FFCP PHASE1:Hg19::chr20:24911267..24911310,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr20:24911267..24911310,+ | |||
|coexpression_cluster_id=C4020 | |||
|description=CAGE_peak_at_chr20:24911267..24911310,+ | |description=CAGE_peak_at_chr20:24911267..24911310,+ | ||
|id=chr20:24911267..24911310,+ | |id=chr20:24911267..24911310,+ | ||
|ontology_enrichment_celltype=CL:0002076!4.96e-15!43;CL:0000223!3.87e-12!59;CL:0000066!8.10e-11!254;CL:0002251!1.46e-07!21 | |ontology_enrichment_celltype=CL:0002076!4.96e-15!43;CL:0000223!3.87e-12!59;CL:0000066!8.10e-11!254;CL:0002251!1.46e-07!21 | ||
|ontology_enrichment_celltype_v019=CL:0002251;1.91e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,2.37e-08,42;CL:0002251,2.05e-07,20;CL:0000223,2.61e-07,58;CL:0000066,3.46e-07,253 | |||
|ontology_enrichment_development_v019=UBERON:0006595;2.34e-13;86!UBERON:0001041;8.81e-07;30 | |||
|ontology_enrichment_disease=DOID:1749!4.28e-14!14;DOID:305!9.46e-11!106;DOID:299!5.32e-09!25;DOID:0050687!7.88e-07!143 | |ontology_enrichment_disease=DOID:1749!4.28e-14!14;DOID:305!9.46e-11!106;DOID:299!5.32e-09!25;DOID:0050687!7.88e-07!143 | ||
|ontology_enrichment_disease_v019=DOID:1749;1.58e-21;14!DOID:299;6.91e-12;25!DOID:5093;2.44e-08;4!DOID:1612;2.44e-08;4!DOID:305;7.11e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.45e-21,14;DOID:305,4.68e-19,106;DOID:0050687,1.21e-14,143;DOID:299,6.64e-12,25;DOID:5093,2.90e-08,4;DOID:1612,2.90e-08,4 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.81e-24!169;UBERON:0000925!1.81e-24!169;UBERON:0006595!1.81e-24!169;UBERON:0001007!7.40e-21!155;UBERON:0001555!7.40e-21!155;UBERON:0007026!7.40e-21!155;UBERON:0004921!2.15e-17!129;UBERON:0004185!2.15e-17!129;UBERON:0000077!1.49e-14!130;UBERON:0005911!9.05e-14!82;UBERON:0001004!1.28e-12!72;UBERON:0001041!1.09e-10!98;UBERON:0007023!2.51e-10!115;UBERON:0000466!2.54e-10!126;UBERON:0000464!3.96e-10!104;UBERON:0000161!1.34e-09!35;UBERON:0000065!2.79e-09!53;UBERON:0000974!1.05e-08!10;UBERON:0005153!1.44e-08!37;UBERON:0000344!3.04e-08!12;UBERON:0005178!8.46e-08!34;UBERON:0002224!8.46e-08!34;UBERON:0005177!1.65e-07!107;UBERON:0005181!2.02e-07!35;UBERON:0000915!2.20e-07!52;UBERON:0009569!5.09e-07!113;UBERON:0000166!5.70e-07!21 | |ontology_enrichment_uberon=UBERON:0004119!1.81e-24!169;UBERON:0000925!1.81e-24!169;UBERON:0006595!1.81e-24!169;UBERON:0001007!7.40e-21!155;UBERON:0001555!7.40e-21!155;UBERON:0007026!7.40e-21!155;UBERON:0004921!2.15e-17!129;UBERON:0004185!2.15e-17!129;UBERON:0000077!1.49e-14!130;UBERON:0005911!9.05e-14!82;UBERON:0001004!1.28e-12!72;UBERON:0001041!1.09e-10!98;UBERON:0007023!2.51e-10!115;UBERON:0000466!2.54e-10!126;UBERON:0000464!3.96e-10!104;UBERON:0000161!1.34e-09!35;UBERON:0000065!2.79e-09!53;UBERON:0000974!1.05e-08!10;UBERON:0005153!1.44e-08!37;UBERON:0000344!3.04e-08!12;UBERON:0005178!8.46e-08!34;UBERON:0002224!8.46e-08!34;UBERON:0005177!1.65e-07!107;UBERON:0005181!2.02e-07!35;UBERON:0000915!2.20e-07!52;UBERON:0009569!5.09e-07!113;UBERON:0000166!5.70e-07!21 | ||
|ontology_enrichment_uberon_v019=UBERON:0000974;1.62e-11;6!UBERON:0002294;1.59e-09;7!UBERON:0001173;1.59e-09;7!UBERON:0000058;3.70e-09;10!UBERON:0004921;7.40e-09;33!UBERON:0003343;3.40e-08;4!UBERON:0004785;3.40e-08;4!UBERON:0006947;2.65e-07;3!UBERON:0004054;2.65e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,5.43e-22,160;UBERON:0000925,5.43e-22,160;UBERON:0006595,5.43e-22,160;UBERON:0001007,2.15e-21,145;UBERON:0001555,2.15e-21,145;UBERON:0007026,2.15e-21,145;UBERON:0004921,1.09e-17,118;UBERON:0005911,3.61e-12,82;UBERON:0001041,4.06e-12,87;UBERON:0000974,7.19e-11,10;UBERON:0001004,2.22e-10,74;UBERON:0000161,1.23e-09,36;UBERON:0003343,3.70e-08,4;UBERON:0004785,3.70e-08,4;UBERON:0000065,1.88e-07,54;UBERON:0007023,1.99e-07,114;UBERON:0006947,2.66e-07,3;UBERON:0004054,2.66e-07,3;UBERON:0002294,3.32e-07,9;UBERON:0001173,3.32e-07,9;UBERON:0004912,3.32e-07,9;UBERON:0000166,4.42e-07,22;UBERON:0005177,4.78e-07,101;UBERON:0006562,6.56e-07,11;UBERON:0002110,9.47e-07,3;UBERON:0006242,9.47e-07,3 | |||
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| ||
|short_description=p@chr20:24911267..24911310,+ | |short_description=p@chr20:24911267..24911310,+ | ||
}} | }} |
Latest revision as of 12:38, 28 July 2015
Short description: | p@chr20:24911267..24911310, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr20:24911267..24911310, + |
Coexpression cluster: | C4020_thyroid_parotid_squamous_ductus_salivary_Neutrophils_seminal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 2.37e-08 | 42 |
epithelial cell of alimentary canal | 2.05e-07 | 20 |
endodermal cell | 2.61e-07 | 58 |
epithelial cell | 3.46e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 5.43e-22 | 160 |
endoderm | 5.43e-22 | 160 |
presumptive endoderm | 5.43e-22 | 160 |
digestive system | 2.15e-21 | 145 |
digestive tract | 2.15e-21 | 145 |
primitive gut | 2.15e-21 | 145 |
subdivision of digestive tract | 1.09e-17 | 118 |
endo-epithelium | 3.61e-12 | 82 |
foregut | 4.06e-12 | 87 |
neck | 7.19e-11 | 10 |
respiratory system | 2.22e-10 | 74 |
orifice | 1.23e-09 | 36 |
mucosa of oral region | 3.70e-08 | 4 |
respiratory system mucosa | 3.70e-08 | 4 |
respiratory tract | 1.88e-07 | 54 |
adult organism | 1.99e-07 | 114 |
male genital duct | 2.66e-07 | 3 |
internal male genitalia | 2.66e-07 | 3 |
biliary system | 3.32e-07 | 9 |
biliary tree | 3.32e-07 | 9 |
biliary bud | 3.32e-07 | 9 |
oral opening | 4.42e-07 | 22 |
trunk region element | 4.78e-07 | 101 |
pharynx | 6.56e-07 | 11 |
gallbladder | 9.47e-07 | 3 |
gall bladder primordium | 9.47e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.45e-21 | 14 |
carcinoma | 4.68e-19 | 106 |
cell type cancer | 1.21e-14 | 143 |
adenocarcinoma | 6.64e-12 | 25 |
thoracic cancer | 2.90e-08 | 4 |
breast cancer | 2.90e-08 | 4 |