FFCP PHASE1:Hg19::chr2:198380657..198380669,-: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr2:198380657..198380669,- | |||
|description=CAGE_peak_at_chr2:198380657..198380669,- | |||
|id=chr2:198380657..198380669,- | |||
|ontology_enrichment_celltype=CL:0000838!2.52e-13!52;CL:0000542!6.12e-13!53;CL:0000051!6.12e-13!53;CL:0000791!1.93e-12!18;CL:0000789!1.93e-12!18;CL:0002420!1.93e-12!18;CL:0002419!1.93e-12!18;CL:0000790!1.93e-12!18;CL:0000084!1.52e-09!25;CL:0000827!1.52e-09!25;CL:0000625!1.41e-07!11;CL:0000623!8.96e-07!3;CL:0000825!8.96e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000895;5.22e-26;1!CL:0000097;8.97e-21;5!CL:0000163;5.22e-12;9!CL:0000898;1.35e-09;3!CL:0000306;1.64e-07;4!CL:0002222;1.64e-07;4!CL:0002224;1.64e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000810,9.79e-26,1;CL:0000895,9.79e-26,1;CL:0002436,9.79e-26,1;CL:0002427,9.79e-26,1;CL:0002428,9.79e-26,1;CL:0002429,9.79e-26,1;CL:0002433,9.79e-26,1;CL:0002431,9.79e-26,1;CL:0002432,9.79e-26,1;CL:0000097,7.35e-21,5;CL:0002028,7.35e-21,5;CL:0000893,1.37e-13,2;CL:0002489,1.37e-13,2;CL:0000809,1.37e-13,2;CL:0000808,1.37e-13,2;CL:0000894,1.37e-13,2;CL:0000806,1.37e-13,2;CL:0000807,1.37e-13,2;CL:0000805,1.37e-13,2;CL:0002425,1.37e-13,2;CL:0000163,4.67e-12,9;CL:0000898,1.67e-09,3;CL:0000306,1.80e-07,4;CL:0002222,1.80e-07,4;CL:0002224,1.80e-07,4 | |||
|ontology_enrichment_development_v019=CL:0002427;5.22e-26;1!CL:0002425;1.00e-13;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.78e-15!57;UBERON:0005068!1.78e-15!57;UBERON:0006241!1.78e-15!57;UBERON:0007135!1.78e-15!57;UBERON:0002616!2.23e-13!59;UBERON:0002780!1.19e-12!41;UBERON:0001890!1.19e-12!41;UBERON:0006240!1.19e-12!41;UBERON:0000955!2.59e-12!69;UBERON:0006238!2.59e-12!69;UBERON:0003080!3.22e-12!42;UBERON:0002346!4.21e-12!90;UBERON:0007023!4.28e-12!115;UBERON:0000073!1.44e-11!94;UBERON:0001016!1.44e-11!94;UBERON:0003075!3.74e-11!86;UBERON:0007284!3.74e-11!86;UBERON:0001017!5.32e-11!82;UBERON:0005743!6.53e-11!86;UBERON:0003056!1.68e-10!61;UBERON:0000153!3.63e-09!129;UBERON:0007811!3.63e-09!129;UBERON:0001893!1.78e-08!34;UBERON:0000033!7.48e-08!123;UBERON:0002791!1.07e-07!33;UBERON:0002020!1.61e-07!34;UBERON:0003528!1.61e-07!34;UBERON:0001869!6.12e-07!32 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.00e-13;2!UBERON:0005058;1.00e-13;2!UBERON:0009113;1.00e-13;2!UBERON:0010077;1.64e-07;4!UBERON:0005389;1.64e-07;4!UBERON:0000484;1.64e-07;4!UBERON:0000965;1.64e-07;4!UBERON:0001803;1.64e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.11e-25,4;UBERON:0005058,1.11e-25,4;UBERON:0009113,1.11e-25,4;UBERON:0003295,1.11e-25,4;UBERON:0005562,1.11e-25,4;UBERON:0003351,1.71e-17,6;UBERON:0004177,3.79e-15,7;UBERON:0005057,3.79e-15,7;UBERON:0000974,6.61e-11,10;UBERON:0003408,6.61e-11,10;UBERON:0001042,6.61e-11,10;UBERON:0009145,6.61e-11,10;UBERON:0006562,5.29e-10,11;UBERON:0009722,5.29e-10,11;UBERON:0007690,5.29e-10,11;UBERON:0010077,1.80e-07,4;UBERON:0005389,1.80e-07,4;UBERON:0000484,1.80e-07,4;UBERON:0002546,1.80e-07,4;UBERON:0000965,1.80e-07,4;UBERON:0001803,1.80e-07,4;UBERON:0003073,1.80e-07,4;UBERON:0005426,1.80e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246242116153576,0,0,0,0,0.125542639594803,0,0.0821005894499457,0.0787107813136792,0,0,0.154816123316076,0,0.30120591877825,0,0,0.142169232487422,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0.426224750532694,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,1.1384259382189,0.587237189370939,0,0,0,0,0.393419540227666,0,0,0.167186495390678,0.651844533267181,0,0,0.111410456885174,0.294605907474837,0,0.270803863765016,0,0,0,0,0,0,0,0,0,1.14966148080576,0.34362744548263,0.506039384039006,0,0.651083453856419,0.950452044448374,0.150575119077773,0.127986611154418,0,0,0,0.80642697289893,1.33720097891754,0.579297615531196,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0.130979075497713,0,0,0,0,0,0.238490624305342,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4512968087854,0.720599767084807,1.38866676769018,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0.591092280605782,0.646882724578552,0.77005821767849,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281695602532241,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0.648473311192717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0.223676107892416,0,0,0,0,0,0,0,0,0,0,0.222886768554957,0,0,0,0,0,0.140669416410513,0,0,0,0.398495976502139,0.276283915531148,0,0,0,0,0,0,0,0,0,0,0,0,1.99613798001194,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0.110579259931225,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0.210998064528027,0,0,0,0,0,0,0,0,0,0.134802265961354,0,0.702793337176017,0,0,0.242780379534093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0.0787831823072236,0,0,0,0.0846733320657845,0.795229689809303,0,0,0,0,0,0,0.0607495566580247,0,0,0.157363764404994,0,0,0,0,0,0,0,0,0,1.19730191562487,0,0,0,0,0,0,0.39669780522807,0,0,0.320362237703084,0,0,0,0.197611631897944,0,0,0,0.2506898940227,0,0,0,0,0,0.1251909307065,0,0.332787154610557,0.248385611765534,0,0,0,0,0,0,0.144921028610825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0.157265941855896,0.218419276384028,0,0.212574920101683,0,0,0,0.788617450012533,0,0,0,0.128458450192919,0,0.638535436228605,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0.163771917510097,0,0.135075169236789,0,0.206686796501184,0,0,0,0,0.175871244359621,0,0.535701835878287,0.336283722218824,0,0.227662191351298,0,0.230467975111559,0,0.0679697329768317,0.0657727735628491,0,0,0.078493092850514,0.157115589916002,0,0,0,0,0.0714765441766563,0.158013611732727,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109940516745429,0,0,0,0,0,0,0,0.297046400327086,0,0,0,0.515663103788617,0,0,0,0,0,0.458729283404541,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0.310298987585686,0,0,0,1.86224142887574,0,0.0636471582781649,0,0,0.342233301085281,0.202056159043763,0.143444410785353,0,0,0.106727345877715,0,0.0898252021065869,0,0.122241444182866,0,0,0.201273793591026,0 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| ||
|short_description=p@chr2:198380657..198380669,- | |||
}} | }} |
Latest revision as of 04:43, 29 July 2015
Short description: | p@chr2:198380657..198380669, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:198380657..198380669, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta thymocyte | 9.79e-26 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 9.79e-26 | 1 |
mature CD4 single-positive thymocyte | 9.79e-26 | 1 |
resting double-positive thymocyte | 9.79e-26 | 1 |
double-positive blast | 9.79e-26 | 1 |
CD69-positive double-positive thymocyte | 9.79e-26 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 9.79e-26 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 9.79e-26 | 1 |
CD24-positive, CD4 single-positive thymocyte | 9.79e-26 | 1 |
mast cell | 7.35e-21 | 5 |
basophil mast progenitor cell | 7.35e-21 | 5 |
thymocyte | 1.37e-13 | 2 |
double negative thymocyte | 1.37e-13 | 2 |
double-positive, alpha-beta thymocyte | 1.37e-13 | 2 |
DN4 thymocyte | 1.37e-13 | 2 |
DN1 thymic pro-T cell | 1.37e-13 | 2 |
DN2 thymocyte | 1.37e-13 | 2 |
DN3 thymocyte | 1.37e-13 | 2 |
immature single positive thymocyte | 1.37e-13 | 2 |
early T lineage precursor | 1.37e-13 | 2 |
endocrine cell | 4.67e-12 | 9 |
naive T cell | 1.67e-09 | 3 |
crystallin accumulating cell | 1.80e-07 | 4 |
vertebrate lens cell | 1.80e-07 | 4 |
lens epithelial cell | 1.80e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.11e-25 | 4 |
hemolymphoid system gland | 1.11e-25 | 4 |
thymic region | 1.11e-25 | 4 |
pharyngeal gland | 1.11e-25 | 4 |
thymus primordium | 1.11e-25 | 4 |
pharyngeal epithelium | 1.71e-17 | 6 |
hemopoietic organ | 3.79e-15 | 7 |
immune organ | 3.79e-15 | 7 |
neck | 6.61e-11 | 10 |
gland of gut | 6.61e-11 | 10 |
chordate pharynx | 6.61e-11 | 10 |
pharyngeal region of foregut | 6.61e-11 | 10 |
pharynx | 5.29e-10 | 11 |
entire pharyngeal arch endoderm | 5.29e-10 | 11 |
early pharyngeal endoderm | 5.29e-10 | 11 |
cuboidal epithelium | 1.80e-07 | 4 |
transparent eye structure | 1.80e-07 | 4 |
simple cuboidal epithelium | 1.80e-07 | 4 |
cranial placode | 1.80e-07 | 4 |
lens of camera-type eye | 1.80e-07 | 4 |
epithelium of lens | 1.80e-07 | 4 |
lens placode | 1.80e-07 | 4 |
lens vesicle | 1.80e-07 | 4 |