FFCP PHASE1:Hg19::chr3:195548504..195548530,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:195548504..195548530,+ | |||
|description=CAGE_peak_at_chr3:195548504..195548530,+ | |description=CAGE_peak_at_chr3:195548504..195548530,+ | ||
|id=chr3:195548504..195548530,+ | |id=chr3:195548504..195548530,+ | ||
|ontology_enrichment_celltype=CL:1000415!6.78e-16!2 | |ontology_enrichment_celltype=CL:1000415!6.78e-16!2 | ||
|ontology_enrichment_celltype_v019=CL:1000415;1.15e-15;2!CL:0000322;1.04e-10;3 | |ontology_enrichment_celltype_v019=CL:1000415;1.15e-15;2!CL:0000322;1.04e-10;3 | ||
|ontology_enrichment_celltype_v019_2=CL:1000415,1.15e-15,2;CL:0000322,8.99e-11,3 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:305!3.17e-17!106;DOID:0050687!2.46e-15!143;DOID:1749!2.66e-13!14;DOID:162!4.25e-10!235;DOID:14566!8.31e-10!239;DOID:3111!4.19e-09!1;DOID:3603!4.19e-09!1;DOID:178!1.32e-08!1;DOID:326!1.32e-08!1;DOID:3978!1.32e-08!1;DOID:3394!1.32e-08!1;DOID:5844!1.32e-08!1;DOID:2355!2.06e-08!1;DOID:1287!4.15e-08!4;DOID:299!2.11e-07!25 | |ontology_enrichment_disease=DOID:305!3.17e-17!106;DOID:0050687!2.46e-15!143;DOID:1749!2.66e-13!14;DOID:162!4.25e-10!235;DOID:14566!8.31e-10!239;DOID:3111!4.19e-09!1;DOID:3603!4.19e-09!1;DOID:178!1.32e-08!1;DOID:326!1.32e-08!1;DOID:3978!1.32e-08!1;DOID:3394!1.32e-08!1;DOID:5844!1.32e-08!1;DOID:2355!2.06e-08!1;DOID:1287!4.15e-08!4;DOID:299!2.11e-07!25 | ||
|ontology_enrichment_disease_v019=DOID:3111;2.73e-29;1!DOID:3603;2.73e-29;1!DOID:3910;2.21e-15;2!DOID:4929;2.21e-15;2!DOID:299;6.92e-11;25!DOID:3908;6.21e-07;5 | |ontology_enrichment_disease_v019=DOID:3111;2.73e-29;1!DOID:3603;2.73e-29;1!DOID:3910;2.21e-15;2!DOID:4929;2.21e-15;2!DOID:299;6.92e-11;25!DOID:3908;6.21e-07;5 | ||
|ontology_enrichment_disease_v019_2=DOID:3111,2.37e-29,1;DOID:3603,2.37e-29,1;DOID:3910,1.78e-15,2;DOID:4929,2.37e-15,2;DOID:299,6.93e-11,25;DOID:305,7.18e-10,106;DOID:0050687,2.36e-07,143;DOID:3908,5.70e-07,5 | |||
|ontology_enrichment_uberon=UBERON:0002294!1.48e-26!7;UBERON:0001173!1.48e-26!7;UBERON:0004912!1.48e-26!7;UBERON:0002394!1.74e-17!4;UBERON:0003928!1.74e-17!4;UBERON:0003127!4.00e-16!2;UBERON:0002110!6.61e-11!3;UBERON:0006242!6.61e-11!3;UBERON:0000997!3.31e-09!1;UBERON:0005056!3.31e-09!1;UBERON:0004913!4.52e-09!1;UBERON:0003703!4.52e-09!1;UBERON:0001174!4.52e-09!1;UBERON:0004914!4.52e-09!1;UBERON:0001007!6.67e-08!155;UBERON:0001555!6.67e-08!155;UBERON:0007026!6.67e-08!155;UBERON:0009497!2.56e-07!25;UBERON:0000015!2.56e-07!25;UBERON:0002423!2.56e-07!25;UBERON:0006235!2.56e-07!25;UBERON:0004161!2.56e-07!25;UBERON:0004119!5.04e-07!169;UBERON:0000925!5.04e-07!169;UBERON:0006595!5.04e-07!169 | |ontology_enrichment_uberon=UBERON:0002294!1.48e-26!7;UBERON:0001173!1.48e-26!7;UBERON:0004912!1.48e-26!7;UBERON:0002394!1.74e-17!4;UBERON:0003928!1.74e-17!4;UBERON:0003127!4.00e-16!2;UBERON:0002110!6.61e-11!3;UBERON:0006242!6.61e-11!3;UBERON:0000997!3.31e-09!1;UBERON:0005056!3.31e-09!1;UBERON:0004913!4.52e-09!1;UBERON:0003703!4.52e-09!1;UBERON:0001174!4.52e-09!1;UBERON:0004914!4.52e-09!1;UBERON:0001007!6.67e-08!155;UBERON:0001555!6.67e-08!155;UBERON:0007026!6.67e-08!155;UBERON:0009497!2.56e-07!25;UBERON:0000015!2.56e-07!25;UBERON:0002423!2.56e-07!25;UBERON:0006235!2.56e-07!25;UBERON:0004161!2.56e-07!25;UBERON:0004119!5.04e-07!169;UBERON:0000925!5.04e-07!169;UBERON:0006595!5.04e-07!169 | ||
|ontology_enrichment_uberon_v019=UBERON:0000997;9.99e-30;1!UBERON:0005056;9.99e-30;1!UBERON:0004176;9.99e-30;1!UBERON:0004913;2.73e-29;1!UBERON:0003703;2.73e-29;1!UBERON:0001174;2.73e-29;1!UBERON:0004914;2.73e-29;1!UBERON:0002294;3.28e-17;7!UBERON:0001173;3.28e-17;7!UBERON:0003127;2.21e-15;2!UBERON:0004903;2.21e-15;2!UBERON:0002173;2.21e-15;2!UBERON:0002186;2.21e-15;2!UBERON:0000058;2.98e-12;10!UBERON:0002110;6.73e-11;3!UBERON:0004821;1.04e-10;3!UBERON:0007499;1.04e-10;3!UBERON:0003215;1.04e-10;3!UBERON:0010368;1.04e-10;3!UBERON:0009911;1.04e-10;3!UBERON:0002299;1.04e-10;3!UBERON:0002114;1.04e-10;2!UBERON:0006524;1.04e-10;3!UBERON:0008874;1.04e-10;3!UBERON:0002169;1.04e-10;3!UBERON:0004894;1.04e-10;3!UBERON:0007196;1.71e-08;15!UBERON:0001558;1.71e-08;15!UBERON:0002394;2.35e-08;4!UBERON:0003928;2.35e-08;4!UBERON:0009856;2.35e-08;4!UBERON:0003134;7.13e-08;33!UBERON:0000474;2.48e-07;37!UBERON:0002108;6.21e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0000997;9.99e-30;1!UBERON:0005056;9.99e-30;1!UBERON:0004176;9.99e-30;1!UBERON:0004913;2.73e-29;1!UBERON:0003703;2.73e-29;1!UBERON:0001174;2.73e-29;1!UBERON:0004914;2.73e-29;1!UBERON:0002294;3.28e-17;7!UBERON:0001173;3.28e-17;7!UBERON:0003127;2.21e-15;2!UBERON:0004903;2.21e-15;2!UBERON:0002173;2.21e-15;2!UBERON:0002186;2.21e-15;2!UBERON:0000058;2.98e-12;10!UBERON:0002110;6.73e-11;3!UBERON:0004821;1.04e-10;3!UBERON:0007499;1.04e-10;3!UBERON:0003215;1.04e-10;3!UBERON:0010368;1.04e-10;3!UBERON:0009911;1.04e-10;3!UBERON:0002299;1.04e-10;3!UBERON:0002114;1.04e-10;2!UBERON:0006524;1.04e-10;3!UBERON:0008874;1.04e-10;3!UBERON:0002169;1.04e-10;3!UBERON:0004894;1.04e-10;3!UBERON:0007196;1.71e-08;15!UBERON:0001558;1.71e-08;15!UBERON:0002394;2.35e-08;4!UBERON:0003928;2.35e-08;4!UBERON:0009856;2.35e-08;4!UBERON:0003134;7.13e-08;33!UBERON:0000474;2.48e-07;37!UBERON:0002108;6.21e-07;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000997,9.99e-30,1;UBERON:0005056,9.99e-30,1;UBERON:0004913,3.16e-29,1;UBERON:0003703,3.16e-29,1;UBERON:0001174,3.16e-29,1;UBERON:0004914,3.16e-29,1;UBERON:0004903,1.78e-15,2;UBERON:0002173,1.78e-15,2;UBERON:0002186,1.78e-15,2;UBERON:0003127,2.74e-15,2;UBERON:0002294,1.31e-13,9;UBERON:0001173,1.31e-13,9;UBERON:0004912,1.31e-13,9;UBERON:0002110,6.73e-11,3;UBERON:0006242,6.73e-11,3;UBERON:0004821,8.99e-11,3;UBERON:0003215,8.99e-11,3;UBERON:0010368,8.99e-11,3;UBERON:0009911,8.99e-11,3;UBERON:0002299,8.99e-11,3;UBERON:0006524,8.99e-11,3;UBERON:0008874,8.99e-11,3;UBERON:0002169,8.99e-11,3;UBERON:0004894,8.99e-11,3;UBERON:0002114,1.09e-10,2;UBERON:0007196,1.71e-08,15;UBERON:0001558,1.71e-08,15;UBERON:0003134,1.30e-07,37;UBERON:0000474,1.30e-07,37;UBERON:0003100,6.27e-07,41;UBERON:0002108,6.39e-07,4;UBERON:0000058,6.57e-07,19 | |||
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|short_description=p@chr3:195548504..195548530,+ | |short_description=p@chr3:195548504..195548530,+ | ||
}} | }} |
Latest revision as of 19:46, 29 July 2015
Short description: | p@chr3:195548504..195548530, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:195548504..195548530, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of gall bladder | 1.15e-15 | 2 |
pneumocyte | 8.99e-11 | 3 |
Ontology term | p-value | n |
---|---|---|
mammalian vulva | 9.99e-30 | 1 |
external female genitalia | 9.99e-30 | 1 |
hepatopancreatic ampulla | 3.16e-29 | 1 |
extrahepatic bile duct | 3.16e-29 | 1 |
common bile duct | 3.16e-29 | 1 |
duodenal papilla | 3.16e-29 | 1 |
bronchoalveolar duct junction | 1.78e-15 | 2 |
alveolar duct | 1.78e-15 | 2 |
bronchiole | 1.78e-15 | 2 |
open tracheal system trachea | 2.74e-15 | 2 |
biliary system | 1.31e-13 | 9 |
biliary tree | 1.31e-13 | 9 |
biliary bud | 1.31e-13 | 9 |
gallbladder | 6.73e-11 | 3 |
gall bladder primordium | 6.73e-11 | 3 |
pulmonary alveolus epithelium | 8.99e-11 | 3 |
alveolus | 8.99e-11 | 3 |
pulmonary lobule | 8.99e-11 | 3 |
lobule | 8.99e-11 | 3 |
alveolus of lung | 8.99e-11 | 3 |
alveolar system | 8.99e-11 | 3 |
pulmonary acinus | 8.99e-11 | 3 |
alveolar sac | 8.99e-11 | 3 |
alveolar wall | 8.99e-11 | 3 |
duodenum | 1.09e-10 | 2 |
tracheobronchial tree | 1.71e-08 | 15 |
lower respiratory tract | 1.71e-08 | 15 |
female reproductive organ | 1.30e-07 | 37 |
female reproductive system | 1.30e-07 | 37 |
female organism | 6.27e-07 | 41 |
small intestine | 6.39e-07 | 4 |
duct | 6.57e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
cystadenocarcinoma | 2.37e-29 | 1 |
mucinous cystadenocarcinoma | 2.37e-29 | 1 |
lung adenocarcinoma | 1.78e-15 | 2 |
tubular adenocarcinoma | 2.37e-15 | 2 |
adenocarcinoma | 6.93e-11 | 25 |
carcinoma | 7.18e-10 | 106 |
cell type cancer | 2.36e-07 | 143 |
non-small cell lung carcinoma | 5.70e-07 | 5 |