FFCP PHASE1:Hg19::chr4:90856403..90856425,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:90856403..90856425,+ | |||
|description=CAGE_peak_at_chr4:90856403..90856425,+ | |description=CAGE_peak_at_chr4:90856403..90856425,+ | ||
|id=chr4:90856403..90856425,+ | |id=chr4:90856403..90856425,+ | ||
|ontology_enrichment_celltype=CL:0002139!6.28e-50!24;CL:0000115!7.43e-37!35;CL:0000071!2.07e-29!18;CL:0002546!2.07e-29!18;CL:0002078!2.60e-28!44;CL:0005020!4.55e-24!6;CL:0002138!4.55e-24!6;CL:0005022!4.55e-24!6;CL:1000413!7.12e-21!9;CL:0000213!9.52e-21!57;CL:0000215!9.52e-21!57;CL:0002544!1.14e-16!6;CL:0002618!7.65e-13!3;CL:0002543!8.56e-11!6;CL:0000222!1.58e-08!119 | |ontology_enrichment_celltype=CL:0002139!6.28e-50!24;CL:0000115!7.43e-37!35;CL:0000071!2.07e-29!18;CL:0002546!2.07e-29!18;CL:0002078!2.60e-28!44;CL:0005020!4.55e-24!6;CL:0002138!4.55e-24!6;CL:0005022!4.55e-24!6;CL:1000413!7.12e-21!9;CL:0000213!9.52e-21!57;CL:0000215!9.52e-21!57;CL:0002544!1.14e-16!6;CL:0002618!7.65e-13!3;CL:0002543!8.56e-11!6;CL:0000222!1.58e-08!119 | ||
|ontology_enrichment_celltype_v019=CL:0002139;1.24e-29;24!CL:0000115;3.62e-21;36!CL:0000071;5.79e-18;18!CL:0002078;4.60e-16;45!CL:0002138;2.49e-14;6!CL:0002544;3.47e-14;6!CL:0000213;3.71e-12;58!CL:0000215;3.71e-12;58!CL:0002545;3.02e-11;2!CL:1000413;8.83e-10;9!CL:0002144;6.34e-08;3!CL:0002618;6.34e-08;3 | |ontology_enrichment_celltype_v019=CL:0002139;1.24e-29;24!CL:0000115;3.62e-21;36!CL:0000071;5.79e-18;18!CL:0002078;4.60e-16;45!CL:0002138;2.49e-14;6!CL:0002544;3.47e-14;6!CL:0000213;3.71e-12;58!CL:0000215;3.71e-12;58!CL:0002545;3.02e-11;2!CL:1000413;8.83e-10;9!CL:0002144;6.34e-08;3!CL:0002618;6.34e-08;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0002139,1.02e-29,24;CL:0000115,8.52e-27,36;CL:0002078,2.02e-21,45;CL:0000071,4.07e-18,18;CL:0002546,4.07e-18,18;CL:0000213,1.37e-16,58;CL:0000215,1.37e-16,58;CL:0002544,3.04e-14,6;CL:0005020,3.25e-14,6;CL:0002138,3.25e-14,6;CL:0005022,3.25e-14,6;CL:0002545,2.23e-11,2;CL:1000413,8.09e-10,9;CL:0002618,4.84e-08,3;CL:0002144,5.54e-08,3;CL:0000222,8.15e-08,121 | |||
|ontology_enrichment_development_v019=UBERON:0005425;4.22e-21;1!CL:0002546;5.79e-18;18!CL:0005022;2.49e-14;6!UBERON:0003056;6.34e-08;3 | |ontology_enrichment_development_v019=UBERON:0005425;4.22e-21;1!CL:0002546;5.79e-18;18!CL:0005022;2.49e-14;6!UBERON:0003056;6.34e-08;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!2.07e-29!18;UBERON:0004638!2.07e-29!18;UBERON:0004852!2.07e-29!18;UBERON:0000487!1.46e-23!22;UBERON:0003915!7.12e-21!9;UBERON:0004700!7.12e-21!9;UBERON:0001917!7.12e-21!9;UBERON:0006914!2.08e-20!25;UBERON:0002465!3.65e-19!10;UBERON:0001473!6.97e-18!8;UBERON:0004536!6.97e-18!8;UBERON:0006558!6.97e-18!8;UBERON:0000055!2.96e-16!69;UBERON:0002049!1.32e-13!79;UBERON:0007798!1.32e-13!79;UBERON:0001638!7.36e-11!9;UBERON:0003920!7.36e-11!9;UBERON:0004582!7.36e-11!9;UBERON:0004535!1.05e-10!110;UBERON:0001009!2.74e-10!113;UBERON:0001981!2.53e-08!60;UBERON:0007500!2.53e-08!60;UBERON:0004537!2.53e-08!60;UBERON:0006965!2.53e-08!60;UBERON:0004872!3.79e-08!84;UBERON:0002066!7.27e-08!5;UBERON:0004111!2.58e-07!241;UBERON:0000477!5.80e-07!286 | |ontology_enrichment_uberon=UBERON:0001986!2.07e-29!18;UBERON:0004638!2.07e-29!18;UBERON:0004852!2.07e-29!18;UBERON:0000487!1.46e-23!22;UBERON:0003915!7.12e-21!9;UBERON:0004700!7.12e-21!9;UBERON:0001917!7.12e-21!9;UBERON:0006914!2.08e-20!25;UBERON:0002465!3.65e-19!10;UBERON:0001473!6.97e-18!8;UBERON:0004536!6.97e-18!8;UBERON:0006558!6.97e-18!8;UBERON:0000055!2.96e-16!69;UBERON:0002049!1.32e-13!79;UBERON:0007798!1.32e-13!79;UBERON:0001638!7.36e-11!9;UBERON:0003920!7.36e-11!9;UBERON:0004582!7.36e-11!9;UBERON:0004535!1.05e-10!110;UBERON:0001009!2.74e-10!113;UBERON:0001981!2.53e-08!60;UBERON:0007500!2.53e-08!60;UBERON:0004537!2.53e-08!60;UBERON:0006965!2.53e-08!60;UBERON:0004872!3.79e-08!84;UBERON:0002066!7.27e-08!5;UBERON:0004111!2.58e-07!241;UBERON:0000477!5.80e-07!286 | ||
|ontology_enrichment_uberon_v019=UBERON:0000941;4.22e-21;1!UBERON:0001785;4.22e-21;1!UBERON:0002464;4.22e-21;1!UBERON:0004904;4.22e-21;1!UBERON:0001021;4.22e-21;1!UBERON:0004638;5.79e-18;18!UBERON:0001986;5.79e-18;18!UBERON:0004852;5.79e-18;18!UBERON:0000487;8.88e-15;22!UBERON:0006914;4.71e-13;25!UBERON:0003714;3.02e-11;2!UBERON:0005162;3.02e-11;2!UBERON:0000122;3.02e-11;2!UBERON:0005800;3.02e-11;2!UBERON:0001515;3.02e-11;2!UBERON:0001473;5.41e-11;8!UBERON:0004536;5.41e-11;8!UBERON:0006558;5.41e-11;8!UBERON:0003915;8.83e-10;9!UBERON:0004700;8.83e-10;9!UBERON:0001917;8.83e-10;9!UBERON:0000490;2.55e-09;33!UBERON:0002465;5.57e-09;10!UBERON:0010523;6.34e-08;3!UBERON:0001915;6.34e-08;3!UBERON:0002114;6.34e-08;2!UBERON:0001982;6.34e-08;3 | |ontology_enrichment_uberon_v019=UBERON:0000941;4.22e-21;1!UBERON:0001785;4.22e-21;1!UBERON:0002464;4.22e-21;1!UBERON:0004904;4.22e-21;1!UBERON:0001021;4.22e-21;1!UBERON:0004638;5.79e-18;18!UBERON:0001986;5.79e-18;18!UBERON:0004852;5.79e-18;18!UBERON:0000487;8.88e-15;22!UBERON:0006914;4.71e-13;25!UBERON:0003714;3.02e-11;2!UBERON:0005162;3.02e-11;2!UBERON:0000122;3.02e-11;2!UBERON:0005800;3.02e-11;2!UBERON:0001515;3.02e-11;2!UBERON:0001473;5.41e-11;8!UBERON:0004536;5.41e-11;8!UBERON:0006558;5.41e-11;8!UBERON:0003915;8.83e-10;9!UBERON:0004700;8.83e-10;9!UBERON:0001917;8.83e-10;9!UBERON:0000490;2.55e-09;33!UBERON:0002465;5.57e-09;10!UBERON:0010523;6.34e-08;3!UBERON:0001915;6.34e-08;3!UBERON:0002114;6.34e-08;2!UBERON:0001982;6.34e-08;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,3.45e-21,1;UBERON:0001785,3.45e-21,1;UBERON:0002464,3.45e-21,1;UBERON:0004904,3.45e-21,1;UBERON:0001021,3.45e-21,1;UBERON:0003902,3.45e-21,1;UBERON:0005425,3.45e-21,1;UBERON:0004638,4.07e-18,18;UBERON:0001986,4.07e-18,18;UBERON:0004852,4.07e-18,18;UBERON:0000487,6.67e-15,22;UBERON:0006914,3.66e-13,25;UBERON:0005800,2.23e-11,2;UBERON:0001515,2.23e-11,2;UBERON:0003714,2.73e-11,2;UBERON:0005162,2.73e-11,2;UBERON:0000122,2.73e-11,2;UBERON:0001473,6.61e-11,8;UBERON:0004536,6.61e-11,8;UBERON:0006558,6.61e-11,8;UBERON:0000055,1.75e-10,68;UBERON:0003915,8.09e-10,9;UBERON:0004700,8.09e-10,9;UBERON:0001917,8.09e-10,9;UBERON:0002049,3.99e-09,78;UBERON:0007798,3.99e-09,78;UBERON:0002465,6.54e-09,10;UBERON:0010523,5.54e-08,3;UBERON:0001915,5.54e-08,3;UBERON:0001982,5.54e-08,3;UBERON:0002114,7.76e-08,2 | |||
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|short_description=p@chr4:90856403..90856425,+ | |short_description=p@chr4:90856403..90856425,+ | ||
}} | }} |
Latest revision as of 08:03, 30 July 2015
Short description: | p@chr4:90856403..90856425, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:90856403..90856425, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 1.02e-29 | 24 |
endothelial cell | 8.52e-27 | 36 |
meso-epithelial cell | 2.02e-21 | 45 |
blood vessel endothelial cell | 4.07e-18 | 18 |
embryonic blood vessel endothelial progenitor cell | 4.07e-18 | 18 |
lining cell | 1.37e-16 | 58 |
barrier cell | 1.37e-16 | 58 |
aortic endothelial cell | 3.04e-14 | 6 |
lymphangioblast | 3.25e-14 | 6 |
endothelial cell of lymphatic vessel | 3.25e-14 | 6 |
vascular lymphangioblast | 3.25e-14 | 6 |
thoracic aorta endothelial cell | 2.23e-11 | 2 |
endothelial cell of artery | 8.09e-10 | 9 |
endothelial cell of umbilical vein | 4.84e-08 | 3 |
capillary endothelial cell | 5.54e-08 | 3 |
mesodermal cell | 8.15e-08 | 121 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 3.45e-21 | 1 |
cranial nerve | 3.45e-21 | 1 |
nerve trunk | 3.45e-21 | 1 |
nerve connecting eye with brain | 3.45e-21 | 1 |
nerve | 3.45e-21 | 1 |
retinal neural layer | 3.45e-21 | 1 |
presumptive neural retina | 3.45e-21 | 1 |
blood vessel endothelium | 4.07e-18 | 18 |
endothelium | 4.07e-18 | 18 |
cardiovascular system endothelium | 4.07e-18 | 18 |
simple squamous epithelium | 6.67e-15 | 22 |
squamous epithelium | 3.66e-13 | 25 |
segment of aorta | 2.23e-11 | 2 |
thoracic aorta | 2.23e-11 | 2 |
neural tissue | 2.73e-11 | 2 |
multi cell component structure | 2.73e-11 | 2 |
neuron projection bundle | 2.73e-11 | 2 |
lymphatic vessel | 6.61e-11 | 8 |
lymph vasculature | 6.61e-11 | 8 |
lymphatic part of lymphoid system | 6.61e-11 | 8 |
vessel | 1.75e-10 | 68 |
endothelial tube | 8.09e-10 | 9 |
arterial system endothelium | 8.09e-10 | 9 |
endothelium of artery | 8.09e-10 | 9 |
vasculature | 3.99e-09 | 78 |
vascular system | 3.99e-09 | 78 |
lymphoid system | 6.54e-09 | 10 |
microcirculatory vessel | 5.54e-08 | 3 |
endothelium of capillary | 5.54e-08 | 3 |
capillary | 5.54e-08 | 3 |
duodenum | 7.76e-08 | 2 |