-07!6 | |ontology_enrichment_celltype=CL:0000838!7.08e-20!52;CL:0000542!2.27e-19!53;CL:0000051!2.27e-19!53;CL:0000084!3.89e-16!25;CL:0000827!3.89e-16!25;CL:0000791!1.15e-11!18;CL:0000789!1.15e-11!18;CL:0002420!1.15e-11!18;CL:0002419!1.15e-11!18;CL:0000790!1.15e-11!18;CL:0002087!1.16e-08!119;CL:0000842!5.71e-08!3;CL:0000623!7.38e-08!3;CL:0000825!7.38e-08!3;CL:0000738!1.03e-07!140;CL:0002582!2.58e-07!3;CL:0000625!2.97e-07!11;CL:0000624!4.89e-07!6 | ||
|ontology_enrichment_celltype_v019=CL:0000624;4.60e-11;6!CL:0000084;4.63e-10;25!CL:0000791;3.52e-08;18!CL:0000789;3.52e-08;18!CL:0002419;3.52e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000624,3.75e-11,6;CL:0000084,4.42e-10,25;CL:0000827,4.42e-10,25;CL:0000791,3.23e-08,18;CL:0000789,3.23e-08,18;CL:0002420,3.23e-08,18;CL:0002419,3.23e-08,18;CL:0000790,3.23e-08,18 | |||
|ontology_enrichment_development_v019=CL:0000790;3.52e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!3.09e-12!15;UBERON:0000179!3.09e-12!15;UBERON:0000463!3.09e-12!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;4.04e-31;2!UBERON:0005058;4.04e-31;2!UBERON:0009113;4.04e-31;2!UBERON:0000178;8.23e-17;15!UBERON:0000179;8.23e-17;15!UBERON:0000463;8.23e-17;15!UBERON:0002390;1.92e-14;32!UBERON:0004177;4.38e-13;5!UBERON:0005057;4.38e-13;5!UBERON:0002193;4.24e-10;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,8.75e-17,15;UBERON:0000179,8.75e-17,15;UBERON:0000463,8.75e-17,15;UBERON:0002370,4.18e-16,4;UBERON:0005058,4.18e-16,4;UBERON:0009113,4.18e-16,4;UBERON:0003295,4.18e-16,4;UBERON:0005562,4.18e-16,4;UBERON:0003351,4.60e-11,6;UBERON:0004177,1.29e-09,7;UBERON:0005057,1.29e-09,7;UBERON:0000974,5.43e-07,10;UBERON:0003408,5.43e-07,10;UBERON:0001042,5.43e-07,10;UBERON:0009145,5.43e-07,10 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0.246301768349837,0.157421562627358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0.382273228125229,0,0,0,1.180258620683,1.96505381374582,0.822405995998037,0.167186495390678,0.32592226663359,0.473447805734733,1.94826728407911,0,0,0.221533894583621,0,0,0,0.164437904603676,0,0,0.444859689486181,0.267540828089713,1.04535523804977,0,0,0.34362744548263,0.506039384039006,0.318565414324097,0,0,0.301150238155546,0.127986611154418,0,0,0,0.604820229674197,0.802320587350522,1.15859523106239,0,0,0,0,0,0.144846518960824,0,0,0.0945348171640679,0,0,0,0,0,0,0,0.132957960518865,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0,0,0,0,0,0,0,0,0,0.298897361103602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.20731549707325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0.646882724578552,0.256686072559497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.862856803274467,0.640365346820666,0,0,0,0,0,0,0,0,0,0,0.308419387605311,0.177561725313127,0.246381468041427,0.519254429183621,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183138929636687,0.165018999841176,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01489521846434,0,3.41788312304498,0.476463550915578,0,0.648473311192717,0,2.37937552888281,0,0,0,0,0,0.853702120180969,0.637705090915289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.568272293612826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04386596391473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.135904206073614,0,0.101998217636322,0,0,0,0,0,0.525774708558629,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0.26961417541674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542999601753713,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,0,0,0,0.992332043623902,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0.468334905806882,0,0.447764408660622,0,0,0,0,0,0,0.151230923763239,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343395705182793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0.163771917510097,0,0.0675375846183947,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0.0679697329768317,0.0657727735628491,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121917924982269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128915775947154,0,0,0,0,0,0,0,0,0,0,0,0.371995018166751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23806443146374,1.61472274590015,1.11734485732544,0,0.0636471582781649,0,0.217716747896961,0,0,0,0,0,0,0,0,0,0,0.406896178315738,0,0,0.320568492303233 | ||
|short_description=p@chr5:133482338..133482353,+ | |short_description=p@chr5:133482338..133482353,+ | ||
}} | }} |
Latest revision as of 09:46, 30 July 2015
Short description: | p@chr5:133482338..133482353, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:133482338..133482353, + |
Coexpression cluster: | C1525_Hodgkin_chronic_CD4_thymus_Whole_blood_acute |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta T cell | 3.75e-11 | 6 |
T cell | 4.42e-10 | 25 |
pro-T cell | 4.42e-10 | 25 |
mature alpha-beta T cell | 3.23e-08 | 18 |
alpha-beta T cell | 3.23e-08 | 18 |
immature T cell | 3.23e-08 | 18 |
mature T cell | 3.23e-08 | 18 |
immature alpha-beta T cell | 3.23e-08 | 18 |
Ontology term | p-value | n |
---|---|---|
blood | 8.75e-17 | 15 |
haemolymphatic fluid | 8.75e-17 | 15 |
organism substance | 8.75e-17 | 15 |
thymus | 4.18e-16 | 4 |
hemolymphoid system gland | 4.18e-16 | 4 |
thymic region | 4.18e-16 | 4 |
pharyngeal gland | 4.18e-16 | 4 |
thymus primordium | 4.18e-16 | 4 |
pharyngeal epithelium | 4.60e-11 | 6 |
hemopoietic organ | 1.29e-09 | 7 |
immune organ | 1.29e-09 | 7 |
neck | 5.43e-07 | 10 |
gland of gut | 5.43e-07 | 10 |
chordate pharynx | 5.43e-07 | 10 |
pharyngeal region of foregut | 5.43e-07 | 10 |