FFCP PHASE1:Hg19::chr2:224845086..224845116,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:224845086..224845116,- | |||
|coexpression_cluster_id=C354 | |coexpression_cluster_id=C354 | ||
|description=CAGE_peak_at_chr2:224845086..224845116,- | |description=CAGE_peak_at_chr2:224845086..224845116,- | ||
|id=chr2:224845086..224845116,- | |id=chr2:224845086..224845116,- | ||
|ontology_enrichment_celltype=CL:0002541;6.41e-12;3!CL:0002579;7.02e-12;3!CL:0000153;4.99e-10;9!CL:0000447;4.99e-10;9!CL:0000499;5.37e-09;28!CL:1000306;1.19e-08;4!CL:0002547;1.19e-08;4!CL:0000056;2.98e-08;4!CL:0000327;3.03e-08;15!CL:0002334;1.87e-07;12 | |ontology_enrichment_celltype=CL:0000055!4.93e-14!180;CL:0000057!2.57e-13!75;CL:0002620!4.49e-11!23 | ||
| | |ontology_enrichment_celltype_v019=CL:0002541;6.41e-12;3!CL:0002579;7.02e-12;3!CL:0000153;4.99e-10;9!CL:0000447;4.99e-10;9!CL:0000499;5.37e-09;28!CL:1000306;1.19e-08;4!CL:0002547;1.19e-08;4!CL:0000056;2.98e-08;4!CL:0000327;3.03e-08;15!CL:0002334;1.87e-07;12 | ||
|ontology_enrichment_disease=DOID:0060084;3.10e-11;3!DOID:127;3.10e-11;3!DOID:0060072;1.57e-08;4!DOID:1909;8.58e-08;2!DOID:17;7.26e-07;5!DOID:450;7.26e-07;5!DOID:66;7.26e-07;5!DOID:423;7.26e-07;5!DOID:0080000;7.26e-07;5!DOID:11722;7.26e-07;5 | |ontology_enrichment_celltype_v019_2=CL:0002541,5.40e-12,3;CL:0002579,1.43e-11,3;CL:0000057,1.04e-10,76;CL:0000153,4.98e-10,9;CL:0000447,4.98e-10,9;CL:0000499,6.06e-09,28;CL:1000306,1.62e-08,4;CL:0002547,1.62e-08,4;CL:0000515,1.75e-08,4;CL:0000327,3.07e-08,15;CL:0002334,1.96e-07,12 | ||
|ontology_enrichment_uberon=UBERON:0003124;6.41e-12;3!UBERON:0000920;6.41e-12;3!UBERON:0004457;4.58e-10;9!UBERON:0000042;4.58e-10;9!UBERON:0005631;7.86e-09;10!UBERON:0000158;7.86e-09;10!UBERON:0005406;9.17e-09;2!UBERON:0004797;1.19e-08;4!UBERON:0000415;1.19e-08;4!UBERON:0007240;1.19e-08;4!UBERON:0005742;1.19e-08;4!UBERON:0005734;1.19e-08;4!UBERON:0004664;1.19e-08;4!UBERON:0004663;1.19e-08;4!UBERON:0002097;9.70e-07;41 | |ontology_enrichment_development_v019=CL:0000515;2.98e-08;4 | ||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;3.10e-11;3!DOID:127;3.10e-11;3!DOID:0060072;1.57e-08;4!DOID:1909;8.58e-08;2!DOID:17;7.26e-07;5!DOID:450;7.26e-07;5!DOID:66;7.26e-07;5!DOID:423;7.26e-07;5!DOID:0080000;7.26e-07;5!DOID:11722;7.26e-07;5 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,2.20e-11,3;DOID:127,2.20e-11,3;DOID:0060072,1.22e-08,4;DOID:1909,1.35e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0002097!7.02e-12!40;UBERON:0002199!1.19e-09!45;UBERON:0002416!1.19e-09!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0003124;6.41e-12;3!UBERON:0000920;6.41e-12;3!UBERON:0004457;4.58e-10;9!UBERON:0000042;4.58e-10;9!UBERON:0005631;7.86e-09;10!UBERON:0000158;7.86e-09;10!UBERON:0005406;9.17e-09;2!UBERON:0004797;1.19e-08;4!UBERON:0000415;1.19e-08;4!UBERON:0007240;1.19e-08;4!UBERON:0005742;1.19e-08;4!UBERON:0005734;1.19e-08;4!UBERON:0004664;1.19e-08;4!UBERON:0004663;1.19e-08;4!UBERON:0002097;9.70e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,5.40e-12,3;UBERON:0004923,5.81e-10,66;UBERON:0005406,8.90e-09,2;UBERON:0000415,1.62e-08,4;UBERON:0007240,1.62e-08,4;UBERON:0005742,1.62e-08,4;UBERON:0005734,1.62e-08,4;UBERON:0004664,1.62e-08,4;UBERON:0004663,1.62e-08,4;UBERON:0002097,8.99e-08,41;UBERON:0004457,2.65e-07,12;UBERON:0000042,2.65e-07,12 | |||
|phase1_expression=0.54503513781167,0.856402095563933,0.281908808191942,0,0,6.10636966870258,0,0,0,0,0,0.218441372130172,0,0,1.32558950291166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.722878304769133,0,1.44846518960824,3.9764297352555,8.75942766544745,0,0.221729397462564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.96366342034382,1.13967460498122,0.397227542439656,7.45775213946916,1.41867352879343,0.560677600142307,0,0.49333509683432,0,0.134710672069688,0,0,0,0,0,0,0.298897361103602,0,0.161872944368132,0,0,0.122834317311768,0,0,1.48360157567134,0.910161361938026,0,0,0,0,0,0.30648779579902,0.901428353439581,0,0.358779271377724,1.06778694409284,0.847727604638247,2.40072876867522,1.33968288009971,1.03056216018252,1.67505170698431,0.675105328965065,0.389748020644795,0.504867548488229,0.644349290496095,0.323292113637624,1.42003837006646,0.302256294682921,0.169560592310488,0,0,0,0,0,0,0.207322110030741,0,0,3.12899064659632,1.28648187638577,0,0.464367928031979,0,0,0.168584690078102,0,0,0,0.237270619111097,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0,1.20725313949488,0,0.502644862058154,0.0925884451585296,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0,0,0,0,0,0,0,0.411309970813294,0.300343057843917,0.285826432630578,0,0,0,0.904902010304444,0,0,0.531876233169741,1.04007436911366,0,0,0,0,0,0,0,0,0,0.602878754119172,0,0,0,0,0,0,0,1.42636905040718,1.59259437334337,1.64381058040307,0.179060963239896,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0.36807447515742,0,0.542530047399471,0.207970861530807,0.178428988797162,0.157702415033935,0.35142424497814,0,0,0,0,0.184369168541703,1.21637060255316,0,0,0,0,0,0,0,0,1.73675465473144,0.153461973288062,0.561320188866147,5.38184426873944,1.02341449813341,7.39928037260594,4.45254199334973,0,0,0,0,0.348631135379878,0,0.802025881213139,0,0.229628896329213,0.364182336013434,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0,0,0,1.6068392984416,0.193341436584244,0,0,0,0,0,0,0.0890320356467374,0.330569830721956,0.192190067365106,0.127612712494584,0,0,3.77774816196768,0.6970372701606,0,0,0,0.18532421910392,0.429374660225974,0,0,0,0,0,0,0,0.179872457583315,0,0.471249609382746,0.202182481573316,1.58510321173008,0,0,1.70599442741899,0,0.272999822815972,0.565621727814851,1.13008116620243,1.10273068709225,1.32687795048244,0.438450885253763,0,0,0,0.6196469961995,0,0,0,0,0,4.43326034125095,1.31717957183961,0,0,0,0,0,0.0941438007767792,0.43050537267123,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,2.50634477090067,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4098700508785,0,0,0,0,0,1.67121139316383,0,0,0,0,0.222617410045812,0,0,0,0,0,0,0,0.311039587661807,0,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0.236387681767936,0,0,0,0,0,0,0,0.295547618953547,0,0,0,0,0.113942055847001,0,0,0,5.10401855571071,1.55715908783166,12.7928346244472,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0.19566461893209,0,0,0,0.30607276163049,0,0,0,0,0.330991955875499,0,0,0,0,0,0,0.0870592065804026,0.17472666824203,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0.213452994739353,0,0,0.114536596165916,0,0,0,0.235694034616795,0.135904206073614,0.104602846312333,0,0,0,0,0,1.28929632425987,0,0,0,0.717873024576814,0,0,0,0,2.16179930125442,0,0,0,0,0,0,0,0.136203406111576,0.160753148465019,0.137539436597234,0,0,0,0,0,0.0788057072991982,0.0524545881349981,0.105600336519406,0.896436696664224,0.383830394638891,0,0,0,3.80099721227599,1.72844298240254,1.30634944043764,0,0,0.340776043570843,0.226624183040251,0,0,0,0.52893040697076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.77213635993397,0.244052529803926,0,0,0.221858103073705,0,0,0,1.36484205787483,1.14186133417987,0.235265819698172,0,0,0,0,0,0.378806010550178,0.251567901752575,0,0.228840068396924,0.151230923763239,0.932623203496683,0.73927574994817,0,0,0,1.65882483136342,0.265841714557995,0,0.300515217994437,0.380805212168795,0,0,0,0,0.398095888698616,0,0.343395705182793,0.673498977531838,0,0,0,0.260994291965212,0,0,0,0.179088841081487,0,0.219284049578707,0.353378291891762,0.192914038270915,0,0,0,0.303859956177382,0,0,0,0,0.327609848846413,0,0,0,0,0,0,0.184105950251841,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0.41023272848151,0,0,0,0,0,0.11796972334774,0,0,0,0,0,0,0,0,0,0.163771917510097,0,0,0,0,0.0634158101939068,0,0,0,0,0.127762427639595,0,0,0,0,0.177404740325278,0,0.171488009437418,0.203909198930495,0.0657727735628491,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0.801711364730253,0.207216164163037,0,0,0,0.236664001461131,0.170426809518315,0,0,0.31020638566432,0,0,0,0,0,0,1.1598144313382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86919826156599,0,0,0,0,0.352894871715692,0,0,0,0.143339583151451,0,0,0,0,3.71995018166751,6.00828317220844,0,0,0,0,0.203977659483963,0,0,0,0,0,0,0,0,0,0,0,0,0.0636471582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| ||
|short_description=p@chr2:224845086..224845116,- | |short_description=p@chr2:224845086..224845116,- | ||
}} | }} |
Latest revision as of 07:10, 29 July 2015
Short description: | p@chr2:224845086..224845116, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:224845086..224845116, - |
Coexpression cluster: | C354_Fibroblast_Preadipocyte_Chondrocyte_chorionic_tenocyte_Synoviocyte_Smooth |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 5.40e-12 | 3 |
omentum preadipocyte | 1.43e-11 | 3 |
fibroblast | 1.04e-10 | 76 |
GAG secreting cell | 4.98e-10 | 9 |
carbohydrate secreting cell | 4.98e-10 | 9 |
stromal cell | 6.06e-09 | 28 |
fibroblast of tunica adventitia of artery | 1.62e-08 | 4 |
fibroblast of the aortic adventitia | 1.62e-08 | 4 |
skeletal muscle myoblast | 1.75e-08 | 4 |
extracellular matrix secreting cell | 3.07e-08 | 15 |
preadipocyte | 1.96e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 5.40e-12 | 3 |
organ component layer | 5.81e-10 | 66 |
perirenal fat | 8.90e-09 | 2 |
artery wall | 1.62e-08 | 4 |
tunica adventitia of artery | 1.62e-08 | 4 |
adventitia | 1.62e-08 | 4 |
tunica adventitia of blood vessel | 1.62e-08 | 4 |
aorta tunica adventitia | 1.62e-08 | 4 |
aorta wall | 1.62e-08 | 4 |
skin of body | 8.99e-08 | 41 |
cavity lining | 2.65e-07 | 12 |
serous membrane | 2.65e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 2.20e-11 | 3 |
leiomyoma | 2.20e-11 | 3 |
benign neoplasm | 1.22e-08 | 4 |
melanoma | 1.35e-07 | 2 |