FFCP PHASE1:Hg19::chr1:16375473..16375497,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=114bp_to_BC109243_5end | |association_with_transcript=114bp_to_BC109243_5end | ||
|cluster_id=chr1:16375473..16375497,+ | |||
|description=CAGE_peak_1_at_BC109243_5end | |description=CAGE_peak_1_at_BC109243_5end | ||
|id=chr1:16375473..16375497,+ | |id=chr1:16375473..16375497,+ | ||
|ontology_enrichment_celltype=CL:0002322!2.38e-07!5 | |ontology_enrichment_celltype=CL:0002322!2.38e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0002322;1.65e-36;5!CL:0002321;4.10e-12;15!CL:0002581;1.27e-08;1!CL:0002616;1.27e-08;1!CL:0000306;3.21e-08;4!CL:0002222;3.21e-08;4!CL:0002224;3.21e-08;4!CL:0000148;3.34e-07;10!CL:0002537;5.99e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,2.80e-36,5;CL:0002616,8.36e-09,1;CL:0002581,1.32e-08,1;CL:0000306,3.22e-08,4;CL:0002222,3.22e-08,4;CL:0002224,3.22e-08,4;CL:0000148,3.80e-07,10;CL:0000541,3.80e-07,10;CL:0002537,6.85e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0004140;5.27e-09;1!UBERON:0010115;1.27e-08;1!UBERON:0007123;4.00e-07;5 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:178;5.27e-09;1!DOID:326;5.27e-09;1!DOID:3978;5.27e-09;1!DOID:3394;5.27e-09;1!DOID:5844;5.27e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:178,5.70e-09,1;DOID:326,5.70e-09,1;DOID:3978,5.70e-09,1;DOID:3394,5.70e-09,1;DOID:5844,5.70e-09,1 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;1.86e-16;2!UBERON:0002757;1.86e-16;2!UBERON:0010134;1.86e-16;2!UBERON:0005408;1.86e-16;2!UBERON:0001899;1.86e-16;2!UBERON:0005406;1.54e-15;2!UBERON:0003296;1.13e-08;4!UBERON:0010133;1.13e-08;4!UBERON:0002784;1.13e-08;4!UBERON:0002363;1.27e-08;1!UBERON:0010077;3.21e-08;4!UBERON:0005389;3.21e-08;4!UBERON:0000484;3.21e-08;4!UBERON:0000965;3.21e-08;4!UBERON:0001803;3.21e-08;4!UBERON:0002046;4.00e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,1.73e-16,2;UBERON:0002757,1.73e-16,2;UBERON:0010134,1.73e-16,2;UBERON:0005408,1.73e-16,2;UBERON:0001899,1.73e-16,2;UBERON:0005406,1.06e-15,2;UBERON:0003296,1.09e-08,4;UBERON:0010133,1.09e-08,4;UBERON:0002784,1.09e-08,4;UBERON:0002363,1.91e-08,1;UBERON:0007645,1.91e-08,1;UBERON:0007647,1.91e-08,1;UBERON:0010115,1.91e-08,1;UBERON:0010077,3.22e-08,4;UBERON:0005389,3.22e-08,4;UBERON:0000484,3.22e-08,4;UBERON:0002546,3.22e-08,4;UBERON:0000965,3.22e-08,4;UBERON:0001803,3.22e-08,4;UBERON:0003073,3.22e-08,4;UBERON:0005426,3.22e-08,4;UBERON:0002046,3.66e-07,5;UBERON:0004117,3.66e-07,5;UBERON:0007689,3.66e-07,5;UBERON:0007123,3.66e-07,5;UBERON:0003091,3.66e-07,5 | |||
|phase1_expression=0,0.214100523890983,0.281908808191942,0,0,1.74467704820074,0,0,0,0,1.39560233594486,0.218441372130172,0,0.247532705920093,0,0,0,0,0,0.123121058076788,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.361439152384566,0,0.434539556882471,0,0,0.378139268656271,0.443458794925128,0,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0.112611480483322,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.204154171254893,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0.150238058906597,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0.184099797284599,0.484938170456436,0.355009592516614,0.705264687593482,0,0,0,0,1.46368447355514,1.59035721985782,1.74290914304278,1.0366105501537,2.01856680700503,0.36497735907583,0,0.643240938192885,0,0,0,0.354920400119532,0.168584690078102,0,0.330881918197182,0.217879444092406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0925884451585296,0.325808305310325,0,1.44331342025273,1.62302566965108,0,0,0.462985512576611,0,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.57656445851882,0,0,0,0,0,0,0.285955987316295,0.542621605391443,0,0,0.355391948742546,0,0,0,0.299918973546171,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0.24538298343828,0,0,0.207970861530807,0,0.788512075169673,0.117141414992713,0,0,0,0,0,0.0868836144680828,0.195801157462741,0,0,0,0,0.303127571446259,1.66435439510497,0.604780586659361,0,0.153461973288062,0.280660094433074,0.256278298511402,0,0.321707842287215,1.48418066444991,0,0,0,0,0.116210378459959,0,0,0,0,0,0.131124414959424,0.902399225814824,0.231046011313244,0,0,0.105551628892876,0,0,0,0,0.812839312631559,0.501689773854853,0,0,0.447749509444357,0,0,0.512900250232778,0,0,0.412164046590889,0,0.082509499920588,0,0,0,0,0.154048617114644,0,0,0.107420244868274,0,0,0.0890320356467374,0.330569830721956,0,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0,0.54907405947211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0.392996164052485,0,0,0.633322905892992,0.987884678879706,0,0.349934720244983,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43246690842614,0.296964680832639,3.07160702099232,0,0.140669416410513,0.111308705022906,0,0,0.19924798825107,0,0,0.306806047506464,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,1.77977555204936,0.472775363535873,0,0,0,0,0,0,0.774054819518572,0.295547618953547,0,0.762569244632931,0,0.615602068030377,0,0.69169171316418,0.538545866458633,0.217294743844016,0.31900115973192,0.183195186803725,0,0,0,0.332423363800313,0.225595660617181,0.392125068635479,0.503464760927528,0.189753732724185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.391329237864179,0,0,0,0,1.39010475182674,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0.17472666824203,0,0,0,0.0821154570532092,0,0,0.677942222341597,0,0,0,0.391102765469606,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.687481272035051,0,2.1964690054889,0.429226048136571,0.223171457441873,2.21705459206197,0,0,0,0,0,0,0,0,0,1.60753148465019,0.275078873194468,0.415440338029185,0,0,0.182248669974074,0,0.630445658393585,2.09818352539992,0.316801009558219,0,0.191915197319445,0,0.662091970365432,0,0,0,0,0,0,0,0.453248366080503,0,0,0.129282956361551,0,0.171086837884329,0,0,0.471612915298998,0.414239055347196,0,0,0,0,0,0,0.306345576763462,0,0.157054096250234,0.886068179966986,0,0,0.573409195690071,0.221858103073705,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.450772826991655,0,0.406870733204662,0,0,0,0.398095888698616,0,0.343395705182793,0.336749488765919,0,0,0.214441591374926,0,0,0,0.734210113519403,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.567515953566836,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0.352675943690684,0.6124909547064,0.0642292250964595,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0.300841313397029,0,0,0,0,0.295712172434091,0,0,0.206686796501184,0,0,0.548257766857182,0.496211178389294,0,0.255524855279191,3.21421101526972,2.35398605553177,0.606965604236632,0.227662191351298,0.443511850813194,0,0,0.0679697329768317,0,0,0,0.156986185701028,0,0.280272163313789,0,0,1.9110067515482,0.929195074296532,0,0,0.521574816907738,0,0,0,0,1.29068207646083,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219881033490858,0.452888530700021,0.0771741581079447,0.437119121007915,0,0.245148321753905,0,0.785233868459781,0,0.8453114551668,0.169927114687817,0,0.0644578879735772,0,0,0,0.160482733378337,0,0,0,0,0,0,0,0,0.924351257262837,0.432626562123789,0.126166424835079,0.546327859818478,0.126698501011437,0,0.801652215796681,0.275684698604535,0,0.0757786982182394,0,0,0,0.639701945702943,2.3806443146374,0,0,0.672791175483681,7.57401183510162,2.42540626749863,0,0,0,0.143444410785353,0,0.0814032686109745,0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| ||
|short_description=p1@BC109243 | |short_description=p1@BC109243 | ||
}} | }} |
Latest revision as of 23:50, 27 July 2015
Short description: | p1@BC109243 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_BC109243_5end |
Coexpression cluster: | NA |
Association with transcript: | 114bp_to_BC109243_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 2.80e-36 | 5 |
perirenal adipocyte cell | 8.36e-09 | 1 |
perirenal preadipocyte | 1.32e-08 | 1 |
crystallin accumulating cell | 3.22e-08 | 4 |
vertebrate lens cell | 3.22e-08 | 4 |
lens epithelial cell | 3.22e-08 | 4 |
melanocyte | 3.80e-07 | 10 |
melanoblast | 3.80e-07 | 10 |
amnion mesenchymal stem cell | 6.85e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
pineal body | 1.73e-16 | 2 |
regional part of epithalamus | 1.73e-16 | 2 |
secretory circumventricular organ | 1.73e-16 | 2 |
circumventricular organ | 1.73e-16 | 2 |
epithalamus | 1.73e-16 | 2 |
perirenal fat | 1.06e-15 | 2 |
gland of diencephalon | 1.09e-08 | 4 |
neuroendocrine gland | 1.09e-08 | 4 |
regional part of diencephalon | 1.09e-08 | 4 |
dura mater | 1.91e-08 | 1 |
future meninx | 1.91e-08 | 1 |
ectomeninx | 1.91e-08 | 1 |
future dura mater | 1.91e-08 | 1 |
cuboidal epithelium | 3.22e-08 | 4 |
transparent eye structure | 3.22e-08 | 4 |
simple cuboidal epithelium | 3.22e-08 | 4 |
cranial placode | 3.22e-08 | 4 |
lens of camera-type eye | 3.22e-08 | 4 |
epithelium of lens | 3.22e-08 | 4 |
lens placode | 3.22e-08 | 4 |
lens vesicle | 3.22e-08 | 4 |
thyroid gland | 3.66e-07 | 5 |
pharyngeal pouch | 3.66e-07 | 5 |
thyroid diverticulum | 3.66e-07 | 5 |
pharyngeal pouch 2 | 3.66e-07 | 5 |
thyroid primordium | 3.66e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
vascular disease | 5.70e-09 | 1 |
ischemia | 5.70e-09 | 1 |
extrinsic cardiomyopathy | 5.70e-09 | 1 |
myocardial ischemia | 5.70e-09 | 1 |
myocardial infarction | 5.70e-09 | 1 |