FFCP PHASE1:Hg19::chr20:6035530..6035548,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:6035530..6035548,+ | |||
|coexpression_cluster_id=C64 | |||
|description=CAGE_peak_at_chr20:6035530..6035548,+ | |description=CAGE_peak_at_chr20:6035530..6035548,+ | ||
|id=chr20:6035530..6035548,+ | |id=chr20:6035530..6035548,+ | ||
|ontology_enrichment_celltype=CL:1000497!9.87e-15!18;CL:0002518!9.87e-15!18;CL:0000077!1.57e-14!19;CL:1000507!2.05e-14!12;CL:1000494!2.05e-14!12;CL:1000449!4.34e-12!16;CL:0002274!7.83e-10!5;CL:0000457!7.83e-10!5;CL:0002191!7.83e-10!5;CL:0000097!7.83e-10!5;CL:0000831!7.83e-10!5;CL:0002028!7.83e-10!5;CL:0002681!2.40e-08!13;CL:0002584!2.40e-08!13;CL:0000163!3.27e-07!9 | |ontology_enrichment_celltype=CL:1000497!9.87e-15!18;CL:0002518!9.87e-15!18;CL:0000077!1.57e-14!19;CL:1000507!2.05e-14!12;CL:1000494!2.05e-14!12;CL:1000449!4.34e-12!16;CL:0002274!7.83e-10!5;CL:0000457!7.83e-10!5;CL:0002191!7.83e-10!5;CL:0000097!7.83e-10!5;CL:0000831!7.83e-10!5;CL:0002028!7.83e-10!5;CL:0002681!2.40e-08!13;CL:0002584!2.40e-08!13;CL:0000163!3.27e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0000077;2.25e-22;19!CL:0000097;6.97e-21;5!CL:1000507;2.65e-17;10!CL:1000494;2.65e-17;10!CL:0000163;3.25e-16;9!CL:1000497;4.28e-16;17!CL:0002518;4.28e-16;17!CL:1000449;3.27e-11;15!CL:0002195;4.14e-08;2!CL:0002571;4.14e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000077,2.35e-22,19;CL:0000097,6.98e-21,5;CL:0002028,6.98e-21,5;CL:1000507,2.37e-17,10;CL:1000494,2.37e-17,10;CL:0000163,3.25e-16,9;CL:1000497,3.62e-16,17;CL:0002518,3.62e-16,17;CL:1000449,3.04e-11,15;CL:0000213,3.68e-08,58;CL:0000215,3.68e-08,58;CL:0002195,5.07e-08,2;CL:0002571,5.07e-08,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!2.35e-15!14;DOID:120!1.53e-10!27;DOID:193!1.62e-09!29 | |ontology_enrichment_disease=DOID:2394!2.35e-15!14;DOID:120!1.53e-10!27;DOID:193!1.62e-09!29 | ||
|ontology_enrichment_disease_v019=DOID:2394;1.54e-25;14!DOID:120;7.98e-18;27!DOID:193;2.07e-16;29 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.51e-25,14;DOID:120,8.18e-18,27;DOID:193,2.11e-16,29;DOID:162,3.00e-07,235;DOID:14566,5.80e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0009773!2.05e-14!12;UBERON:0001231!2.05e-14!12;UBERON:0004810!2.05e-14!12;UBERON:0006555!5.44e-13!17;UBERON:0005103!5.44e-13!17;UBERON:0000083!5.44e-13!17;UBERON:0009201!5.44e-13!17;UBERON:0004819!5.44e-13!17;UBERON:0006553!5.44e-13!17;UBERON:0003074!5.44e-13!17;UBERON:0003060!5.44e-13!17;UBERON:0002113!2.22e-12!27;UBERON:0003918!2.22e-12!27;UBERON:0005095!2.22e-12!27;UBERON:0007687!2.22e-12!27;UBERON:0004211!4.34e-12!16;UBERON:0001285!4.34e-12!16;UBERON:0007684!4.34e-12!16;UBERON:0003220!4.34e-12!16;UBERON:0004208!4.34e-12!16;UBERON:0000080!4.58e-12!18;UBERON:0002120!4.58e-12!18;UBERON:0004875!4.58e-12!18;UBERON:0005721!4.58e-12!18;UBERON:0005754!4.58e-12!18;UBERON:0007297!4.58e-12!18;UBERON:0003887!3.02e-11!21;UBERON:0003886!3.47e-11!63;UBERON:0000489!6.24e-11!32;UBERON:0005172!1.06e-10!55;UBERON:0005173!1.06e-10!55;UBERON:0004876!1.69e-10!20;UBERON:0000992!1.75e-10!13;UBERON:0002553!2.68e-09!70;UBERON:0002417!5.69e-09!61;UBERON:0000916!5.69e-09!61;UBERON:0006554!2.08e-08!44;UBERON:0001225!2.40e-08!13;UBERON:0008987!2.40e-08!13;UBERON:0001851!3.56e-08!16;UBERON:0003103!4.00e-08!69;UBERON:0001008!4.18e-08!45;UBERON:0002118!4.60e-08!5;UBERON:0004532!4.60e-08!5;UBERON:0003064!1.03e-07!37;UBERON:0000353!2.15e-07!17;UBERON:0000058!2.73e-07!26;UBERON:0000991!9.00e-07!21;UBERON:0009196!9.00e-07!21;UBERON:0009117!9.00e-07!21;UBERON:0005564!9.00e-07!21 | |ontology_enrichment_uberon=UBERON:0009773!2.05e-14!12;UBERON:0001231!2.05e-14!12;UBERON:0004810!2.05e-14!12;UBERON:0006555!5.44e-13!17;UBERON:0005103!5.44e-13!17;UBERON:0000083!5.44e-13!17;UBERON:0009201!5.44e-13!17;UBERON:0004819!5.44e-13!17;UBERON:0006553!5.44e-13!17;UBERON:0003074!5.44e-13!17;UBERON:0003060!5.44e-13!17;UBERON:0002113!2.22e-12!27;UBERON:0003918!2.22e-12!27;UBERON:0005095!2.22e-12!27;UBERON:0007687!2.22e-12!27;UBERON:0004211!4.34e-12!16;UBERON:0001285!4.34e-12!16;UBERON:0007684!4.34e-12!16;UBERON:0003220!4.34e-12!16;UBERON:0004208!4.34e-12!16;UBERON:0000080!4.58e-12!18;UBERON:0002120!4.58e-12!18;UBERON:0004875!4.58e-12!18;UBERON:0005721!4.58e-12!18;UBERON:0005754!4.58e-12!18;UBERON:0007297!4.58e-12!18;UBERON:0003887!3.02e-11!21;UBERON:0003886!3.47e-11!63;UBERON:0000489!6.24e-11!32;UBERON:0005172!1.06e-10!55;UBERON:0005173!1.06e-10!55;UBERON:0004876!1.69e-10!20;UBERON:0000992!1.75e-10!13;UBERON:0002553!2.68e-09!70;UBERON:0002417!5.69e-09!61;UBERON:0000916!5.69e-09!61;UBERON:0006554!2.08e-08!44;UBERON:0001225!2.40e-08!13;UBERON:0008987!2.40e-08!13;UBERON:0001851!3.56e-08!16;UBERON:0003103!4.00e-08!69;UBERON:0001008!4.18e-08!45;UBERON:0002118!4.60e-08!5;UBERON:0004532!4.60e-08!5;UBERON:0003064!1.03e-07!37;UBERON:0000353!2.15e-07!17;UBERON:0000058!2.73e-07!26;UBERON:0000991!9.00e-07!21;UBERON:0009196!9.00e-07!21;UBERON:0009117!9.00e-07!21;UBERON:0005564!9.00e-07!21 | ||
|ontology_enrichment_uberon_v019=UBERON:0004211;2.65e-17;10!UBERON:0009773;2.65e-17;10!UBERON:0001231;2.65e-17;10!UBERON:0004810;2.65e-17;10!UBERON:0000992;4.04e-13;13!UBERON:0006555;3.27e-11;15!UBERON:0004819;3.27e-11;15!UBERON:0001285;3.27e-11;15!UBERON:0007684;3.27e-11;15!UBERON:0002113;6.34e-11;24!UBERON:0011143;6.34e-11;24!UBERON:0005172;8.41e-10;52!UBERON:0005173;8.41e-10;52!UBERON:0002119;5.45e-09;4!UBERON:0000489;9.14e-09;29!UBERON:0006554;2.02e-08;30!UBERON:0001008;2.02e-08;30!UBERON:0000991;9.42e-08;21!UBERON:0002118;2.33e-07;5!UBERON:0002417;4.28e-07;58!UBERON:0000916;4.28e-07;58 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,2.37e-17,10;UBERON:0000992,4.24e-13,13;UBERON:0005172,7.23e-12,54;UBERON:0005173,7.23e-12,54;UBERON:0004211,3.04e-11,15;UBERON:0009773,3.04e-11,15;UBERON:0001231,3.04e-11,15;UBERON:0001285,3.04e-11,15;UBERON:0007684,3.04e-11,15;UBERON:0004208,3.04e-11,15;UBERON:0006555,1.76e-10,16;UBERON:0004819,1.76e-10,16;UBERON:0002417,2.39e-10,60;UBERON:0000916,2.39e-10,60;UBERON:0002113,5.25e-10,26;UBERON:0003918,5.25e-10,26;UBERON:0011143,5.25e-10,26;UBERON:0005095,5.25e-10,26;UBERON:0007687,5.25e-10,26;UBERON:0002119,5.45e-09,4;UBERON:0000489,3.90e-08,31;UBERON:0000991,9.69e-08,21;UBERON:0009196,9.69e-08,21;UBERON:0009117,9.69e-08,21;UBERON:0005564,9.69e-08,21;UBERON:0002118,2.23e-07,5;UBERON:0004176,2.41e-07,22 | |||
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|short_description=p@chr20:6035530..6035548,+ | |short_description=p@chr20:6035530..6035548,+ | ||
}} | }} |
Latest revision as of 16:05, 28 July 2015
Short description: | p@chr20:6035530..6035548, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:6035530..6035548, + |
Coexpression cluster: | C64_Mast_chronic_acute_immature_chorionic_Basophils_Dendritic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesothelial cell | 2.35e-22 | 19 |
mast cell | 6.98e-21 | 5 |
basophil mast progenitor cell | 6.98e-21 | 5 |
kidney tubule cell | 2.37e-17 | 10 |
nephron tubule epithelial cell | 2.37e-17 | 10 |
endocrine cell | 3.25e-16 | 9 |
kidney cell | 3.62e-16 | 17 |
kidney epithelial cell | 3.62e-16 | 17 |
epithelial cell of nephron | 3.04e-11 | 15 |
lining cell | 3.68e-08 | 58 |
barrier cell | 3.68e-08 | 58 |
hepatic stem cell | 5.07e-08 | 2 |
hepatic mesenchymal stem cell | 5.07e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 2.37e-17 | 10 |
female gonad | 4.24e-13 | 13 |
abdomen element | 7.23e-12 | 54 |
abdominal segment element | 7.23e-12 | 54 |
nephron epithelium | 3.04e-11 | 15 |
renal tubule | 3.04e-11 | 15 |
nephron tubule | 3.04e-11 | 15 |
nephron | 3.04e-11 | 15 |
uriniferous tubule | 3.04e-11 | 15 |
nephrogenic mesenchyme | 3.04e-11 | 15 |
excretory tube | 1.76e-10 | 16 |
kidney epithelium | 1.76e-10 | 16 |
abdominal segment of trunk | 2.39e-10 | 60 |
abdomen | 2.39e-10 | 60 |
kidney | 5.25e-10 | 26 |
kidney mesenchyme | 5.25e-10 | 26 |
upper urinary tract | 5.25e-10 | 26 |
kidney rudiment | 5.25e-10 | 26 |
kidney field | 5.25e-10 | 26 |
left ovary | 5.45e-09 | 4 |
cavitated compound organ | 3.90e-08 | 31 |
gonad | 9.69e-08 | 21 |
indifferent external genitalia | 9.69e-08 | 21 |
indifferent gonad | 9.69e-08 | 21 |
gonad primordium | 9.69e-08 | 21 |
right ovary | 2.23e-07 | 5 |
external genitalia | 2.41e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.51e-25 | 14 |
female reproductive organ cancer | 8.18e-18 | 27 |
reproductive organ cancer | 2.11e-16 | 29 |
cancer | 3.00e-07 | 235 |
disease of cellular proliferation | 5.80e-07 | 239 |