FFCP PHASE1:Hg19::chr2:242824118..242824127,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=19bp_to_ENST00000429947_5end | |association_with_transcript=19bp_to_ENST00000429947_5end | ||
|cluster_id=chr2:242824118..242824127,+ | |||
|coexpression_cluster_id=C2695 | |||
|description=CAGE_peak_4_at_ENST00000429947_5end | |description=CAGE_peak_4_at_ENST00000429947_5end | ||
|id=chr2:242824118..242824127,+ | |id=chr2:242824118..242824127,+ | ||
|ontology_enrichment_celltype=CL:0000945!6.31e-28!24;CL:0000826!6.31e-28!24;CL:0000542!3.26e-23!53;CL:0000051!3.26e-23!53;CL:0000838!1.10e-21!52;CL:0000236!3.14e-13!14;CL:0000037!2.39e-10!172;CL:0000566!2.39e-10!172;CL:0000988!5.44e-10!182;CL:0000784!1.13e-08!3;CL:0002032!3.94e-08!165;CL:0000837!3.94e-08!165;CL:0000817!3.99e-08!3;CL:0002087!6.41e-08!119;CL:0000738!8.24e-08!140 | |ontology_enrichment_celltype=CL:0000945!6.31e-28!24;CL:0000826!6.31e-28!24;CL:0000542!3.26e-23!53;CL:0000051!3.26e-23!53;CL:0000838!1.10e-21!52;CL:0000236!3.14e-13!14;CL:0000037!2.39e-10!172;CL:0000566!2.39e-10!172;CL:0000988!5.44e-10!182;CL:0000784!1.13e-08!3;CL:0002032!3.94e-08!165;CL:0000837!3.94e-08!165;CL:0000817!3.99e-08!3;CL:0002087!6.41e-08!119;CL:0000738!8.24e-08!140 | ||
|ontology_enrichment_celltype_v019=CL:0000784;4.83e-19;3!CL:0000236;1.71e-16;13!CL:0002032;8.17e-15;1!CL:0000557;8.17e-15;1!CL:0000817;1.97e-14;1!CL:0000945;1.09e-13;24!CL:0000333;1.95e-11;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000784,4.62e-19,3;CL:0000236,2.68e-15,14;CL:0000945,1.25e-13,24;CL:0000826,1.25e-13,24 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:171!6.53e-12!10;DOID:3095!4.11e-09!22;DOID:2994!4.11e-09!22;DOID:2531!4.73e-08!51;DOID:0060083!4.73e-08!51 | |ontology_enrichment_disease=DOID:171!6.53e-12!10;DOID:3095!4.11e-09!22;DOID:2994!4.11e-09!22;DOID:2531!4.73e-08!51;DOID:0060083!4.73e-08!51 | ||
|ontology_enrichment_disease_v019=DOID:171;2.06e-21;10!DOID:3095;6.72e-10;22!DOID:2994;6.72e-10;22!DOID:169;1.10e-09;6!DOID:3193;7.27e-08;2!DOID:962;7.27e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:171,1.96e-21,10;DOID:3095,6.57e-10,22;DOID:2994,6.57e-10,22;DOID:169,1.21e-09,6;DOID:3193,6.58e-08,2;DOID:962,6.58e-08,2 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.95e-27;2!UBERON:0005058;1.95e-27;2!UBERON:0009113;1.95e-27;2!UBERON:0002346;2.41e-14;4!UBERON:0000923;2.41e-14;4!UBERON:0010316;2.41e-14;4!UBERON:0005291;2.41e-14;4!UBERON:0002050;1.15e-11;5!UBERON:0005423;1.15e-11;5!UBERON:0004177;1.38e-11;5!UBERON:0005057;1.38e-11;5!UBERON:0000013;1.95e-11;5!UBERON:0002410;1.95e-11;5!UBERON:0003714;7.27e-08;2!UBERON:0000010;9.64e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,2.76e-14,4;UBERON:0005058,2.76e-14,4;UBERON:0009113,2.76e-14,4;UBERON:0003295,2.76e-14,4;UBERON:0005562,2.76e-14,4;UBERON:0000013,2.17e-11,5;UBERON:0002410,2.17e-11,5;UBERON:0003351,7.76e-10,6;UBERON:0004177,1.47e-08,7;UBERON:0005057,1.47e-08,7;UBERON:0003714,6.58e-08,2 | |||
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| ||
|short_description=p4@ENST00000429947 | |short_description=p4@ENST00000429947 | ||
}} | }} |
Latest revision as of 08:46, 29 July 2015
Short description: | p4@ENST00000429947 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_ENST00000429947_5end |
Coexpression cluster: | C2695_neuroectodermal_Dendritic_thymus_acute_granulocyte_CD19_neuroblastoma |
Association with transcript: | 19bp_to_ENST00000429947_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
plasmacytoid dendritic cell | 4.62e-19 | 3 |
B cell | 2.68e-15 | 14 |
lymphocyte of B lineage | 1.25e-13 | 24 |
pro-B cell | 1.25e-13 | 24 |
Ontology term | p-value | n |
---|---|---|
thymus | 2.76e-14 | 4 |
hemolymphoid system gland | 2.76e-14 | 4 |
thymic region | 2.76e-14 | 4 |
pharyngeal gland | 2.76e-14 | 4 |
thymus primordium | 2.76e-14 | 4 |
sympathetic nervous system | 2.17e-11 | 5 |
autonomic nervous system | 2.17e-11 | 5 |
pharyngeal epithelium | 7.76e-10 | 6 |
hemopoietic organ | 1.47e-08 | 7 |
immune organ | 1.47e-08 | 7 |
neural tissue | 6.58e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 1.96e-21 | 10 |
germ cell and embryonal cancer | 6.57e-10 | 22 |
germ cell cancer | 6.57e-10 | 22 |
neuroendocrine tumor | 1.21e-09 | 6 |
peripheral nerve sheath neoplasm | 6.58e-08 | 2 |
neurofibroma | 6.58e-08 | 2 |