FFCP PHASE1:Hg19::chr2:224862960..224863008,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:224862960..224863008,- | |||
|coexpression_cluster_id=C354 | |||
|description=CAGE_peak_at_chr2:224862960..224863008,- | |description=CAGE_peak_at_chr2:224862960..224863008,- | ||
|id=chr2:224862960..224863008,- | |id=chr2:224862960..224863008,- | ||
|ontology_enrichment_celltype=CL:0000055!7.73e-22!180;CL:0000057!2.83e-14!75;CL:0002620!2.64e-09!23 | |ontology_enrichment_celltype=CL:0000055!7.73e-22!180;CL:0000057!2.83e-14!75;CL:0002620!2.64e-09!23 | ||
|ontology_enrichment_celltype_v019=CL:0002620;1.26e-10;23!CL:0000499;2.98e-08;28!CL:0000153;4.39e-08;9!CL:0000447;4.39e-08;9!CL:0000135;1.11e-07;3!CL:0000388;1.11e-07;3!CL:0002579;1.43e-07;3!CL:0002541;1.94e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.49e-14,76;CL:0002620,7.65e-11,23;CL:0000499,4.17e-08,28;CL:0000153,5.82e-08,9;CL:0000447,5.82e-08,9;CL:0000135,1.20e-07,3;CL:0000388,1.20e-07,3;CL:0002579,1.48e-07,3;CL:0002541,1.71e-07,3;CL:0000048,1.73e-07,427;CL:0000136,3.45e-07,15;CL:0000723,3.81e-07,433 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:17;2.62e-09;5!DOID:450;2.62e-09;5!DOID:66;2.62e-09;5!DOID:423;2.62e-09;5!DOID:0080000;2.62e-09;5!DOID:11722;2.62e-09;5!DOID:0060084;1.83e-07;3!DOID:127;1.83e-07;3 | |||
|ontology_enrichment_disease_v019_2=DOID:17,2.60e-09,5;DOID:450,2.60e-09,5;DOID:66,2.60e-09,5;DOID:423,2.60e-09,5;DOID:0080000,2.60e-09,5;DOID:11722,2.60e-09,5;DOID:0060084,1.78e-07,3;DOID:127,1.78e-07,3 | |||
|ontology_enrichment_uberon=UBERON:0002097!1.33e-08!40;UBERON:0002199!1.71e-08!45;UBERON:0002416!1.71e-08!45;UBERON:0003102!2.33e-08!95;UBERON:0000486!3.72e-08!82;UBERON:0000914!2.23e-07!83;UBERON:0002329!2.23e-07!83;UBERON:0003077!2.23e-07!83;UBERON:0003059!2.23e-07!83;UBERON:0007282!2.23e-07!83;UBERON:0009618!2.23e-07!83;UBERON:0007285!2.23e-07!83;UBERON:0004290!9.60e-07!70 | |ontology_enrichment_uberon=UBERON:0002097!1.33e-08!40;UBERON:0002199!1.71e-08!45;UBERON:0002416!1.71e-08!45;UBERON:0003102!2.33e-08!95;UBERON:0000486!3.72e-08!82;UBERON:0000914!2.23e-07!83;UBERON:0002329!2.23e-07!83;UBERON:0003077!2.23e-07!83;UBERON:0003059!2.23e-07!83;UBERON:0007282!2.23e-07!83;UBERON:0009618!2.23e-07!83;UBERON:0007285!2.23e-07!83;UBERON:0004290!9.60e-07!70 | ||
|ontology_enrichment_uberon_v019=UBERON:0004457;4.90e-14;9!UBERON:0000042;4.90e-14;9!UBERON:0003688;3.42e-12;6!UBERON:0002358;3.42e-12;6!UBERON:0003684;3.42e-12;6!UBERON:0001178;3.42e-12;6!UBERON:0002097;1.34e-08;41!UBERON:0007846;1.11e-07;3!UBERON:0000043;1.11e-07;3!UBERON:0007845;1.11e-07;3!UBERON:0003124;1.94e-07;3!UBERON:0000920;1.94e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,2.25e-12,6;UBERON:0002358,2.25e-12,6;UBERON:0003684,2.25e-12,6;UBERON:0001178,2.25e-12,6;UBERON:0004923,1.01e-10,66;UBERON:0004457,3.35e-10,12;UBERON:0000042,3.35e-10,12;UBERON:0002097,4.13e-10,41;UBERON:0002199,9.39e-10,46;UBERON:0002416,9.39e-10,46;UBERON:0007846,1.20e-07,3;UBERON:0000043,1.20e-07,3;UBERON:0007845,1.20e-07,3;UBERON:0000920,1.71e-07,3;UBERON:0004797,7.59e-07,7 | |||
|phase1_expression=1.63510541343501,1.92690471501885,1.40954404095971,4.00293193412522,1.78784437770915,7.85104671690332,2.53299878168311,0,0.261185628199839,0.245733936501509,0,0,0,0.247532705920093,1.65698687863958,0.672325146451775,0,0,0,0,0.204000691244253,0,0,0.136874425072884,0.125542639594803,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,1.0843174571537,0.50133791063589,3.0417768981773,4.7717156823066,14.1124112387764,0,0,0.175669571386252,0.196468613246569,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,14.9091585508596,1.8994576749687,0.926864265692532,10.8997915884549,3.54668382198357,1.12135520028461,0,0.98667019366864,0.311211035399766,0.404132016209064,0.326923806226917,0,0.576175924479999,0,0,0,1.34503812496621,0.23486899728753,0.161872944368132,0.140450806702248,0.61246251376468,0.491337269247072,0.206651562351531,0,0.989067717114227,0,0,0,0,0,0.877955241761676,0.919463387397059,2.25357088359895,0.340296549480063,1.07633781413317,2.13557388818567,1.48352330811693,3.30100205692843,1.75189299705346,1.28820270022815,1.67505170698431,2.36286865137773,0.974370051611986,0.757301322732344,1.38074847963449,0.323292113637624,2.84007674013291,1.91428986632517,0.339121184620975,0.966304265816484,0.545492241181669,1.14721838155602,0.243947412259191,0,0.116193942869518,0.207322110030741,0,0,7.8224766164908,1.28648187638577,1.38134921352481,0,0,0.354920400119532,0.168584690078102,0,0.110293972732394,0,0.474541238222193,0,0.196221465125346,0.38474715694639,0,0,0,0,0,0,0,0,0,0,0.548751427043128,0,0.502644862058154,0.185176890317059,0,1.03993478527958,0,0,0.117408694235822,0.288732895522148,0.462985512576611,0,0,0,0,0,0,0.93733833986777,0,0,0.53735113621709,0.581267877027924,0.766765358330422,0,0,0,0,0,0.126995788584338,0,1.17217447210047,0,1.02827492703324,1.20137223137567,0.285826432630578,0,0,0.07333828582095,2.19761916788222,0,0,0.531876233169741,1.04007436911366,0,0,0.266422179016099,0,0.542621605391443,0,0,0,0,0.301439377059586,1.74306691720059,0.599837947092342,0,0,0,0,0,0,3.76431397335706,6.1642896765115,0.716243852959582,0,0,0,0.128343036279748,0,0,0.773288812777695,0.335032530668698,0.637938751653163,0,0,0,0.49076596687656,1.00034104211935,0.271265023699736,0.207970861530807,2.49800584316026,0.946214490203608,2.22568688486155,0.601892199455438,4.5481500811197,0,0,0.553107505625109,2.17209036170207,0,0,0,0,0.106727557803444,0,0,0.30239029332968,5.95458738765064,0.460385919864187,1.68396056659844,8.84160129864337,4.60536524160033,12.5466058492014,8.90508398669946,0,0.177561725313127,0.164254312027618,0.519254429183621,0.348631135379878,0,3.40860999515584,0.276242966807689,0.34444334449382,1.0925470080403,0.262248829918848,0,0.15403067420883,0,0,0,0,0.170093705276516,0,0,0,0,0.254876273045038,0,0,0,0,0,0.328014645699706,0,0.206082023295445,0.457847324091717,0,0,0,3.21367859688319,0.096670718292122,0.154048617114644,0.15350367472613,0,0,0,0.255679882248303,0.0890320356467374,0.165284915360978,0.384380134730212,0.127612712494584,1.0115778085555,0.929691098594572,4.7221852024596,0.6970372701606,0.308033580176089,0.532306030317022,0,0.9266210955196,2.14687330112987,0,0,0.571890581771475,0,0,0,0,0.179872457583315,0.54907405947211,0.942499218765491,0.202182481573316,1.58510321173008,0,0,2.68084838594413,0,0.272999822815972,0.707027159768564,4.52032466480971,1.10273068709225,1.32687795048244,5.26141062304515,0,0,0.811641507850816,0.6196469961995,0.563391205064483,0.286822704408103,0.392996164052485,1.426684205925,0.354761064070598,12.6664581178598,3.29294892959902,0,0,0.288666338176536,0,1.08890984861323,0.188287601553558,0,3.36942951335251,0.443430153536676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0711418433484141,0,0,0,0.423347165447766,0,0,0,0,0,0,0,0,0,0,0,0,0,0.390776190804081,0,0,0.270455678475983,0,0,0,0.146508179271894,0,0.222886768554957,0,1.67121139316383,0,0,0,0.140669416410513,0.111308705022906,0,0,0,0,0,0,0,1.24415835064723,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,0,0.227586896570999,0,0.472775363535873,0,0,0,0.885741385813839,0.120596438625408,0,0.221158519862449,0.295547618953547,0.219385397153973,0,0,0.153900517007594,0.113942055847001,0,0,0,11.4840417503491,2.65633020865401,28.2508431289876,0,0,0,0,0,0,0,0,0.632994193584081,0,0,0,0,0.0884575645033392,0,0,0,0,0.067401132980677,2.40773294189637,0.468528891450678,0,0,0,0,0,1.22429104652196,0.31593289814244,0,0,0,0.661983911750998,0.313932918407225,0,0,0.138674673013139,0,0,0.0870592065804026,0,0,0,0,0,0.193978032976839,0,0.225980740780532,0,0.397429223405979,0,0,0,0.213452994739353,0,0,0,0,0.14405479798815,0,0,0.135904206073614,0.313808538937,0,0,0.600420288709789,0.273810757783986,0,0.429765441419957,0,1.11712960508902,0,1.43574604915363,0.19967900049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| ||
|short_description=p@chr2:224862960..224863008,- | |short_description=p@chr2:224862960..224863008,- | ||
}} | }} |
Latest revision as of 07:11, 29 July 2015
Short description: | p@chr2:224862960..224863008, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:224862960..224863008, - |
Coexpression cluster: | C354_Fibroblast_Preadipocyte_Chondrocyte_chorionic_tenocyte_Synoviocyte_Smooth |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.49e-14 | 76 |
skin fibroblast | 7.65e-11 | 23 |
stromal cell | 4.17e-08 | 28 |
GAG secreting cell | 5.82e-08 | 9 |
carbohydrate secreting cell | 5.82e-08 | 9 |
fibrocyte | 1.20e-07 | 3 |
tendon cell | 1.20e-07 | 3 |
omentum preadipocyte | 1.48e-07 | 3 |
chorionic membrane mesenchymal stem cell | 1.71e-07 | 3 |
multi fate stem cell | 1.73e-07 | 427 |
fat cell | 3.45e-07 | 15 |
somatic stem cell | 3.81e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
omentum | 2.25e-12 | 6 |
peritoneum | 2.25e-12 | 6 |
abdominal cavity | 2.25e-12 | 6 |
visceral peritoneum | 2.25e-12 | 6 |
organ component layer | 1.01e-10 | 66 |
cavity lining | 3.35e-10 | 12 |
serous membrane | 3.35e-10 | 12 |
skin of body | 4.13e-10 | 41 |
integument | 9.39e-10 | 46 |
integumental system | 9.39e-10 | 46 |
dense regular connective tissue | 1.20e-07 | 3 |
tendon | 1.20e-07 | 3 |
regular connective tissue | 1.20e-07 | 3 |
egg chorion | 1.71e-07 | 3 |
blood vessel layer | 7.59e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 2.60e-09 | 5 |
myotonic disease | 2.60e-09 | 5 |
muscle tissue disease | 2.60e-09 | 5 |
myopathy | 2.60e-09 | 5 |
muscular disease | 2.60e-09 | 5 |
myotonic dystrophy | 2.60e-09 | 5 |
cell type benign neoplasm | 1.78e-07 | 3 |
leiomyoma | 1.78e-07 | 3 |