FFCP PHASE1:Hg19::chr4:109084747..109084756,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:109084747..109084756,- | |||
|coexpression_cluster_id=C580 | |||
|description=CAGE_peak_at_chr4:109084747..109084756,- | |description=CAGE_peak_at_chr4:109084747..109084756,- | ||
|id=chr4:109084747..109084756,- | |id=chr4:109084747..109084756,- | ||
|ontology_enrichment_celltype=CL:0000084!2.31e-28!25;CL:0000827!2.31e-28!25;CL:0000624!3.29e-27!6;CL:0000791!1.09e-23!18;CL:0000789!1.09e-23!18;CL:0002420!1.09e-23!18;CL:0002419!1.09e-23!18;CL:0000790!1.09e-23!18;CL:0000542!6.25e-16!53;CL:0000051!6.25e-16!53;CL:0000898!1.89e-14!3;CL:0000838!3.91e-14!52;CL:0000815!3.52e-10!2;CL:0000792!3.52e-10!2;CL:0002677!3.52e-10!2;CL:0002087!4.38e-08!119;CL:0000738!3.06e-07!140;CL:0000842!6.55e-07!3;CL:0000625!7.59e-07!11 | |ontology_enrichment_celltype=CL:0000084!2.31e-28!25;CL:0000827!2.31e-28!25;CL:0000624!3.29e-27!6;CL:0000791!1.09e-23!18;CL:0000789!1.09e-23!18;CL:0002420!1.09e-23!18;CL:0002419!1.09e-23!18;CL:0000790!1.09e-23!18;CL:0000542!6.25e-16!53;CL:0000051!6.25e-16!53;CL:0000898!1.89e-14!3;CL:0000838!3.91e-14!52;CL:0000815!3.52e-10!2;CL:0000792!3.52e-10!2;CL:0002677!3.52e-10!2;CL:0002087!4.38e-08!119;CL:0000738!3.06e-07!140;CL:0000842!6.55e-07!3;CL:0000625!7.59e-07!11 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0005425;7.05e-34;1!UBERON:0003056;2.89e-12;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002370!1.65e-11!4;UBERON:0005058!1.65e-11!4;UBERON:0009113!1.65e-11!4;UBERON:0003295!1.65e-11!4;UBERON:0005562!1.65e-11!4;UBERON:0004177!7.60e-11!7;UBERON:0003351!8.35e-08!6;UBERON:0000974!1.02e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.04e-66;2!UBERON:0005058;1.04e-66;2!UBERON:0009113;1.04e-66;2!UBERON:0000941;7.05e-34;1!UBERON:0001785;7.05e-34;1!UBERON:0002464;7.05e-34;1!UBERON:0004904;7.05e-34;1!UBERON:0001021;7.05e-34;1!UBERON:0004177;1.82e-27;5!UBERON:0005057;1.82e-27;5!UBERON:0003714;1.07e-17;2!UBERON:0005162;1.07e-17;2!UBERON:0000122;1.07e-17;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,4.28e-34,4;UBERON:0005058,4.28e-34,4;UBERON:0009113,4.28e-34,4;UBERON:0003295,4.28e-34,4;UBERON:0005562,4.28e-34,4;UBERON:0000941,7.06e-34,1;UBERON:0001785,7.06e-34,1;UBERON:0002464,7.06e-34,1;UBERON:0004904,7.06e-34,1;UBERON:0001021,7.06e-34,1;UBERON:0003902,7.06e-34,1;UBERON:0005425,7.06e-34,1;UBERON:0003351,3.88e-23,6;UBERON:0004177,5.35e-20,7;UBERON:0005057,5.35e-20,7;UBERON:0003714,1.07e-17,2;UBERON:0005162,1.07e-17,2;UBERON:0000122,1.07e-17,2;UBERON:0000974,2.49e-14,10;UBERON:0003408,2.49e-14,10;UBERON:0001042,2.49e-14,10;UBERON:0009145,2.49e-14,10;UBERON:0006562,4.00e-13,11;UBERON:0009722,4.00e-13,11;UBERON:0007690,4.00e-13,11;UBERON:0001781,1.57e-09,4;UBERON:0008814,2.09e-08,18;UBERON:0001557,5.16e-08,19;UBERON:0000966,8.97e-07,6;UBERON:0005388,8.97e-07,6;UBERON:0001802,8.97e-07,6 | |||
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|short_description=p@chr4:109084747..109084756,- | |short_description=p@chr4:109084747..109084756,- | ||
}} | }} |
Latest revision as of 00:47, 30 July 2015
Short description: | p@chr4:109084747..109084756, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:109084747..109084756, - |
Coexpression cluster: | C580_chronic_thymus_Hodgkin_acute_iPS_vein_Burkitt |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
thymus | 4.28e-34 | 4 |
hemolymphoid system gland | 4.28e-34 | 4 |
thymic region | 4.28e-34 | 4 |
pharyngeal gland | 4.28e-34 | 4 |
thymus primordium | 4.28e-34 | 4 |
cranial nerve II | 7.06e-34 | 1 |
cranial nerve | 7.06e-34 | 1 |
nerve trunk | 7.06e-34 | 1 |
nerve connecting eye with brain | 7.06e-34 | 1 |
nerve | 7.06e-34 | 1 |
retinal neural layer | 7.06e-34 | 1 |
presumptive neural retina | 7.06e-34 | 1 |
pharyngeal epithelium | 3.88e-23 | 6 |
hemopoietic organ | 5.35e-20 | 7 |
immune organ | 5.35e-20 | 7 |
neural tissue | 1.07e-17 | 2 |
multi cell component structure | 1.07e-17 | 2 |
neuron projection bundle | 1.07e-17 | 2 |
neck | 2.49e-14 | 10 |
gland of gut | 2.49e-14 | 10 |
chordate pharynx | 2.49e-14 | 10 |
pharyngeal region of foregut | 2.49e-14 | 10 |
pharynx | 4.00e-13 | 11 |
entire pharyngeal arch endoderm | 4.00e-13 | 11 |
early pharyngeal endoderm | 4.00e-13 | 11 |
layer of retina | 1.57e-09 | 4 |
pharyngeal arch system | 2.09e-08 | 18 |
upper respiratory tract | 5.16e-08 | 19 |
retina | 8.97e-07 | 6 |
photoreceptor array | 8.97e-07 | 6 |
posterior segment of eyeball | 8.97e-07 | 6 |