FFCP PHASE1:Hg19::chr2:177042798..177042859,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000447538,ENST00000456876,ENST00000546798,ENST00000552156,uc002uku.2_5end | |association_with_transcript=0bp_to_ENST00000447538,ENST00000456876,ENST00000546798,ENST00000552156,uc002uku.2_5end | ||
|cluster_id=chr2:177042798..177042859,- | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_1_at_ENST00000447538_5end,CAGE_peak_1_at_ENST00000456876_5end,CAGE_peak_1_at_ENST00000546798_5end,CAGE_peak_1_at_ENST00000552156_5end,CAGE_peak_1_at_uc002uku.2_5end | |description=CAGE_peak_1_at_ENST00000447538_5end,CAGE_peak_1_at_ENST00000456876_5end,CAGE_peak_1_at_ENST00000546798_5end,CAGE_peak_1_at_ENST00000552156_5end,CAGE_peak_1_at_uc002uku.2_5end | ||
|id=chr2:177042798..177042859,- | |id=chr2:177042798..177042859,- | ||
|ontology_enrichment_celltype=CL:0002139!2.00e-08!24;CL:0000115!2.75e-07!35 | |ontology_enrichment_celltype=CL:0002139!2.00e-08!24;CL:0000115!2.75e-07!35 | ||
|ontology_enrichment_celltype_v019=CL:0000123;8.64e-16;2!CL:0000242;8.64e-16;2!CL:0002535;2.16e-15;2!CL:1001319;1.06e-08;1!CL:1000600;1.06e-08;1!CL:0000313;2.46e-08;1!CL:0000244;4.54e-08;4!CL:0000731;4.54e-08;4!CL:0000312;7.93e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,8.04e-16,2;CL:0002535,1.45e-15,2;CL:1001319,1.10e-08,1;CL:1000600,1.10e-08,1;CL:0000313,1.84e-08,1;CL:0000244,4.23e-08,4;CL:0000731,4.23e-08,4;CL:0000066,1.79e-07,253;CL:0000312,7.71e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0009117;3.46e-07;10!UBERON:0005564;3.46e-07;10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:4362;1.99e-13;5!DOID:1749;1.58e-08;14!DOID:3151;2.46e-08;1!DOID:2152;2.46e-08;1!DOID:3149;2.46e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:4362,1.17e-13,5;DOID:305,2.70e-12,106;DOID:0050687,3.55e-11,143;DOID:1749,1.71e-08,14;DOID:2152,1.84e-08,1;DOID:3151,4.07e-08,1;DOID:3149,4.07e-08,1;DOID:162,2.77e-07,235;DOID:14566,4.65e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0006554!3.02e-07!44;UBERON:0001008!5.72e-07!45;UBERON:0003887!7.50e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0005910;2.78e-19;6!UBERON:0006955;2.16e-15;2!UBERON:0004801;2.16e-15;2!UBERON:0000365;1.47e-13;5!UBERON:0000002;2.80e-11;6!UBERON:0001560;2.80e-11;6!UBERON:0000486;9.82e-10;12!UBERON:0004645;1.06e-08;1!UBERON:0001256;1.06e-08;1!UBERON:0001259;1.06e-08;1!UBERON:0001301;1.27e-08;1!UBERON:0000997;2.46e-08;1!UBERON:0004911;2.46e-08;1!UBERON:0005056;2.46e-08;1!UBERON:0004176;2.46e-08;1!UBERON:0003133;3.25e-08;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005910,2.72e-19,6;UBERON:0006955,1.45e-15,2;UBERON:0004801,1.45e-15,2;UBERON:0000365,1.38e-13,5;UBERON:0000002,1.80e-11,6;UBERON:0001560,1.80e-11,6;UBERON:0004645,1.10e-08,1;UBERON:0001256,1.10e-08,1;UBERON:0001259,1.10e-08,1;UBERON:0001301,1.37e-08,1;UBERON:0003133,1.46e-08,48;UBERON:0004911,1.84e-08,1;UBERON:0000997,3.53e-08,1;UBERON:0005056,3.53e-08,1;UBERON:0005156,9.29e-07,59;UBERON:0000990,9.29e-07,59 | |||
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| ||
|short_description=p1@ENST00000447538,p1@ENST00000456876,p1@ENST00000546798,p1@ENST00000552156,p1@uc002uku.2 | |short_description=p1@ENST00000447538,p1@ENST00000456876,p1@ENST00000546798,p1@ENST00000552156,p1@uc002uku.2 | ||
}} | }} |
Latest revision as of 02:48, 29 July 2015
Short description: | p1@ENST00000447538, p1@ENST00000456876, p1@ENST00000546798, p1@ENST00000552156, p1@uc002uku.2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ENST00000447538_5end, CAGE_peak_1_at_ENST00000456876_5end, CAGE_peak_1_at_ENST00000546798_5end, CAGE_peak_1_at_ENST00000552156_5end, CAGE_peak_1_at_uc002uku.2_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000447538, ENST00000456876, ENST00000546798, ENST00000552156, uc002uku.2_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 8.04e-16 | 2 |
epithelial cell of cervix | 1.45e-15 | 2 |
bladder cell | 1.10e-08 | 1 |
lower urinary tract cell | 1.10e-08 | 1 |
serous secreting cell | 1.84e-08 | 1 |
transitional epithelial cell | 4.23e-08 | 4 |
urothelial cell | 4.23e-08 | 4 |
epithelial cell | 1.79e-07 | 253 |
keratinocyte | 7.71e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
transitional epithelium | 2.72e-19 | 6 |
uterine epithelium | 1.45e-15 | 2 |
cervix epithelium | 1.45e-15 | 2 |
urothelium | 1.38e-13 | 5 |
uterine cervix | 1.80e-11 | 6 |
neck of organ | 1.80e-11 | 6 |
urinary bladder urothelium | 1.10e-08 | 1 |
wall of urinary bladder | 1.10e-08 | 1 |
mucosa of urinary bladder | 1.10e-08 | 1 |
epididymis | 1.37e-08 | 1 |
reproductive organ | 1.46e-08 | 48 |
epithelium of female gonad | 1.84e-08 | 1 |
mammalian vulva | 3.53e-08 | 1 |
external female genitalia | 3.53e-08 | 1 |
reproductive structure | 9.29e-07 | 59 |
reproductive system | 9.29e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
cervical cancer | 1.17e-13 | 5 |
carcinoma | 2.70e-12 | 106 |
cell type cancer | 3.55e-11 | 143 |
squamous cell carcinoma | 1.71e-08 | 14 |
ovary epithelial cancer | 1.84e-08 | 1 |
skin squamous cell carcinoma | 4.07e-08 | 1 |
keratoacanthoma | 4.07e-08 | 1 |
cancer | 2.77e-07 | 235 |
disease of cellular proliferation | 4.65e-07 | 239 |