FFCP PHASE1:Hg19::chr3:170150373..170150387,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:170150373..170150387,+ | |||
|coexpression_cluster_id=C635 | |||
|description=CAGE_peak_at_chr3:170150373..170150387,+ | |description=CAGE_peak_at_chr3:170150373..170150387,+ | ||
|id=chr3:170150373..170150387,+ | |id=chr3:170150373..170150387,+ | ||
|ontology_enrichment_celltype=CL:0000055!2.16e-17!180;CL:0000222!6.81e-17!119;CL:0000183!1.72e-16!59;CL:0000187!9.06e-14!54;CL:0000680!1.84e-13!57;CL:0000056!1.84e-13!57;CL:0000355!1.84e-13!57;CL:0000057!2.27e-12!75;CL:0000393!4.07e-12!60;CL:0000211!4.07e-12!60;CL:0000192!6.99e-11!42;CL:0000514!6.99e-11!42;CL:0000220!6.00e-07!246;CL:0002321!9.53e-07!248 | |ontology_enrichment_celltype=CL:0000055!2.16e-17!180;CL:0000222!6.81e-17!119;CL:0000183!1.72e-16!59;CL:0000187!9.06e-14!54;CL:0000680!1.84e-13!57;CL:0000056!1.84e-13!57;CL:0000355!1.84e-13!57;CL:0000057!2.27e-12!75;CL:0000393!4.07e-12!60;CL:0000211!4.07e-12!60;CL:0000192!6.99e-11!42;CL:0000514!6.99e-11!42;CL:0000220!6.00e-07!246;CL:0002321!9.53e-07!248 | ||
|ontology_enrichment_celltype_v019=CL:0002582;3.10e-12;3!CL:0002504;1.05e-11;3!CL:1000279;1.05e-11;3!CL:1000280;1.05e-11;3!CL:0002602;2.74e-09;2!CL:0002575;4.00e-09;2!CL:0002583;5.84e-09;2!CL:0002549;9.71e-09;2!CL:0002554;9.71e-09;2!CL:0002600;2.30e-08;2!CL:0002334;6.22e-08;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0002582,5.75e-12,3;CL:0002504,7.22e-12,3;CL:1000279,7.22e-12,3;CL:1000280,7.22e-12,3;CL:0000057,1.45e-10,76;CL:0002602,3.04e-09,2;CL:0002575,3.29e-09,2;CL:0002583,4.02e-09,2;CL:0002554,4.53e-09,2;CL:0002549,7.00e-09,2;CL:0002600,2.23e-08,2;CL:0002334,6.89e-08,12;CL:0000192,8.76e-07,43;CL:0000514,8.76e-07,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.47e-14!83;UBERON:0002329!2.47e-14!83;UBERON:0003077!2.47e-14!83;UBERON:0003059!2.47e-14!83;UBERON:0007282!2.47e-14!83;UBERON:0009618!2.47e-14!83;UBERON:0007285!2.47e-14!83;UBERON:0004290!1.32e-13!70;UBERON:0001134!7.18e-12!61;UBERON:0002036!7.18e-12!61;UBERON:0003082!7.18e-12!61;UBERON:0000119!9.40e-12!312;UBERON:0000486!1.57e-11!82;UBERON:0002049!3.36e-11!79;UBERON:0007798!3.36e-11!79;UBERON:0002385!3.69e-11!63;UBERON:0001015!3.69e-11!63;UBERON:0000383!3.69e-11!63;UBERON:0000483!1.09e-10!309;UBERON:0005256!3.55e-10!143;UBERON:0000477!5.85e-10!286;UBERON:0001009!3.73e-09!113;UBERON:0004535!3.81e-09!110;UBERON:0001473!3.15e-08!8;UBERON:0004536!3.15e-08!8;UBERON:0006558!3.15e-08!8;UBERON:0004111!6.44e-08!241;UBERON:0000475!2.56e-07!365;UBERON:0000055!2.78e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0011135;1.44e-13;5!UBERON:0002216;1.44e-13;5!UBERON:0011134;1.44e-13;5!UBERON:0002209;1.44e-13;5!UBERON:0002213;1.44e-13;5!UBERON:0007844;1.44e-13;5!UBERON:0011138;1.44e-13;5!UBERON:0001130;1.44e-13;5!UBERON:0001066;1.44e-13;5!UBERON:0001468;1.44e-13;5!UBERON:0004905;1.54e-12;8!UBERON:0000982;1.54e-12;8!UBERON:0004770;1.54e-12;8!UBERON:0006444;2.74e-09;2!UBERON:0001995;2.74e-09;2!UBERON:0004715;2.74e-09;2!UBERON:0005629;9.71e-09;2!UBERON:0005358;9.71e-09;2!UBERON:0001886;9.71e-09;2!UBERON:0004086;9.71e-09;2!UBERON:0005282;9.71e-09;2!UBERON:0005281;9.71e-09;2!UBERON:0001473;9.72e-08;8!UBERON:0004536;9.72e-08;8!UBERON:0006558;9.72e-08;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0011135,1.54e-13,5;UBERON:0002216,1.54e-13,5;UBERON:0011134,1.54e-13,5;UBERON:0002209,1.54e-13,5;UBERON:0002213,1.54e-13,5;UBERON:0005856,1.54e-13,5;UBERON:0005866,1.54e-13,5;UBERON:0005863,1.54e-13,5;UBERON:0007844,1.54e-13,5;UBERON:0011138,1.54e-13,5;UBERON:0001130,1.54e-13,5;UBERON:0001066,1.54e-13,5;UBERON:0001468,1.54e-13,5;UBERON:0004905,1.22e-12,8;UBERON:0000982,1.22e-12,8;UBERON:0004770,1.22e-12,8;UBERON:0006444,3.04e-09,2;UBERON:0001995,3.04e-09,2;UBERON:0004715,3.04e-09,2;UBERON:0005629,7.00e-09,2;UBERON:0005358,7.00e-09,2;UBERON:0001886,7.00e-09,2;UBERON:0004086,7.00e-09,2;UBERON:0005282,7.00e-09,2;UBERON:0005281,7.00e-09,2;UBERON:0001473,5.18e-08,8;UBERON:0004536,5.18e-08,8;UBERON:0006558,5.18e-08,8 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0.982935746006035,0,0,0,2.22779435328084,3.31397375727916,0.672325146451775,0,1.46062018077475,0.487932798790507,0.492484232307152,1.02000345622126,0,0,0,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.767175371061182,0,0,0.144846518960824,0,0,0.0945348171640679,0.221729397462564,0.175669571386252,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0.417989933073621,0.258416759169329,1.42306505074684,0.66944122552934,0.805658634218294,0,0,0.367663080345869,0,0.803697554556718,0,0.337834441449967,0,0,0,0,0,0,0.496971951695318,0.25326102332916,0.264818361626438,1.14734648299525,0,0,0,0.24666754841716,0,0.134710672069688,0.326923806226917,2.11900398702904,1.72852777344,0,0,0,1.64393548606981,1.17434498643765,0.809364721840658,0.421352420106746,0,0.737005903870608,0,0,0,1.82032272387605,2.87447256726495,0.168336113954066,0,0.277064115484183,0,0,0.150238058906597,0.113432183160021,0,0,0,0,0.206105058476878,0,0,0.168776332241266,0,0,0.184099797284599,1.13152239773168,0,0.10075209822764,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,2.94017422771084,0,0,0,0,0,0.686271241194102,0,0,0,0,0.651616610620649,1.03993478527958,0,0,0,0.144366447761074,1.38895653772983,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,1.30788020649984,0.36669142910475,0.129271715757778,0,0,0,0,1.28603687131071,0,0.266422179016099,0,0,0,0,0,0.791951872933429,0.301439377059586,0,0.599837947092342,0,0,0,0,0,0,0,0.410952645100767,0,0,0,0,0,0,0,0,0,0,0,0,0,2.33113834266366,6.00204625271613,0.813795071099207,1.24782516918484,0.713715955188647,0.157702415033935,0.585707074963566,0,0,1.03473071292505,0,0.184369168541703,0,2.34961388955289,2.74514739048685,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0.160853921143607,0,4.1636617326717,1.59805552781814,1.14978018419333,1.03850885836724,3.1376802184189,0,0,0,0.918515585316854,2.73136752010076,4.45823010862042,0,0,0,0,0.105551628892876,2.27466768141793,2.04112446331819,0.215915916102139,0,0,0.501689773854853,1.01950509218015,0,0.223874754722178,0,0,0,0.656029291399411,0,0,0,0,0,0.650060246036521,0,0.096670718292122,0.462145851343933,0.460511024178389,0,0.322260734604821,0.435050081742686,0.426133137080504,0,0,0,0,0,0.464845549297286,0.31481234683064,0,0,0,0,0,0.143124886741991,0,0.316379424718726,0.38126038784765,0,0,0.318203247925937,0,1.2591072030832,1.37268514868027,1.29593642580255,0.202182481573316,0,0.421258456238981,0.48763373908959,1.21856744815642,0,0.9554993798559,3.11091950298168,0,0,0,0.438450885253763,1.15755106853338,1.31178950409327,1.01455188481352,0,0.281695602532241,0,0.196498082026242,1.07001315444375,0.709522128141196,0,1.64647446479951,0,0.699869440489966,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281338832821026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219385397153973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471807930864739,0,0.468528891450678,0,0,0,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0.273810757783986,0,0.859530882839914,0,0,0,0,0,0.429226048136571,0,0,0,0,0,0,0,0,0,0,0.136203406111576,0.160753148465019,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.79339561045614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0,0,0,0,0.248385611765534,0,0,0,0,0,0,0,0.895528817321244,0.233713309847224,3.88364103051829,0,0.251567901752575,0,0.915360273587694,0.604923695052956,0.15543720058278,0,0.477890301491107,0.449803112163605,0.155262956876259,0.414706207840855,0,0,0.150257608997218,0.761610424337591,0,0.727394636810238,0.214821114084977,0.464033759878494,0.796191777397232,0,0,0,0,0,0,0.260994291965212,0,2.31522474323834,0.97894681802587,0.179088841081487,0,0,0,0,0.337884881306145,0,0,3.64631947412859,0,0,0,0,0,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.3062454773532,0,0,0.319267718114302,0.205116364240755,0.252071696221718,0.0691572524642179,0.161475645631851,2.85538840518309,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.202612753855184,0,0,0,0,0,0,0,0.766574565837572,0,0,0,0,0,0,0,0.135939465953663,0,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236664001461131,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0.45178432815584,0,0,0,0.218559560503957,0,0,0,1.17785080268967,0,2.113278637917,0,0,0.0644578879735772,0,0,0,0,0,0,0.860037498908708,0,0,0,0,1.85997509083376,0.924351257262837,2.16313281061895,0,0,1.0135880080915,0,0,0,0,0.378893491091197,0.535928260312357,0.829169439458779,0.413731983447581,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426909383510862,0,0,0,0.122241444182866,0,0,0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| ||
|short_description=p@chr3:170150373..170150387,+ | |short_description=p@chr3:170150373..170150387,+ | ||
}} | }} |
Latest revision as of 18:10, 29 July 2015
Short description: | p@chr3:170150373..170150387, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:170150373..170150387, + |
Coexpression cluster: | C635_Fibroblast_Pericytes_Nucleus_Preadipocyte_Smooth_mesothelioma_Prostate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
visceral preadipocyte | 5.75e-12 | 3 |
enteric smooth muscle cell | 7.22e-12 | 3 |
smooth muscle cell of large intestine | 7.22e-12 | 3 |
smooth muscle cell of colon | 7.22e-12 | 3 |
fibroblast | 1.45e-10 | 76 |
annulus pulposus cell | 3.04e-09 | 2 |
central nervous system pericyte | 3.29e-09 | 2 |
subcutaneous preadipocyte | 4.02e-09 | 2 |
fibroblast of lymphatic vessel | 4.53e-09 | 2 |
fibroblast of choroid plexus | 7.00e-09 | 2 |
smooth muscle cell of trachea | 2.23e-08 | 2 |
preadipocyte | 6.89e-08 | 12 |
smooth muscle cell | 8.76e-07 | 43 |
smooth muscle myoblast | 8.76e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
intervertebral cartilage | 1.54e-13 | 5 |
symphysis | 1.54e-13 | 5 |
nonsynovial joint | 1.54e-13 | 5 |
fibrous joint | 1.54e-13 | 5 |
cartilaginous joint | 1.54e-13 | 5 |
developing mesenchymal condensation | 1.54e-13 | 5 |
pre-cartilage condensation | 1.54e-13 | 5 |
cartilaginous condensation | 1.54e-13 | 5 |
cartilage element | 1.54e-13 | 5 |
post-cranial axial skeletal system | 1.54e-13 | 5 |
vertebral column | 1.54e-13 | 5 |
intervertebral disk | 1.54e-13 | 5 |
intervertebral joint | 1.54e-13 | 5 |
articulation | 1.22e-12 | 8 |
skeletal joint | 1.22e-12 | 8 |
articular system | 1.22e-12 | 8 |
annulus fibrosus | 3.04e-09 | 2 |
fibrocartilage | 3.04e-09 | 2 |
annulus fibrosus disci intervertebralis | 3.04e-09 | 2 |
vascular plexus | 7.00e-09 | 2 |
ventricle of nervous system | 7.00e-09 | 2 |
choroid plexus | 7.00e-09 | 2 |
brain ventricle | 7.00e-09 | 2 |
ventricular system of brain | 7.00e-09 | 2 |
ventricular system of central nervous system | 7.00e-09 | 2 |
lymphatic vessel | 5.18e-08 | 8 |
lymph vasculature | 5.18e-08 | 8 |
lymphatic part of lymphoid system | 5.18e-08 | 8 |