FFCP PHASE1:Hg19::chr1:240926680..240926686,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:240926680..240926686,+ | |||
|coexpression_cluster_id=C277 | |coexpression_cluster_id=C277 | ||
|description=CAGE_peak_at_chr1:240926680..240926686,+ | |description=CAGE_peak_at_chr1:240926680..240926686,+ | ||
|id=chr1:240926680..240926686,+ | |id=chr1:240926680..240926686,+ | ||
|ontology_enrichment_celltype=CL:0000077!2.94e-15!19;CL:0000066!2.34e-13!254;CL:0000076!5.74e-07!62 | |ontology_enrichment_celltype=CL:0000077!2.94e-15!19;CL:0000066!2.34e-13!254;CL:0000076!5.74e-07!62 | ||
|ontology_enrichment_celltype_v019=CL:0000077;1.62e-38;19!CL:0002097;2.31e-13;2!CL:0000174;3.32e-09;3!CL:0000511;2.39e-07;1!CL:0002625;2.39e-07;1!CL:0000216;2.39e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000077,1.40e-38,19;CL:0000076,1.75e-14,63;CL:0002097,2.24e-13,2;CL:0000213,2.81e-11,58;CL:0000215,2.81e-11,58;CL:0000174,3.26e-09,3;CL:0000511,2.04e-07,1;CL:0002625,2.04e-07,1;CL:0000216,2.04e-07,1 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!3.52e-16!235;DOID:14566!2.03e-15!239;DOID:0050687!1.52e-13!143;DOID:305!1.54e-09!106;DOID:1115!2.82e-07!20 | |ontology_enrichment_disease=DOID:162!3.52e-16!235;DOID:14566!2.03e-15!239;DOID:0050687!1.52e-13!143;DOID:305!1.54e-09!106;DOID:1115!2.82e-07!20 | ||
|ontology_enrichment_disease_v019=DOID:3371;5.22e-08;1!DOID:4549;5.22e-08;1!DOID:5861;5.22e-08;1!DOID:6496;5.22e-08;1!DOID:6193;6.37e-08;1!DOID:3369;2.39e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.38e-09,235;DOID:14566,2.72e-09,239;DOID:3371,5.22e-08,1;DOID:4549,5.22e-08,1;DOID:5861,5.22e-08,1;DOID:6496,5.22e-08,1;DOID:6193,6.37e-08,1;DOID:3369,1.80e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0000473!5.22e-07!8 | |ontology_enrichment_uberon=UBERON:0000473!5.22e-07!8 | ||
|ontology_enrichment_uberon_v019=UBERON:0000473;2.04e-12;8!UBERON:0002369;3.32e-09;3!UBERON:0001235;3.32e-09;3!UBERON:0006858;3.32e-09;3!UBERON:0003135;4.51e-09;11!UBERON:0001282;1.30e-07;1!UBERON:0009842;1.30e-07;1!UBERON:0003704;1.30e-07;1!UBERON:0001171;1.30e-07;1!UBERON:0001172;1.30e-07;1!UBERON:0001136;2.39e-07;1!UBERON:0001343;2.39e-07;1!UBERON:0004910;2.39e-07;1!UBERON:0004813;2.39e-07;1!UBERON:0003101;9.62e-07;22!UBERON:0000079;9.62e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,2.13e-12,8;UBERON:0002369,3.26e-09,3;UBERON:0001235,3.26e-09,3;UBERON:0006858,3.26e-09,3;UBERON:0003135,4.66e-09,11;UBERON:0001282,1.22e-07,1;UBERON:0009842,1.22e-07,1;UBERON:0003704,1.22e-07,1;UBERON:0001171,1.22e-07,1;UBERON:0001172,1.22e-07,1;UBERON:0001136,2.04e-07,1;UBERON:0001343,2.04e-07,1;UBERON:0004910,2.04e-07,1;UBERON:0005154,2.04e-07,1;UBERON:0005295,2.04e-07,1;UBERON:0004813,2.04e-07,1;UBERON:0005297,2.04e-07,1;UBERON:0005294,2.04e-07,1;UBERON:0010141,2.04e-07,1;UBERON:0005891,2.04e-07,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0.443458794925128,0.087834785693126,0.851363990735132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0.337834441449967,0,0,0,0,0,0,1.98788780678127,0,0.529636723252875,0,0,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277064115484183,0,0,0,0.113432183160021,0,0.213557388818567,0,0.300091096084402,0.103052529238439,0.515281080091258,0.18611685633159,0,0.194874010322397,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0.122988438543114,0.171567810298526,0,0,0,0,0,0,1.44331342025273,0,0.234817388471643,0.721832238805369,0.462985512576611,0.190254152234598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26593811658487,1.04007436911366,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0.434343920002738,0,0,0.112085143993527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.623912584592421,0.892144943985809,0.473107245101804,0.234282829985426,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496215615637554,0.306923946576125,0,0,0,0.160853921143607,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0.784349769176855,0,0,0,0,0.215915916102139,0,0.270946437543853,0,0.509752546090077,0.831076008928724,0,0,0,0,0.656029291399411,0,0,0,0,0,0,1.6068392984416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0.286249773483982,0,0,0.38126038784765,0,0,0,0,0,0,0,0,3.17020642346017,0,0.48763373908959,0,0,0,0,0,0,0.66343897524122,1.75380354101505,0,0,0.811641507850816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.4573727428809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0.222886768554957,0,0,0,0.614321404198464,0,0,0.111308705022906,0,1.47787785689595,0,0,0,0.20453736500431,0,0.311039587661807,0.539210106883961,0,0,0,0,0,0,0,0,0,0,0,0.1137934482855,0,0.472775363535873,0,0,0,0,0,0,0,0,0,0.10893846351899,0.139423744278603,0,3.41826167541004,0,0,0,0,0,0,0,0,0,0.225595660617181,0,0,0,0,0,0,0.141353071433941,0,0,0,0,0.296521128680622,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,4.96067284067825,0.103688191397247,0,0.330991955875499,0,0,0,0.832048038078832,0.173559738335131,0,0,0,33.5372763319652,0,0.146178634172371,0,0,63.8091795979547,0,0.137041924646751,0.794858446811959,0,0.195551382734803,3.04603516955828,0,0,0,0.916292769327325,0,0,0,0,36.0146146095077,34.51893928307,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0674035438541849,0.0984274815147488,0,0,0,0.321506296930038,0,0,0,0,0,0,0,0,0,0,0.383830394638891,0,0,0,0,0,0,0,0.082092520749339,0.170388021785422,0.226624183040251,0,0,0,0,0,2.11444506695002,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0.37494122388632,0.151649117541648,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,1.54095864325843,4.07439023612359,7.30784017502592,0,0.694567422971502,200.19462428629,74.8591355720617,6.17602894321944,13.8148951234585,0,2.50788249752189,0.844712203265363,0,18.3078081117535,5.77333916737026,0,0,0,0,0,0.737318726261158,0.633936370075881,0,0,0,2.27006381426734,0,0,0,0.127894371303652,0,0,0,0,0,0,0,0.636008701306837,0,0.80057074828547,0,0,0,0,0,0,0,0,0,0,0,0.589848616738702,0,0.924205329202706,0,0,0,0,0,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0.514464028312255,0,0,0,1.11231401892069,0,0,0,0,0.647782773655864,0,0,0,0,0.347716544605159,0,0,0,0,0,0,0,0,0.68732060563215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471353094203252,0,0,0,0.339854229375634,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0.432626562123789,0,0,0,0.815910637935854,0,0.0918948995348449,1.25353769646188,1.43979526614655,4.28742608249886,0,0,0,0,0,0.0620747142958579,73.3342381277212,0,0,0,0,0,0,0,0.162806537221949,0.106727345877715,0,0,0,0,0,0,0,0 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| ||
|short_description=p@chr1:240926680..240926686,+ | |short_description=p@chr1:240926680..240926686,+ | ||
}} | }} |
Latest revision as of 05:40, 28 July 2015
Short description: | p@chr1:240926680..240926686, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:240926680..240926686, + |
Coexpression cluster: | C277_mesothelioma_epithelioid_thyroid_extraskeletal_alveolar_glioblastoma_adenocarcinoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesothelial cell | 1.40e-38 | 19 |
squamous epithelial cell | 1.75e-14 | 63 |
cortical cell of adrenal gland | 2.24e-13 | 2 |
lining cell | 2.81e-11 | 58 |
barrier cell | 2.81e-11 | 58 |
steroid hormone secreting cell | 3.26e-09 | 3 |
androgen binding protein secreting cell | 2.04e-07 | 1 |
seminiferous tubule epithelial cell | 2.04e-07 | 1 |
Sertoli cell | 2.04e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
testis | 2.13e-12 | 8 |
adrenal gland | 3.26e-09 | 3 |
adrenal cortex | 3.26e-09 | 3 |
adrenal/interrenal gland | 3.26e-09 | 3 |
male reproductive organ | 4.66e-09 | 11 |
intralobular bile duct | 1.22e-07 | 1 |
acinus | 1.22e-07 | 1 |
intrahepatic bile duct | 1.22e-07 | 1 |
portal lobule | 1.22e-07 | 1 |
hepatic acinus | 1.22e-07 | 1 |
mesothelium | 2.04e-07 | 1 |
seminiferous tubule of testis | 2.04e-07 | 1 |
epithelium of male gonad | 2.04e-07 | 1 |
epithelial cord | 2.04e-07 | 1 |
sex cord | 2.04e-07 | 1 |
seminiferous tubule epithelium | 2.04e-07 | 1 |
testis sex cord | 2.04e-07 | 1 |
genital ridge | 2.04e-07 | 1 |
primitive sex cord of indifferent gonad | 2.04e-07 | 1 |
coelomic epithelium | 2.04e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.38e-09 | 235 |
disease of cellular proliferation | 2.72e-09 | 239 |
chondrosarcoma | 5.22e-08 | 1 |
extraosseous chondrosarcoma | 5.22e-08 | 1 |
myxoid chondrosarcoma | 5.22e-08 | 1 |
extraskeletal myxoid chondrosarcoma | 5.22e-08 | 1 |
epithelioid sarcoma | 6.37e-08 | 1 |
peripheral primitive neuroectodermal tumor | 1.80e-07 | 1 |