FFCP PHASE1:Hg19::chr4:88727274..88727278,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:88727274..88727278,+ | |||
|coexpression_cluster_id=C77 | |coexpression_cluster_id=C77 | ||
|description=CAGE_peak_at_chr4:88727274..88727278,+ | |description=CAGE_peak_at_chr4:88727274..88727278,+ | ||
|id=chr4:88727274..88727278,+ | |id=chr4:88727274..88727278,+ | ||
|ontology_enrichment_celltype=CL:0000062!4.34e-21!11;CL:0000375!4.34e-21!11;CL:0000335!4.34e-21!11;CL:0000035!6.14e-12!20;CL:0002564!1.10e-09!3;CL:0000322!1.41e-09!3;CL:1000306!2.04e-07!4;CL:0002547!2.04e-07!4 | |ontology_enrichment_celltype=CL:0000062!4.34e-21!11;CL:0000375!4.34e-21!11;CL:0000335!4.34e-21!11;CL:0000035!6.14e-12!20;CL:0002564!1.10e-09!3;CL:0000322!1.41e-09!3;CL:1000306!2.04e-07!4;CL:0002547!2.04e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0002564;5.96e-34;3!CL:0000062;2.19e-12;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002564,5.96e-34,3;CL:0000062,2.16e-10,11;CL:0000375,2.16e-10,11;CL:0000335,2.16e-10,11 | |||
|ontology_enrichment_development_v019=CL:0000335;2.16e-10;11 | |||
|ontology_enrichment_disease=DOID:3910!1.07e-13!2 | |ontology_enrichment_disease=DOID:3910!1.07e-13!2 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004903!1.07e-13!2;UBERON:0002173!1.07e-13!2;UBERON:0002186!1.07e-13!2;UBERON:0000341!1.21e-13!2;UBERON:0002242!1.10e-09!3;UBERON:0003068!1.10e-09!3;UBERON:0002328!1.10e-09!3;UBERON:0004880!1.10e-09!3;UBERON:0004821!1.41e-09!3;UBERON:0003215!1.41e-09!3;UBERON:0002299!1.41e-09!3;UBERON:0006524!1.41e-09!3;UBERON:0008874!1.41e-09!3;UBERON:0002169!1.41e-09!3;UBERON:0004894!1.41e-09!3;UBERON:0000060!3.55e-09!12;UBERON:0000415!2.04e-07!4;UBERON:0007240!2.04e-07!4;UBERON:0005742!2.04e-07!4;UBERON:0005734!2.04e-07!4;UBERON:0004664!2.04e-07!4;UBERON:0004663!2.04e-07!4 | |ontology_enrichment_uberon=UBERON:0004903!1.07e-13!2;UBERON:0002173!1.07e-13!2;UBERON:0002186!1.07e-13!2;UBERON:0000341!1.21e-13!2;UBERON:0002242!1.10e-09!3;UBERON:0003068!1.10e-09!3;UBERON:0002328!1.10e-09!3;UBERON:0004880!1.10e-09!3;UBERON:0004821!1.41e-09!3;UBERON:0003215!1.41e-09!3;UBERON:0002299!1.41e-09!3;UBERON:0006524!1.41e-09!3;UBERON:0008874!1.41e-09!3;UBERON:0002169!1.41e-09!3;UBERON:0004894!1.41e-09!3;UBERON:0000060!3.55e-09!12;UBERON:0000415!2.04e-07!4;UBERON:0007240!2.04e-07!4;UBERON:0005742!2.04e-07!4;UBERON:0005734!2.04e-07!4;UBERON:0004664!2.04e-07!4;UBERON:0004663!2.04e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0002242;5.96e-34;3!UBERON:0011135;5.15e-21;5!UBERON:0002216;5.15e-21;5!UBERON:0011134;5.15e-21;5!UBERON:0002209;5.15e-21;5!UBERON:0002213;5.15e-21;5!UBERON:0007844;5.15e-21;5!UBERON:0011138;5.15e-21;5!UBERON:0001130;5.15e-21;5!UBERON:0001066;5.15e-21;5!UBERON:0001468;5.15e-21;5!UBERON:0004765;1.86e-16;26!UBERON:0004905;1.07e-13;8!UBERON:0000982;1.07e-13;8!UBERON:0004770;1.07e-13;8!UBERON:0001434;1.70e-11;36!UBERON:0000075;1.54e-07;16!UBERON:0001474;7.18e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002242,5.96e-34,3;UBERON:0003068,5.96e-34,3;UBERON:0002328,5.96e-34,3;UBERON:0004880,5.96e-34,3;UBERON:0011135,5.15e-21,5;UBERON:0002216,5.15e-21,5;UBERON:0011134,5.15e-21,5;UBERON:0002209,5.15e-21,5;UBERON:0002213,5.15e-21,5;UBERON:0005856,5.15e-21,5;UBERON:0005866,5.15e-21,5;UBERON:0005863,5.15e-21,5;UBERON:0007844,5.15e-21,5;UBERON:0011138,5.15e-21,5;UBERON:0001130,5.15e-21,5;UBERON:0001066,5.15e-21,5;UBERON:0001468,5.15e-21,5;UBERON:0004905,1.07e-13,8;UBERON:0000982,1.07e-13,8;UBERON:0004770,1.07e-13,8;UBERON:0011137,2.00e-08,14;UBERON:0000075,1.54e-07,16 | |||
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|short_description=p@chr4:88727274..88727278,+ | |short_description=p@chr4:88727274..88727278,+ | ||
}} | }} |
Latest revision as of 07:51, 30 July 2015
Short description: | p@chr4:88727274..88727278, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:88727274..88727278, + |
Coexpression cluster: | C77_Saos2_osteosarcoma_Neutrophils_Natural_Chondrocyte_Basophils_CD8 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nucleus pulposus cell of intervertebral disc | 5.96e-34 | 3 |
osteoblast | 2.16e-10 | 11 |
osteoprogenitor cell | 2.16e-10 | 11 |
mesenchyme condensation cell | 2.16e-10 | 11 |
Ontology term | p-value | n |
---|---|---|
nucleus pulposus | 5.96e-34 | 3 |
axial mesoderm | 5.96e-34 | 3 |
notochord | 5.96e-34 | 3 |
chordamesoderm | 5.96e-34 | 3 |
intervertebral cartilage | 5.15e-21 | 5 |
symphysis | 5.15e-21 | 5 |
nonsynovial joint | 5.15e-21 | 5 |
fibrous joint | 5.15e-21 | 5 |
cartilaginous joint | 5.15e-21 | 5 |
developing mesenchymal condensation | 5.15e-21 | 5 |
pre-cartilage condensation | 5.15e-21 | 5 |
cartilaginous condensation | 5.15e-21 | 5 |
cartilage element | 5.15e-21 | 5 |
post-cranial axial skeletal system | 5.15e-21 | 5 |
vertebral column | 5.15e-21 | 5 |
intervertebral disk | 5.15e-21 | 5 |
intervertebral joint | 5.15e-21 | 5 |
articulation | 1.07e-13 | 8 |
skeletal joint | 1.07e-13 | 8 |
articular system | 1.07e-13 | 8 |
axial skeletal system | 2.00e-08 | 14 |
subdivision of skeletal system | 1.54e-07 | 16 |