FFCP PHASE1:Hg19::chr1:155274590..155274615,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr1:155274590..155274615,+ | |||
|coexpression_cluster_id=C783 | |coexpression_cluster_id=C783 | ||
|description=CAGE_peak_at_chr1:155274590..155274615,+ | |description=CAGE_peak_at_chr1:155274590..155274615,+ | ||
|id=chr1:155274590..155274615,+ | |id=chr1:155274590..155274615,+ | ||
|ontology_enrichment_celltype=CL:1000497!8.16e-18!18;CL:0002518!8.16e-18!18;CL:0000181!1.25e-14!12;CL:0000417!1.25e-14!12;CL:0000668!1.25e-14!12;CL:0000414!1.25e-14!12;CL:0000412!1.25e-14!12;CL:0000182!1.25e-14!12;CL:1000507!1.23e-13!12;CL:1000494!1.23e-13!12;CL:1000449!7.47e-13!16;CL:0000239!1.60e-11!3;CL:1000615!1.60e-11!3;CL:0002306!1.60e-11!3;CL:0002681!2.99e-09!13;CL:0002584!2.99e-09!13 | |ontology_enrichment_celltype=CL:1000497!8.16e-18!18;CL:0002518!8.16e-18!18;CL:0000181!1.25e-14!12;CL:0000417!1.25e-14!12;CL:0000668!1.25e-14!12;CL:0000414!1.25e-14!12;CL:0000412!1.25e-14!12;CL:0000182!1.25e-14!12;CL:1000507!1.23e-13!12;CL:1000494!1.23e-13!12;CL:1000449!7.47e-13!16;CL:0000239!1.60e-11!3;CL:1000615!1.60e-11!3;CL:0002306!1.60e-11!3;CL:0002681!2.99e-09!13;CL:0002584!2.99e-09!13 | ||
|ontology_enrichment_celltype_v019=CL:0000182;6.91e-22;12!CL:0000239;2.55e-10;3!CL:1000615;2.55e-10;3!CL:0002306;2.55e-10;3!CL:1000497;8.03e-07;17!CL:0002518;8.03e-07;17!CL:1000507;8.11e-07;10!CL:1000494;8.11e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,6.79e-22,12;CL:0000239,2.38e-10,3;CL:1000615,2.38e-10,3;CL:0002306,2.38e-10,3;CL:0000223,6.28e-07,58;CL:1000497,8.36e-07,17;CL:0002518,8.36e-07,17;CL:1000507,8.45e-07,10;CL:1000494,8.45e-07,10 | |||
|ontology_enrichment_development_v019=UBERON:0004161;2.10e-16;11!UBERON:0009497;7.42e-14;13!UBERON:0003104;1.05e-10;31 | |||
|ontology_enrichment_disease=DOID:4468!7.78e-08!2 | |ontology_enrichment_disease=DOID:4468!7.78e-08!2 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005172!8.98e-29!55;UBERON:0005173!8.98e-29!55;UBERON:0002417!2.38e-25!61;UBERON:0000916!2.38e-25!61;UBERON:0002113!3.71e-19!27;UBERON:0003918!3.71e-19!27;UBERON:0005095!3.71e-19!27;UBERON:0007687!3.71e-19!27;UBERON:0000489!1.08e-15!32;UBERON:0003887!1.48e-14!21;UBERON:0002107!1.65e-14!19;UBERON:0006925!1.65e-14!19;UBERON:0008836!1.65e-14!19;UBERON:0009854!2.74e-14!23;UBERON:0000080!3.67e-14!18;UBERON:0002120!3.67e-14!18;UBERON:0004875!3.67e-14!18;UBERON:0005721!3.67e-14!18;UBERON:0005754!3.67e-14!18;UBERON:0007297!3.67e-14!18;UBERON:0009773!1.23e-13!12;UBERON:0001231!1.23e-13!12;UBERON:0004810!1.23e-13!12;UBERON:0004211!7.47e-13!16;UBERON:0001285!7.47e-13!16;UBERON:0007684!7.47e-13!16;UBERON:0003220!7.47e-13!16;UBERON:0004208!7.47e-13!16;UBERON:0004876!1.41e-12!20;UBERON:0009856!2.14e-12!26;UBERON:0006554!2.27e-12!44;UBERON:0005057!2.66e-12!26;UBERON:0008835!2.77e-12!22;UBERON:0003894!2.77e-12!22;UBERON:0001008!5.02e-12!45;UBERON:0006555!5.12e-12!17;UBERON:0005103!5.12e-12!17;UBERON:0000083!5.12e-12!17;UBERON:0009201!5.12e-12!17;UBERON:0004819!5.12e-12!17;UBERON:0006553!5.12e-12!17;UBERON:0003074!5.12e-12!17;UBERON:0003060!5.12e-12!17;UBERON:0005177!5.99e-12!107;UBERON:0006853!1.60e-11!3;UBERON:0007685!1.60e-11!3;UBERON:0004134!1.60e-11!3;UBERON:0009569!5.09e-11!113;UBERON:0007499!1.35e-10!25;UBERON:0009497!1.35e-10!25;UBERON:0000015!1.35e-10!25;UBERON:0002423!1.35e-10!25;UBERON:0006235!1.35e-10!25;UBERON:0004161!1.35e-10!25;UBERON:0000058!2.71e-09!26;UBERON:0005409!2.95e-09!35;UBERON:0001225!2.99e-09!13;UBERON:0008987!2.99e-09!13;UBERON:0000160!1.75e-08!27;UBERON:0002365!3.30e-08!31;UBERON:0002330!3.30e-08!31;UBERON:0003103!6.52e-08!69;UBERON:0000059!7.11e-08!11;UBERON:0003064!1.86e-07!37;UBERON:0001851!2.18e-07!16;UBERON:0002368!4.48e-07!35;UBERON:0000353!6.48e-07!17;UBERON:0004921!6.49e-07!129;UBERON:0004185!6.49e-07!129 | |ontology_enrichment_uberon=UBERON:0005172!8.98e-29!55;UBERON:0005173!8.98e-29!55;UBERON:0002417!2.38e-25!61;UBERON:0000916!2.38e-25!61;UBERON:0002113!3.71e-19!27;UBERON:0003918!3.71e-19!27;UBERON:0005095!3.71e-19!27;UBERON:0007687!3.71e-19!27;UBERON:0000489!1.08e-15!32;UBERON:0003887!1.48e-14!21;UBERON:0002107!1.65e-14!19;UBERON:0006925!1.65e-14!19;UBERON:0008836!1.65e-14!19;UBERON:0009854!2.74e-14!23;UBERON:0000080!3.67e-14!18;UBERON:0002120!3.67e-14!18;UBERON:0004875!3.67e-14!18;UBERON:0005721!3.67e-14!18;UBERON:0005754!3.67e-14!18;UBERON:0007297!3.67e-14!18;UBERON:0009773!1.23e-13!12;UBERON:0001231!1.23e-13!12;UBERON:0004810!1.23e-13!12;UBERON:0004211!7.47e-13!16;UBERON:0001285!7.47e-13!16;UBERON:0007684!7.47e-13!16;UBERON:0003220!7.47e-13!16;UBERON:0004208!7.47e-13!16;UBERON:0004876!1.41e-12!20;UBERON:0009856!2.14e-12!26;UBERON:0006554!2.27e-12!44;UBERON:0005057!2.66e-12!26;UBERON:0008835!2.77e-12!22;UBERON:0003894!2.77e-12!22;UBERON:0001008!5.02e-12!45;UBERON:0006555!5.12e-12!17;UBERON:0005103!5.12e-12!17;UBERON:0000083!5.12e-12!17;UBERON:0009201!5.12e-12!17;UBERON:0004819!5.12e-12!17;UBERON:0006553!5.12e-12!17;UBERON:0003074!5.12e-12!17;UBERON:0003060!5.12e-12!17;UBERON:0005177!5.99e-12!107;UBERON:0006853!1.60e-11!3;UBERON:0007685!1.60e-11!3;UBERON:0004134!1.60e-11!3;UBERON:0009569!5.09e-11!113;UBERON:0007499!1.35e-10!25;UBERON:0009497!1.35e-10!25;UBERON:0000015!1.35e-10!25;UBERON:0002423!1.35e-10!25;UBERON:0006235!1.35e-10!25;UBERON:0004161!1.35e-10!25;UBERON:0000058!2.71e-09!26;UBERON:0005409!2.95e-09!35;UBERON:0001225!2.99e-09!13;UBERON:0008987!2.99e-09!13;UBERON:0000160!1.75e-08!27;UBERON:0002365!3.30e-08!31;UBERON:0002330!3.30e-08!31;UBERON:0003103!6.52e-08!69;UBERON:0000059!7.11e-08!11;UBERON:0003064!1.86e-07!37;UBERON:0001851!2.18e-07!16;UBERON:0002368!4.48e-07!35;UBERON:0000353!6.48e-07!17;UBERON:0004921!6.49e-07!129;UBERON:0004185!6.49e-07!129 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;1.08e-23;19!UBERON:0006925;1.08e-23;19!UBERON:0002423;9.60e-18;25!UBERON:0002365;1.34e-13;31!UBERON:0002330;1.34e-13;31!UBERON:0005172;1.87e-13;52!UBERON:0005173;1.87e-13;52!UBERON:0002368;5.23e-12;33!UBERON:0006853;2.55e-10;3!UBERON:0007685;2.55e-10;3!UBERON:0004134;2.55e-10;3!UBERON:0002417;4.61e-10;58!UBERON:0000916;4.61e-10;58!UBERON:0000949;7.48e-09;43!UBERON:0002113;3.70e-07;24!UBERON:0011143;3.70e-07;24!UBERON:0004211;8.11e-07;10!UBERON:0009773;8.11e-07;10!UBERON:0001231;8.11e-07;10!UBERON:0004810;8.11e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.05e-23,19;UBERON:0006925,1.05e-23,19;UBERON:0008836,1.05e-23,19;UBERON:0008835,2.52e-20,22;UBERON:0003894,2.52e-20,22;UBERON:0005172,4.05e-20,54;UBERON:0005173,4.05e-20,54;UBERON:0009854,2.15e-19,23;UBERON:0002417,7.26e-18,60;UBERON:0000916,7.26e-18,60;UBERON:0007499,9.39e-18,25;UBERON:0009497,9.39e-18,25;UBERON:0000015,9.39e-18,25;UBERON:0002423,9.39e-18,25;UBERON:0006235,9.39e-18,25;UBERON:0004161,9.39e-18,25;UBERON:0009856,4.99e-17,26;UBERON:0002365,4.22e-14,31;UBERON:0002330,4.22e-14,31;UBERON:0002368,2.33e-12,35;UBERON:0006853,2.38e-10,3;UBERON:0007685,2.38e-10,3;UBERON:0004134,2.38e-10,3;UBERON:0005177,1.24e-09,101;UBERON:0003929,1.51e-09,54;UBERON:0000949,2.32e-09,45;UBERON:0009569,1.87e-08,112;UBERON:0002530,7.16e-07,59;UBERON:0004810,8.45e-07,10 | |||
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|short_description=p@chr1:155274590..155274615,+ | |short_description=p@chr1:155274590..155274615,+ | ||
}} | }} |
Latest revision as of 22:16, 27 July 2015
Short description: | p@chr1:155274590..155274615, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr1:155274590..155274615, + |
Coexpression cluster: | C783_argyrophil_Hepatocyte_liver_gastrointestinal_hepatocellular_adenocarcinoma_Intestinal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 6.79e-22 | 12 |
brush border epithelial cell | 2.38e-10 | 3 |
kidney cortex tubule cell | 2.38e-10 | 3 |
epithelial cell of proximal tubule | 2.38e-10 | 3 |
endodermal cell | 6.28e-07 | 58 |
kidney cell | 8.36e-07 | 17 |
kidney epithelial cell | 8.36e-07 | 17 |
kidney tubule cell | 8.45e-07 | 10 |
nephron tubule epithelial cell | 8.45e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
liver | 1.05e-23 | 19 |
digestive gland | 1.05e-23 | 19 |
liver bud | 1.05e-23 | 19 |
hepatic diverticulum | 2.52e-20 | 22 |
liver primordium | 2.52e-20 | 22 |
abdomen element | 4.05e-20 | 54 |
abdominal segment element | 4.05e-20 | 54 |
digestive tract diverticulum | 2.15e-19 | 23 |
abdominal segment of trunk | 7.26e-18 | 60 |
abdomen | 7.26e-18 | 60 |
epithelial sac | 9.39e-18 | 25 |
epithelium of foregut-midgut junction | 9.39e-18 | 25 |
anatomical boundary | 9.39e-18 | 25 |
hepatobiliary system | 9.39e-18 | 25 |
foregut-midgut junction | 9.39e-18 | 25 |
septum transversum | 9.39e-18 | 25 |
sac | 4.99e-17 | 26 |
exocrine gland | 4.22e-14 | 31 |
exocrine system | 4.22e-14 | 31 |
endocrine gland | 2.33e-12 | 35 |
renal cortex tubule | 2.38e-10 | 3 |
region of nephron tubule | 2.38e-10 | 3 |
proximal tubule | 2.38e-10 | 3 |
trunk region element | 1.24e-09 | 101 |
gut epithelium | 1.51e-09 | 54 |
endocrine system | 2.32e-09 | 45 |
subdivision of trunk | 1.87e-08 | 112 |
gland | 7.16e-07 | 59 |
nephron tubule epithelium | 8.45e-07 | 10 |