FFCP PHASE1:Hg19::chr3:55522429..55522447,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:55522429..55522447,- | |||
|coexpression_cluster_id=C1080 | |||
|description=CAGE_peak_at_chr3:55522429..55522447,- | |description=CAGE_peak_at_chr3:55522429..55522447,- | ||
|id=chr3:55522429..55522447,- | |id=chr3:55522429..55522447,- | ||
|ontology_enrichment_celltype=CL:0000055!2.55e-22!180;CL:0000057!6.96e-14!75;CL:0000680!3.58e-08!57;CL:0000056!3.58e-08!57;CL:0000355!3.58e-08!57;CL:0002620!5.91e-08!23;CL:0000183!1.31e-07!59;CL:0000187!2.75e-07!54 | |ontology_enrichment_celltype=CL:0000055!2.55e-22!180;CL:0000057!6.96e-14!75;CL:0000680!3.58e-08!57;CL:0000056!3.58e-08!57;CL:0000355!3.58e-08!57;CL:0002620!5.91e-08!23;CL:0000183!1.31e-07!59;CL:0000187!2.75e-07!54 | ||
|ontology_enrichment_celltype_v019=CL:0000134;2.98e-11;55!CL:0000048;6.03e-10;58!CL:0000723;8.55e-10;61!CL:0000349;1.69e-07;19!CL:0002320;2.57e-07;188!CL:0000034;6.75e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,7.54e-11,76;CL:0000349,1.05e-07,19;CL:0000048,1.15e-07,427;CL:0000723,4.33e-07,433 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!3.33e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.69e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,9.38e-09,14 | |||
|ontology_enrichment_uberon=UBERON:0003102!9.78e-13!95;UBERON:0000475!5.77e-12!365;UBERON:0000914!8.99e-10!83;UBERON:0002329!8.99e-10!83;UBERON:0003077!8.99e-10!83;UBERON:0003059!8.99e-10!83;UBERON:0007282!8.99e-10!83;UBERON:0009618!8.99e-10!83;UBERON:0007285!8.99e-10!83;UBERON:0002199!9.62e-09!45;UBERON:0002416!9.62e-09!45;UBERON:0000468!7.02e-08!659;UBERON:0004290!7.95e-08!70;UBERON:0000486!8.99e-08!82;UBERON:0002097!1.09e-07!40;UBERON:0005256!1.84e-07!143;UBERON:0000481!5.44e-07!347 | |ontology_enrichment_uberon=UBERON:0003102!9.78e-13!95;UBERON:0000475!5.77e-12!365;UBERON:0000914!8.99e-10!83;UBERON:0002329!8.99e-10!83;UBERON:0003077!8.99e-10!83;UBERON:0003059!8.99e-10!83;UBERON:0007282!8.99e-10!83;UBERON:0009618!8.99e-10!83;UBERON:0007285!8.99e-10!83;UBERON:0002199!9.62e-09!45;UBERON:0002416!9.62e-09!45;UBERON:0000468!7.02e-08!659;UBERON:0004290!7.95e-08!70;UBERON:0000486!8.99e-08!82;UBERON:0002097!1.09e-07!40;UBERON:0005256!1.84e-07!143;UBERON:0000481!5.44e-07!347 | ||
|ontology_enrichment_uberon_v019=UBERON:0000305;1.97e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,2.32e-10,99;UBERON:0000305,1.67e-07,7;UBERON:0002199,1.71e-07,46;UBERON:0002416,1.71e-07,46;UBERON:0002097,6.32e-07,41 | |||
|phase1_expression=1.81678379270557,1.2846031433459,0.563817616383885,4.00293193412522,4.46961094427288,4.36169262050184,2.53299878168311,0.631719873426831,0.522371256399677,0,0,4.15038607047327,12.3970479767373,1.23766352960047,1.65698687863958,0.672325146451775,1.80808358407193,3.65155045193687,2.43966399395253,3.0780264519197,4.69201589861782,3.13454721478088,0.286235987131057,2.32686522623903,0.251085279189606,0.152826811495903,0.0821005894499457,0.236132343941038,0,0,0.154816123316076,0.919421224478927,0.6024118375565,0,0.232401601740905,0.426507697462265,0,0,0,0,0.223915474239924,0.32389366601898,0,0,1.51150377475524,0.485168122375632,0,0,0.309706370895104,0,0,0,0,0,0,0,1.09162460023138,0,0.306083892370903,0,0,0.329851300186716,0.199463657621632,0,0.290209238628584,1.70215567407342,1.24564449799115,0,0.521482918420201,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,2.01210257911091,0,6.50590474292219,3.50936537445123,6.0835537963546,3.9764297352555,3.40644409211845,2.3633704291017,3.76939975686359,2.45937399940753,0.392937226493138,0.364295288292542,0.370784442784429,0.649094787309367,0.522389211897802,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52054421143703,0.732186172644509,0,0,0,0,0,0,0,0,0,0,0,2.98183171017191,0.12663051166458,0.794455084879313,0.573673241497627,1.06400514659507,0.560677600142307,0,1.2333377420858,0,0.808264032418128,0.326923806226917,3.02714855289863,1.72852777344,0.70296429550139,0.936480230490962,0,0.448346041655403,0.704606991862589,0.971237666208789,0.842704840213491,1.42907919878425,1.59684612505298,1.03325781175765,40.3920971475898,42.0353779773547,0.910161361938026,2.15585442544872,0.168336113954066,1.37630371859161,0.831192346452549,6.14568669233173,12.8724874235588,22.2352327181763,0.453728732640084,4.48474089222155,5.33893472046419,2.54318281391474,3.90118424909723,5.77094163735258,5.41045134095821,5.02515512095292,0.675105328965065,2.04617710838517,5.3011092591264,5.52299391853796,1.45481451136931,3.55009592516614,2.31729825923573,1.69560592310488,1.15956511897978,0.272746120590835,0.573609190778008,0.243947412259191,0.132529768321485,0.580969714347592,0.518305275076852,0.252320850875628,0.36497735907583,14.0804579096834,15.4377825166292,2.76269842704961,5.10804720835177,4.33127689001751,0.473227200159376,0.674338760312407,0.482022059766964,0.330881918197182,1.30727666455444,0.71181185733329,0.269662616320329,0.196221465125346,0.769494313892781,0,4.20725321410337,2.4694440679884,0,1.26755034821831,0,0,0,0.122988438543114,1.71567810298526,0.768251997860379,0,0.100528972411631,0.740707561268237,1.3032332212413,7.27954349695705,4.3299402607582,1.04337364477569,2.34817388471643,0,0,0,0,0,0,0,0,0,1.51183915378974,0.141775097242386,0.0895585227028483,0,0,0,0,0,0,0,0.126995788584338,0,0,0,0.411309970813294,0,0,1.00917975910825,3.92364061949952,0.5867062865676,1.42198887333556,3.57656445851882,4.22651376278,9.30783408047047,14.5610411675913,1.02882949704857,0,1.8649552531127,2.14466990487221,2.71310802695722,2.46972101034231,1.95441710576241,1.42156779497018,11.8792780940014,6.02878754119172,3.48613383440118,4.89867656792079,0,0,0,0.479249710983165,0,4.27910715122155,1.30303176000821,2.67119219315498,2.68591444859843,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,1.71768088406796,0.500170521059677,2.71265023699736,1.24782516918484,2.3195768543631,3.46945313074656,2.34282829985426,0.601892199455438,2.27407504055985,1.03473071292505,1.32845119707087,2.76553752812555,3.12781012085098,0.783204629850962,1.37257369524342,0,0,0,0,1.66435439510497,5.74541557326393,0.992431231275107,0.460385919864187,2.80660094433074,1.02511319404561,0.511707249066704,1.28683136914886,0,3.54682295746108,1.42049380250502,1.39616165223476,8.30807086693794,2.44041794765914,0,3.80962293576241,0.368323955743585,1.7222167224691,4.18809686415449,3.2781103739856,0.902399225814824,0,1.56869953835371,0,0.211103257785751,1.13733384070897,0.170093705276516,1.0795795805107,1.54227252690289,0.270946437543853,1.50506932156456,0,0,0.223874754722178,0,0,0.512900250232778,0,0,0.309123034943167,1.28197250745681,0.82509499920588,2.29706215198469,2.60024098414608,0,2.03008508413456,0.308097234229289,0.614014698904518,2.20538515975249,0.751941714077915,2.75531718437034,0.852266274161009,0.801288320820636,0,0.768760269460425,0.127612712494584,0.10115778085555,3.71876439437829,7.24068397710472,1.3940745403212,0,0,4.34966496037536,0.55597265731176,0.572499546967965,1.48863347743867,1.2655176988749,1.71567174531442,1.27948895655667,1.28381696410176,0.636406495851874,0.78494864019923,1.79872457583315,4.11805544604082,1.17812402345686,0.606547444719948,0,0.842516912477962,1.95053495635836,0.974853958525138,0,6.00599610195137,4.3835683905651,1.13008116620243,0.551365343546124,0.66343897524122,0.876901770507525,0,0.655894752046633,0.811641507850816,0.92947049429925,1.69017361519345,0.717056761020258,1.57198465620994,0,0,0.211107635297664,2.305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| ||
|short_description=p@chr3:55522429..55522447,- | |short_description=p@chr3:55522429..55522447,- | ||
}} | }} |
Latest revision as of 22:44, 29 July 2015
Short description: | p@chr3:55522429..55522447, - |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:55522429..55522447, - |
Coexpression cluster: | C1080_Fibroblast_mesenchymal_neuroectodermal_Hair_Mesenchymal_Smooth_alveolar |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 7.54e-11 | 76 |
extraembryonic cell | 1.05e-07 | 19 |
multi fate stem cell | 1.15e-07 | 427 |
somatic stem cell | 4.33e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
surface structure | 2.32e-10 | 99 |
amnion | 1.67e-07 | 7 |
integument | 1.71e-07 | 46 |
integumental system | 1.71e-07 | 46 |
skin of body | 6.32e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 9.38e-09 | 14 |