FFCP PHASE1:Hg19::chr19:7990260..7990308,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:7990260..7990308,+ to FFCP PHASE1:Hg19::chr19:7990260..7990308,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr19:7990260..7990308,+ | |||
|coexpression_cluster_id=C2506 | |||
|description=CAGE_peak_at_chr19:7990260..7990308,+ | |||
|id=chr19:7990260..7990308,+ | |||
|ontology_enrichment_celltype=CL:0000133!8.58e-10!59;CL:0002319!1.42e-09!25;CL:0000221!3.61e-08!71 | |||
|ontology_enrichment_celltype_v019=CL:0002319;1.95e-13;25!CL:0002321;3.93e-11;15!CL:0000540;1.08e-09;6!CL:0000404;1.08e-09;6!CL:0002322;7.15e-09;5!CL:0000333;7.07e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,2.97e-13,25;CL:0000047,4.88e-13,8;CL:0000133,7.39e-12,59;CL:0000540,1.12e-09,6;CL:0000031,1.12e-09,6;CL:0000404,1.12e-09,6;CL:0002322,9.95e-09,5;CL:0000221,1.55e-08,72 | |||
|ontology_enrichment_development_v019=CL:0000031;1.08e-09;6!UBERON:0006601;2.69e-07;82!UBERON:0006238;3.38e-07;10!CL:0000133;3.80e-07;59 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:171;5.34e-07;10 | |||
|ontology_enrichment_disease_v019_2=DOID:171,3.24e-07,10;DOID:169,9.14e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.53e-28!94;UBERON:0001016!1.53e-28!94;UBERON:0005743!6.82e-28!86;UBERON:0001017!8.33e-28!82;UBERON:0000955!2.79e-22!69;UBERON:0006238!2.79e-22!69;UBERON:0002780!4.02e-20!41;UBERON:0001890!4.02e-20!41;UBERON:0006240!4.02e-20!41;UBERON:0002346!5.55e-20!90;UBERON:0001049!7.19e-20!57;UBERON:0005068!7.19e-20!57;UBERON:0006241!7.19e-20!57;UBERON:0007135!7.19e-20!57;UBERON:0003080!3.50e-19!42;UBERON:0003075!3.53e-19!86;UBERON:0007284!3.53e-19!86;UBERON:0001869!3.68e-19!32;UBERON:0002020!5.36e-19!34;UBERON:0003528!5.36e-19!34;UBERON:0001893!9.62e-19!34;UBERON:0002791!4.54e-18!33;UBERON:0002616!4.93e-18!59;UBERON:0003056!2.67e-17!61;UBERON:0000924!6.56e-16!173;UBERON:0006601!6.56e-16!173;UBERON:0004121!3.85e-15!169;UBERON:0000956!1.78e-14!25;UBERON:0000203!1.78e-14!25;UBERON:0002619!3.42e-13!22;UBERON:0000033!5.80e-13!123;UBERON:0001950!5.02e-12!20;UBERON:0000153!2.05e-11!129;UBERON:0007811!2.05e-11!129;UBERON:0000025!2.03e-10!194;UBERON:0004111!4.35e-08!241;UBERON:0000119!3.78e-07!312;UBERON:0000483!4.08e-07!309;UBERON:0000477!6.20e-07!286 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;3.82e-25;32!UBERON:0003528;2.16e-24;34!UBERON:0002020;2.16e-24;34!UBERON:0002791;3.34e-23;32!UBERON:0001893;4.02e-23;34!UBERON:0000956;5.37e-20;25!UBERON:0000203;5.37e-20;25!UBERON:0002619;7.68e-19;22!UBERON:0001950;2.37e-18;20!UBERON:0002780;1.42e-17;41!UBERON:0001890;1.42e-17;41!UBERON:0000955;3.24e-14;68!UBERON:0000073;3.43e-13;53!UBERON:0002616;3.43e-13;53!UBERON:0001017;1.58e-12;75!UBERON:0001016;9.08e-12;83!UBERON:0002420;8.82e-10;9!UBERON:0007245;8.82e-10;9!UBERON:0010009;8.82e-10;9!UBERON:0010011;8.82e-10;9!UBERON:0000454;8.82e-10;9!UBERON:0001871;5.01e-09;6!UBERON:0000369;1.36e-08;4!UBERON:0002435;1.36e-08;4!UBERON:0000204;1.36e-08;4!UBERON:0000013;7.07e-08;5!UBERON:0002410;7.07e-08;5!UBERON:0000200;1.23e-07;6!UBERON:0000125;3.75e-07;9!UBERON:0002308;3.75e-07;9!UBERON:0009663;4.41e-07;7!UBERON:0005383;6.21e-07;3!UBERON:0005382;6.21e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.51e-37,89;UBERON:0001017,4.86e-34,81;UBERON:0001869,2.74e-28,32;UBERON:0002780,3.05e-26,41;UBERON:0001890,3.05e-26,41;UBERON:0003080,3.05e-26,41;UBERON:0006240,3.05e-26,41;UBERON:0001893,3.43e-26,34;UBERON:0003528,6.38e-26,34;UBERON:0002020,6.38e-26,34;UBERON:0000955,7.05e-26,68;UBERON:0006238,7.05e-26,68;UBERON:0002791,8.44e-26,32;UBERON:0000073,5.78e-23,53;UBERON:0002616,5.78e-23,53;UBERON:0001049,3.11e-21,56;UBERON:0005068,3.11e-21,56;UBERON:0006241,3.11e-21,56;UBERON:0007135,3.11e-21,56;UBERON:0000956,3.34e-20,25;UBERON:0000203,3.34e-20,25;UBERON:0003056,4.33e-20,61;UBERON:0002619,3.96e-19,22;UBERON:0004121,8.79e-19,171;UBERON:0000924,8.79e-19,171;UBERON:0006601,8.79e-19,171;UBERON:0001950,1.25e-18,20;UBERON:0002346,1.22e-16,86;UBERON:0003075,1.27e-15,82;UBERON:0007284,1.27e-15,82;UBERON:0011216,2.39e-15,223;UBERON:0010371,6.85e-12,104;UBERON:0007023,3.03e-11,114;UBERON:0002420,6.42e-10,9;UBERON:0007245,6.42e-10,9;UBERON:0010009,6.42e-10,9;UBERON:0010011,6.42e-10,9;UBERON:0000454,6.42e-10,9;UBERON:0010314,1.51e-09,132;UBERON:0001871,4.07e-09,6;UBERON:0000025,1.32e-08,192;UBERON:0000369,1.35e-08,4;UBERON:0002435,1.35e-08,4;UBERON:0000204,1.35e-08,4;UBERON:0010082,1.35e-08,4;UBERON:0000013,3.22e-08,5;UBERON:0002410,3.22e-08,5;UBERON:0000200,1.68e-07,6;UBERON:0000125,3.65e-07,9;UBERON:0002308,3.65e-07,9;UBERON:0009663,4.51e-07,7;UBERON:0000922,4.94e-07,592;UBERON:0005383,6.04e-07,3;UBERON:0005382,6.04e-07,3 | |||
|phase1_expression=0,0.214100523890983,0.140954404095971,0,0,0,0,0,0,0.245733936501509,0.697801167972428,0,0,0.247532705920093,0,2.01697543935533,1.20538905604795,0.730310090387373,0,0.861847406537515,0.204000691244253,1.88072832886853,1.43117993565528,1.09499540058307,0.753255837568817,0,0,0,0,0,0,0,0.30120591877825,0,0,0.710846162437108,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289803085735052,0,0,0,0,0,0,0,0.318565414324097,0,0,0,0,0,0,0,0.201606743224732,0.802320587350522,0.144824403882799,0,0,0.12786256184353,0,0,0.144846518960824,0,0,1.22895262313288,0.886917589850256,1.14185221401064,1.76821751921912,0.364295288292542,0.370784442784429,0,0,0,0,0,0,0.993812036833525,0.860234595106124,0.694281003215189,2.82653970962005,0.838998872419812,3.02629846134074,0.835979866147242,0.258416759169329,0,0.33472061276467,0,0,0.24406205754817,0,7.29127753093584,0.17859945656816,0,0,0,1.89853131913626,1.28241220751285,0,0,0,0,0.12663051166458,0.662045904066094,0,0,0.560677600142307,0,3.94668077467456,0.311211035399766,0,0,0.302714855289863,0.576175924479999,0,0,0,0.149448680551801,0,0,0.140450806702248,0,0.491337269247072,0.103325781175765,0,0,0,0,0.168336113954066,0.250237039743928,0,0,0.30648779579902,0,0.340296549480063,0.179389635688862,0,0,0,0.103052529238439,0.257640540045629,0.18611685633159,0,0,0,0.0920498986422993,0.323292113637624,0,0.10075209822764,0.169560592310488,0,0,0,2.07355300420312,3.97589304964456,2.09149097165133,3.10983165046111,2.27088765788066,6.56959246336494,0,0,0,0,0,0,0.337169380156203,0.241011029883482,0.330881918197182,0,0,0.269662616320329,0,0,0,1.40241773803446,1.2347220339942,0,0,0,0,0,0.245976877086227,0.171567810298526,0.219500570817251,0,0.100528972411631,0.185176890317059,0,0,0,1.507095264676,0.70445216541493,0.144366447761074,0,0.570762456703795,1.58040879591855,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0.063497894292169,0.763976851116555,0,0,0.616964956219941,0,0,0.224262168690721,0,0.2933531432838,0.129271715757778,0,0,0.26593811658487,0,0,0,0,0.142977993658148,0,0,0,0,0,0.301439377059586,0,0.699810938274399,0,0,0,0.718874566474748,2.29723871668228,1.42636905040718,0.144781306667579,0,0,0,0.591092280605782,0.431255149719035,1.02674429023799,4.8277978602268,7.8083912314573,1.54657762555539,6.03058555203656,6.37938751653163,0,0,0,0,0.500170521059677,0,0.831883446123229,0.713715955188647,0.788512075169673,0.937131319941706,0.300946099727719,0,0,0.664225598535437,0,0.0868836144680828,0.587403472388222,0.686286847621712,0,0.215714200818617,0.106727557803444,0,0,0,0,0,0,0.640695746278505,0,0.482561763430822,0,0,0,0,0,0.116210378459959,0,0,0,0.114814448164607,0,0.131124414959424,0.451199612907412,0.231046011313244,0.784349769176855,2.92278449306521,0.527758144464379,0,0.340187410553031,0,0,0.541892875087706,1.50506932156456,0,0,0.447749509444357,0,0,0,2.29610251989794,0.650756789328606,0,0.824125183365091,0.165018999841176,0,0.650060246036521,0,0.193341436584244,0,0.15350367472613,0.137836572484531,0.214840489736547,0,0,0.623224249527161,0.165284915360978,0.192190067365106,0.127612712494584,0.10115778085555,0.464845549297286,0,0,0,0,0.869932992075073,0.37064843820784,0,0,0,0,0,0,0.318203247925937,0,0.359744915166629,0,0,0.404364963146632,3.17020642346017,0,0,0,0,0.272999822815972,0.141405431953713,0,0.551365343546124,0,0,0,0,0.202910376962704,0.30982349809975,0.845086807596724,0,0,0.7133421029625,0.354761064070598,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38871292465715,0.962479855263359,0,0.185803175125719,0.577076851905779,0.355709216742071,0.956557636372934,0.199579371432817,0.191505370132367,0.211673582723883,0.324621940274555,0,0.228234679033192,0,0,0.338583555603207,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,0.18714054040822,0,3.51945513073589,0,1.13654458722565,0,0,0,7.95318118213038,1.82870241333667,0,0,6.3337622438398,0,0.276283915531148,0,0.409074730008619,0.246169610922139,0,0,0,0,2.17015492401254,0,0,7.75466196876175,3.89626012279775,13.9729658600836,0.7812832832557,0.437299999980979,0,0,1.01701460117107,0,0.689486746482929,0.874813840149763,0.868124974666461,21.2577932595321,5.54743617676877,0,0.110579259931225,0,3.51016635446356,0,0,1.23120413606075,0,0,0,0,0,0.366390373607449,0,0,0,0,0.225595660617181,0.19606253431774,0.839107934879214,0.37950746544837,0,0.210998064528027,0.326465616318295,0,0.216388639742091,0,0.442287822516696,0.611030144933625,0,0.741383633679017,0.313265848516366,0.202203398942031,0,4.68528891450678,0.364909578431332,0,0.242780379534093,2.36750641709634,0,7.03967351750127,0.126373159256976,1.20258735531594,0.103688191397247,0.664653872707185,0.992975867626496,0.941798755221676,0,0.284609546029793,0.554698692052555,1.38847790668105,0,0.0870592065804026,1.04836000945218,0.343972064943233,0.19351266257817,0,0.164230914106418,0.484945082442097,1.94163478721301,0.90392296312213,0.822251547880505,0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| ||
|short_description=p@chr19:7990260..7990308,+ | |||
}} | }} |
Latest revision as of 18:35, 27 July 2015
Short description: | p@chr19:7990260..7990308, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:7990260..7990308, + |
Coexpression cluster: | C2506_putamen_caudate_nucleus_temporal_amygdala_insula_frontal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 2.97e-13 | 25 |
neuronal stem cell | 4.88e-13 | 8 |
neurectodermal cell | 7.39e-12 | 59 |
neuron | 1.12e-09 | 6 |
neuroblast | 1.12e-09 | 6 |
electrically signaling cell | 1.12e-09 | 6 |
embryonic stem cell | 9.95e-09 | 5 |
ectodermal cell | 1.55e-08 | 72 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 3.24e-07 | 10 |
neuroendocrine tumor | 9.14e-07 | 6 |