FFCP PHASE1:Hg19::chr2:177042798..177042859,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000447538,ENST00000456876,ENST00000546798,ENST00000552156,uc002uku.2_5end | |association_with_transcript=0bp_to_ENST00000447538,ENST00000456876,ENST00000546798,ENST00000552156,uc002uku.2_5end | ||
|cluster_id=chr2:177042798..177042859,- | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_1_at_ENST00000447538_5end,CAGE_peak_1_at_ENST00000456876_5end,CAGE_peak_1_at_ENST00000546798_5end,CAGE_peak_1_at_ENST00000552156_5end,CAGE_peak_1_at_uc002uku.2_5end | |description=CAGE_peak_1_at_ENST00000447538_5end,CAGE_peak_1_at_ENST00000456876_5end,CAGE_peak_1_at_ENST00000546798_5end,CAGE_peak_1_at_ENST00000552156_5end,CAGE_peak_1_at_uc002uku.2_5end | ||
|id=chr2:177042798..177042859,- | |id=chr2:177042798..177042859,- | ||
|ontology_enrichment_celltype=CL:0002139!2.00e-08!24;CL:0000115!2.75e-07!35 | |ontology_enrichment_celltype=CL:0002139!2.00e-08!24;CL:0000115!2.75e-07!35 | ||
|ontology_enrichment_celltype_v019=CL:0000123;8.64e-16;2!CL:0000242;8.64e-16;2!CL:0002535;2.16e-15;2!CL:1001319;1.06e-08;1!CL:1000600;1.06e-08;1!CL:0000313;2.46e-08;1!CL:0000244;4.54e-08;4!CL:0000731;4.54e-08;4!CL:0000312;7.93e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,8.04e-16,2;CL:0002535,1.45e-15,2;CL:1001319,1.10e-08,1;CL:1000600,1.10e-08,1;CL:0000313,1.84e-08,1;CL:0000244,4.23e-08,4;CL:0000731,4.23e-08,4;CL:0000066,1.79e-07,253;CL:0000312,7.71e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0009117;3.46e-07;10!UBERON:0005564;3.46e-07;10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:4362;1.99e-13;5!DOID:1749;1.58e-08;14!DOID:3151;2.46e-08;1!DOID:2152;2.46e-08;1!DOID:3149;2.46e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4362,1.17e-13,5;DOID:305,2.70e-12,106;DOID:0050687,3.55e-11,143;DOID:1749,1.71e-08,14;DOID:2152,1.84e-08,1;DOID:3151,4.07e-08,1;DOID:3149,4.07e-08,1;DOID:162,2.77e-07,235;DOID:14566,4.65e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0006554!3.02e-07!44;UBERON:0001008!5.72e-07!45;UBERON:0003887!7.50e-07!21 | |ontology_enrichment_uberon=UBERON:0006554!3.02e-07!44;UBERON:0001008!5.72e-07!45;UBERON:0003887!7.50e-07!21 | ||
|ontology_enrichment_uberon_v019=UBERON:0005910;2.78e-19;6!UBERON:0006955;2.16e-15;2!UBERON:0004801;2.16e-15;2!UBERON:0000365;1.47e-13;5!UBERON:0000002;2.80e-11;6!UBERON:0001560;2.80e-11;6!UBERON:0000486;9.82e-10;12!UBERON:0004645;1.06e-08;1!UBERON:0001256;1.06e-08;1!UBERON:0001259;1.06e-08;1!UBERON:0001301;1.27e-08;1!UBERON:0000997;2.46e-08;1!UBERON:0004911;2.46e-08;1!UBERON:0005056;2.46e-08;1!UBERON:0004176;2.46e-08;1!UBERON:0003133;3.25e-08;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005910,2.72e-19,6;UBERON:0006955,1.45e-15,2;UBERON:0004801,1.45e-15,2;UBERON:0000365,1.38e-13,5;UBERON:0000002,1.80e-11,6;UBERON:0001560,1.80e-11,6;UBERON:0004645,1.10e-08,1;UBERON:0001256,1.10e-08,1;UBERON:0001259,1.10e-08,1;UBERON:0001301,1.37e-08,1;UBERON:0003133,1.46e-08,48;UBERON:0004911,1.84e-08,1;UBERON:0000997,3.53e-08,1;UBERON:0005056,3.53e-08,1;UBERON:0005156,9.29e-07,59;UBERON:0000990,9.29e-07,59 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0,0,34.8404340823916,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0.275118041940067,0.626984899610432,0,0.71153252537342,0.66944122552934,0.402829317109147,0,0.732186172644509,1.10298924103761,0,0.982297011124877,0.673588117878509,0.112611480483322,0,0,0.366403487860815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0.117434498643765,0.323745888736263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0,0,0.257640540045629,0,0,0.194874010322397,0,0,0,0,0.302256294682921,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0.433099343283221,0,0.570762456703795,0.790204397959275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0.325736184293735,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0.215627574859517,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0.0821271560138091,0,0,0.362578348774867,0,0,0,0,0.131124414959424,0,1.30926073077505,1.56869953835371,0,0.316654886678627,0,0.170093705276516,0.215915916102139,0,0,0.501689773854853,0.509752546090077,0,0.447749509444357,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0.096670718292122,0.462145851343933,0,0.137836572484531,0.322260734604821,0.145016693914229,0.426133137080504,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379473173765715,0.349934720244983,0,0,0,0.188287601553558,2.15252686335615,0,1.33029046061003,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0.159426272728822,0,0,0,0,0,0,0.156679895773023,0,0.338583555603207,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,1.51159648712566,0,0,0,0,0,0.511572370226872,0,0,0,0,0.185536196323703,0,0,0.262379999988587,0,0,0,1.41832609060762,4.13692047889758,0.583209226766509,0.173624994933292,0,0,0,0,0,0,0,0.83654246567162,0,0,0,0.0897576444097721,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,1.14262965711403,0,0,0.995261931078505,0.0884575645033392,0.611030144933625,0.593042257361244,0.494255755786011,0.417687798021821,0.67401132980677,0.802577647298789,0,0,0,0,0,0,0,0,0,0.103688191397247,0,0,0,0,0.284609546029793,0,0,1.07791637155815,4.70119715534174,2.09672001890436,0,0,0,0.0821154570532092,0,0,0,0,0.397429223405979,0,0,0,0,0,0,0,0,0,0,0.942776138467182,0.407712618220842,0,0,0,0,0.273810757783986,0,0,0,0,0,0,0.199679000498991,0,0,0,0,1.16495949527454,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,1.0063040627978,0.157611414598396,0.944182586429966,0,0.179287339332845,0.959575986597226,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0.387848869084652,0,0,0,0,0,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0,0.1251909307065,0,0.110929051536852,0.372578417648301,0,0,0,0.285465333544967,0,9.36669811613763,2.3187364577732,0,0,0,0,0,0,0,0,0,0,0,0,0.310525913752519,0,0.265841714557995,0,0.150257608997218,0,0,0,0,0,0,0,0.343395705182793,0,0,0,0,0,0.226705925512272,0,0,0,0,0.877136198314828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0.314531883711793,1.31051565830417,0,0,0,0,0,0.315446980005013,0,0,0,0.0642292250964595,0,0.159633859057151,0,0,0,0,0,5.79071539156051,0,0,0.231051332300676,0,0,0,0.225630985047772,0,0,0,0,0,0.135075169236789,0,0,0,0,0,0,0,1.02209942111676,0,0,0,0,0,0,0,0.0679697329768317,0.0657727735628491,0,0,0.156986185701028,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.846774100381858,0,0,0.955538938977433,1.4541206133713,0,0,0,0,0,0,1.87151570769685,0,0,0.11294608203896,0,8.45391923973372,0.0771741581079447,0,0.470317296361523,0,0,0,0,0,0,0.0939839179798536,0.193373663920732,0,0,3.88184358887261,0,0,0,0.286679166302903,0,0,0,0,0,0,0,0,0,0.253397002022874,0,0,0.18378979906969,0,75.5513621235847,119.244037919499,0,0.103432995861895,0,0,0,0,0.224263725161227,0.0636471582781649,0,0.217716747896961,0,0,0,0,3.66314708749385,1.17400080465487,0,0,0,0.244482888365733,0,0,0.201273793591026,0 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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0,0.344745680736619,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0,0,34.8404340823916,0,0,0,0,0,0,0,0,0,0,0,0,0.419499436209906,0.275118041940067,0.626984899610432,0,0.71153252537342,0.66944122552934,0.402829317109147,0,0.732186172644509,1.10298924103761,0,0.982297011124877,0.673588117878509,0.112611480483322,0,0,0.366403487860815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0.117434498643765,0.323745888736263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0,0,0.257640540045629,0,0,0.194874010322397,0,0,0,0,0.302256294682921,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0.433099343283221,0,0.570762456703795,0.790204397959275,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0.325736184293735,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0.215627574859517,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0.0821271560138091,0,0,0.362578348774867,0,0,0,0,0.131124414959424,0,1.30926073077505,1.56869953835371,0,0.316654886678627,0,0.170093705276516,0.215915916102139,0,0,0.501689773854853,0.509752546090077,0,0.447749509444357,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0.096670718292122,0.462145851343933,0,0.137836572484531,0.322260734604821,0.145016693914229,0.426133137080504,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379473173765715,0.349934720244983,0,0,0,0.188287601553558,2.15252686335615,0,1.33029046061003,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0.159426272728822,0,0,0,0,0,0,0.156679895773023,0,0.338583555603207,0,0.201799707191048,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,1.51159648712566,0,0,0,0,0,0.511572370226872,0,0,0,0,0.185536196323703,0,0,0.262379999988587,0,0,0,1.41832609060762,4.13692047889758,0.583209226766509,0.173624994933292,0,0,0,0,0,0,0,0.83654246567162,0,0,0,0.0897576444097721,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,1.14262965711403,0,0,0.995261931078505,0.0884575645033392,0.611030144933625,0.593042257361244,0.494255755786011,0.417687798021821,0.67401132980677,0.802577647298789,0,0,0,0,0,0,0,0,0,0.103688191397247,0,0,0,0,0.284609546029793,0,0,1.07791637155815,4.70119715534174,2.09672001890436,0,0,0,0.0821154570532092,0,0,0,0,0.397429223405979,0,0,0,0,0,0,0,0,0,0,0.942776138467182,0.407712618220842,0,0,0,0,0.273810757783986,0,0,0,0,0,0,0.199679000498991,0,0,0,0,1.16495949527454,0,0,0,0,0,0,0,0,0.137539436597234,0,0,0,0,1.0063040627978,0.157611414598396,0.944182586429966,0,0.179287339332845,0.959575986597226,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0.387848869084652,0,0,0,0,0,0,0,0,0.121792598380896,0,0,0,0,0,0,0,0,0.1251909307065,0,0.110929051536852,0.372578417648301,0,0,0,0.285465333544967,0,9.36669811613763,2.3187364577732,0,0,0,0,0,0,0,0,0,0,0,0,0.310525913752519,0,0.265841714557995,0,0.150257608997218,0,0,0,0,0,0,0,0.343395705182793,0,0,0,0,0,0.226705925512272,0,0,0,0,0.877136198314828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0.314531883711793,1.31051565830417,0,0,0,0,0,0.315446980005013,0,0,0,0.0642292250964595,0,0.159633859057151,0,0,0,0,0,5.79071539156051,0,0,0.231051332300676,0,0,0,0.225630985047772,0,0,0,0,0,0.135075169236789,0,0,0,0,0,0,0,1.02209942111676,0,0,0,0,0,0,0,0.0679697329768317,0.0657727735628491,0,0,0.156986185701028,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.846774100381858,0,0,0.955538938977433,1.4541206133713,0,0,0,0,0,0,1.87151570769685,0,0,0.11294608203896,0,8.45391923973372,0.0771741581079447,0,0.470317296361523,0,0,0,0,0,0,0.0939839179798536,0.193373663920732,0,0,3.88184358887261,0,0,0,0.286679166302903,0,0,0,0,0,0,0,0,0,0.253397002022874,0,0,0.18378979906969,0,75.5513621235847,119.244037919499,0,0.103432995861895,0,0,0,0,0.224263725161227,0.0636471582781649,0,0.217716747896961,0,0,0,0,3.66314708749385,1.17400080465487,0,0,0,0.244482888365733,0,0,0.201273793591026,0 | ||
|short_description=p1@ENST00000447538,p1@ENST00000456876,p1@ENST00000546798,p1@ENST00000552156,p1@uc002uku.2 | |short_description=p1@ENST00000447538,p1@ENST00000456876,p1@ENST00000546798,p1@ENST00000552156,p1@uc002uku.2 | ||
}} | }} |
Latest revision as of 02:48, 29 July 2015
Short description: | p1@ENST00000447538, p1@ENST00000456876, p1@ENST00000546798, p1@ENST00000552156, p1@uc002uku.2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000447538_5end, CAGE_peak_1_at_ENST00000456876_5end, CAGE_peak_1_at_ENST00000546798_5end, CAGE_peak_1_at_ENST00000552156_5end, CAGE_peak_1_at_uc002uku.2_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000447538, ENST00000456876, ENST00000546798, ENST00000552156, uc002uku.2_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 8.04e-16 | 2 |
epithelial cell of cervix | 1.45e-15 | 2 |
bladder cell | 1.10e-08 | 1 |
lower urinary tract cell | 1.10e-08 | 1 |
serous secreting cell | 1.84e-08 | 1 |
transitional epithelial cell | 4.23e-08 | 4 |
urothelial cell | 4.23e-08 | 4 |
epithelial cell | 1.79e-07 | 253 |
keratinocyte | 7.71e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
transitional epithelium | 2.72e-19 | 6 |
uterine epithelium | 1.45e-15 | 2 |
cervix epithelium | 1.45e-15 | 2 |
urothelium | 1.38e-13 | 5 |
uterine cervix | 1.80e-11 | 6 |
neck of organ | 1.80e-11 | 6 |
urinary bladder urothelium | 1.10e-08 | 1 |
wall of urinary bladder | 1.10e-08 | 1 |
mucosa of urinary bladder | 1.10e-08 | 1 |
epididymis | 1.37e-08 | 1 |
reproductive organ | 1.46e-08 | 48 |
epithelium of female gonad | 1.84e-08 | 1 |
mammalian vulva | 3.53e-08 | 1 |
external female genitalia | 3.53e-08 | 1 |
reproductive structure | 9.29e-07 | 59 |
reproductive system | 9.29e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
cervical cancer | 1.17e-13 | 5 |
carcinoma | 2.70e-12 | 106 |
cell type cancer | 3.55e-11 | 143 |
squamous cell carcinoma | 1.71e-08 | 14 |
ovary epithelial cancer | 1.84e-08 | 1 |
skin squamous cell carcinoma | 4.07e-08 | 1 |
keratoacanthoma | 4.07e-08 | 1 |
cancer | 2.77e-07 | 235 |
disease of cellular proliferation | 4.65e-07 | 239 |