FFCP PHASE1:Hg19::chr2:198380657..198380669,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:198380657..198380669,- | |||
|description=CAGE_peak_at_chr2:198380657..198380669,- | |description=CAGE_peak_at_chr2:198380657..198380669,- | ||
|id=chr2:198380657..198380669,- | |id=chr2:198380657..198380669,- | ||
|ontology_enrichment_celltype=CL:0000838!2.52e-13!52;CL:0000542!6.12e-13!53;CL:0000051!6.12e-13!53;CL:0000791!1.93e-12!18;CL:0000789!1.93e-12!18;CL:0002420!1.93e-12!18;CL:0002419!1.93e-12!18;CL:0000790!1.93e-12!18;CL:0000084!1.52e-09!25;CL:0000827!1.52e-09!25;CL:0000625!1.41e-07!11;CL:0000623!8.96e-07!3;CL:0000825!8.96e-07!3 | |ontology_enrichment_celltype=CL:0000838!2.52e-13!52;CL:0000542!6.12e-13!53;CL:0000051!6.12e-13!53;CL:0000791!1.93e-12!18;CL:0000789!1.93e-12!18;CL:0002420!1.93e-12!18;CL:0002419!1.93e-12!18;CL:0000790!1.93e-12!18;CL:0000084!1.52e-09!25;CL:0000827!1.52e-09!25;CL:0000625!1.41e-07!11;CL:0000623!8.96e-07!3;CL:0000825!8.96e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000895;5.22e-26;1!CL:0000097;8.97e-21;5!CL:0000163;5.22e-12;9!CL:0000898;1.35e-09;3!CL:0000306;1.64e-07;4!CL:0002222;1.64e-07;4!CL:0002224;1.64e-07;4 | |ontology_enrichment_celltype_v019=CL:0000895;5.22e-26;1!CL:0000097;8.97e-21;5!CL:0000163;5.22e-12;9!CL:0000898;1.35e-09;3!CL:0000306;1.64e-07;4!CL:0002222;1.64e-07;4!CL:0002224;1.64e-07;4 | ||
|ontology_enrichment_celltype_v019_2=CL:0000810,9.79e-26,1;CL:0000895,9.79e-26,1;CL:0002436,9.79e-26,1;CL:0002427,9.79e-26,1;CL:0002428,9.79e-26,1;CL:0002429,9.79e-26,1;CL:0002433,9.79e-26,1;CL:0002431,9.79e-26,1;CL:0002432,9.79e-26,1;CL:0000097,7.35e-21,5;CL:0002028,7.35e-21,5;CL:0000893,1.37e-13,2;CL:0002489,1.37e-13,2;CL:0000809,1.37e-13,2;CL:0000808,1.37e-13,2;CL:0000894,1.37e-13,2;CL:0000806,1.37e-13,2;CL:0000807,1.37e-13,2;CL:0000805,1.37e-13,2;CL:0002425,1.37e-13,2;CL:0000163,4.67e-12,9;CL:0000898,1.67e-09,3;CL:0000306,1.80e-07,4;CL:0002222,1.80e-07,4;CL:0002224,1.80e-07,4 | |||
|ontology_enrichment_development_v019=CL:0002427;5.22e-26;1!CL:0002425;1.00e-13;2 | |ontology_enrichment_development_v019=CL:0002427;5.22e-26;1!CL:0002425;1.00e-13;2 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.78e-15!57;UBERON:0005068!1.78e-15!57;UBERON:0006241!1.78e-15!57;UBERON:0007135!1.78e-15!57;UBERON:0002616!2.23e-13!59;UBERON:0002780!1.19e-12!41;UBERON:0001890!1.19e-12!41;UBERON:0006240!1.19e-12!41;UBERON:0000955!2.59e-12!69;UBERON:0006238!2.59e-12!69;UBERON:0003080!3.22e-12!42;UBERON:0002346!4.21e-12!90;UBERON:0007023!4.28e-12!115;UBERON:0000073!1.44e-11!94;UBERON:0001016!1.44e-11!94;UBERON:0003075!3.74e-11!86;UBERON:0007284!3.74e-11!86;UBERON:0001017!5.32e-11!82;UBERON:0005743!6.53e-11!86;UBERON:0003056!1.68e-10!61;UBERON:0000153!3.63e-09!129;UBERON:0007811!3.63e-09!129;UBERON:0001893!1.78e-08!34;UBERON:0000033!7.48e-08!123;UBERON:0002791!1.07e-07!33;UBERON:0002020!1.61e-07!34;UBERON:0003528!1.61e-07!34;UBERON:0001869!6.12e-07!32 | |ontology_enrichment_uberon=UBERON:0001049!1.78e-15!57;UBERON:0005068!1.78e-15!57;UBERON:0006241!1.78e-15!57;UBERON:0007135!1.78e-15!57;UBERON:0002616!2.23e-13!59;UBERON:0002780!1.19e-12!41;UBERON:0001890!1.19e-12!41;UBERON:0006240!1.19e-12!41;UBERON:0000955!2.59e-12!69;UBERON:0006238!2.59e-12!69;UBERON:0003080!3.22e-12!42;UBERON:0002346!4.21e-12!90;UBERON:0007023!4.28e-12!115;UBERON:0000073!1.44e-11!94;UBERON:0001016!1.44e-11!94;UBERON:0003075!3.74e-11!86;UBERON:0007284!3.74e-11!86;UBERON:0001017!5.32e-11!82;UBERON:0005743!6.53e-11!86;UBERON:0003056!1.68e-10!61;UBERON:0000153!3.63e-09!129;UBERON:0007811!3.63e-09!129;UBERON:0001893!1.78e-08!34;UBERON:0000033!7.48e-08!123;UBERON:0002791!1.07e-07!33;UBERON:0002020!1.61e-07!34;UBERON:0003528!1.61e-07!34;UBERON:0001869!6.12e-07!32 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;1.00e-13;2!UBERON:0005058;1.00e-13;2!UBERON:0009113;1.00e-13;2!UBERON:0010077;1.64e-07;4!UBERON:0005389;1.64e-07;4!UBERON:0000484;1.64e-07;4!UBERON:0000965;1.64e-07;4!UBERON:0001803;1.64e-07;4 | |ontology_enrichment_uberon_v019=UBERON:0002370;1.00e-13;2!UBERON:0005058;1.00e-13;2!UBERON:0009113;1.00e-13;2!UBERON:0010077;1.64e-07;4!UBERON:0005389;1.64e-07;4!UBERON:0000484;1.64e-07;4!UBERON:0000965;1.64e-07;4!UBERON:0001803;1.64e-07;4 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.11e-25,4;UBERON:0005058,1.11e-25,4;UBERON:0009113,1.11e-25,4;UBERON:0003295,1.11e-25,4;UBERON:0005562,1.11e-25,4;UBERON:0003351,1.71e-17,6;UBERON:0004177,3.79e-15,7;UBERON:0005057,3.79e-15,7;UBERON:0000974,6.61e-11,10;UBERON:0003408,6.61e-11,10;UBERON:0001042,6.61e-11,10;UBERON:0009145,6.61e-11,10;UBERON:0006562,5.29e-10,11;UBERON:0009722,5.29e-10,11;UBERON:0007690,5.29e-10,11;UBERON:0010077,1.80e-07,4;UBERON:0005389,1.80e-07,4;UBERON:0000484,1.80e-07,4;UBERON:0002546,1.80e-07,4;UBERON:0000965,1.80e-07,4;UBERON:0001803,1.80e-07,4;UBERON:0003073,1.80e-07,4;UBERON:0005426,1.80e-07,4 | |||
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| ||
|short_description=p@chr2:198380657..198380669,- | |short_description=p@chr2:198380657..198380669,- | ||
}} | }} |
Latest revision as of 04:43, 29 July 2015
Short description: | p@chr2:198380657..198380669, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:198380657..198380669, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD4-positive, alpha-beta thymocyte | 9.79e-26 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 9.79e-26 | 1 |
mature CD4 single-positive thymocyte | 9.79e-26 | 1 |
resting double-positive thymocyte | 9.79e-26 | 1 |
double-positive blast | 9.79e-26 | 1 |
CD69-positive double-positive thymocyte | 9.79e-26 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 9.79e-26 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 9.79e-26 | 1 |
CD24-positive, CD4 single-positive thymocyte | 9.79e-26 | 1 |
mast cell | 7.35e-21 | 5 |
basophil mast progenitor cell | 7.35e-21 | 5 |
thymocyte | 1.37e-13 | 2 |
double negative thymocyte | 1.37e-13 | 2 |
double-positive, alpha-beta thymocyte | 1.37e-13 | 2 |
DN4 thymocyte | 1.37e-13 | 2 |
DN1 thymic pro-T cell | 1.37e-13 | 2 |
DN2 thymocyte | 1.37e-13 | 2 |
DN3 thymocyte | 1.37e-13 | 2 |
immature single positive thymocyte | 1.37e-13 | 2 |
early T lineage precursor | 1.37e-13 | 2 |
endocrine cell | 4.67e-12 | 9 |
naive T cell | 1.67e-09 | 3 |
crystallin accumulating cell | 1.80e-07 | 4 |
vertebrate lens cell | 1.80e-07 | 4 |
lens epithelial cell | 1.80e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.11e-25 | 4 |
hemolymphoid system gland | 1.11e-25 | 4 |
thymic region | 1.11e-25 | 4 |
pharyngeal gland | 1.11e-25 | 4 |
thymus primordium | 1.11e-25 | 4 |
pharyngeal epithelium | 1.71e-17 | 6 |
hemopoietic organ | 3.79e-15 | 7 |
immune organ | 3.79e-15 | 7 |
neck | 6.61e-11 | 10 |
gland of gut | 6.61e-11 | 10 |
chordate pharynx | 6.61e-11 | 10 |
pharyngeal region of foregut | 6.61e-11 | 10 |
pharynx | 5.29e-10 | 11 |
entire pharyngeal arch endoderm | 5.29e-10 | 11 |
early pharyngeal endoderm | 5.29e-10 | 11 |
cuboidal epithelium | 1.80e-07 | 4 |
transparent eye structure | 1.80e-07 | 4 |
simple cuboidal epithelium | 1.80e-07 | 4 |
cranial placode | 1.80e-07 | 4 |
lens of camera-type eye | 1.80e-07 | 4 |
epithelium of lens | 1.80e-07 | 4 |
lens placode | 1.80e-07 | 4 |
lens vesicle | 1.80e-07 | 4 |