FFCP PHASE1:Hg19::chr17:38643475..38643497,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:38643475..38643497,+ | |||
|coexpression_cluster_id=C918 | |||
|description=CAGE_peak_at_chr17:38643475..38643497,+ | |description=CAGE_peak_at_chr17:38643475..38643497,+ | ||
|id=chr17:38643475..38643497,+ | |id=chr17:38643475..38643497,+ | ||
|ontology_enrichment_celltype=CL:0000066!3.73e-28!254;CL:0002076!3.29e-23!43;CL:0000223!1.20e-17!59;CL:0002368!4.28e-14!13;CL:0002251!2.66e-11!21;CL:0002159!7.07e-10!13;CL:0000244!9.27e-10!4;CL:0000731!9.27e-10!4;CL:0002202!2.13e-07!9;CL:0002632!2.13e-07!9;CL:0000349!2.38e-07!3;CL:0002577!2.38e-07!3;CL:0002541!2.94e-07!3;CL:0000622!6.82e-07!5;CL:0002328!7.16e-07!3 | |ontology_enrichment_celltype=CL:0000066!3.73e-28!254;CL:0002076!3.29e-23!43;CL:0000223!1.20e-17!59;CL:0002368!4.28e-14!13;CL:0002251!2.66e-11!21;CL:0002159!7.07e-10!13;CL:0000244!9.27e-10!4;CL:0000731!9.27e-10!4;CL:0002202!2.13e-07!9;CL:0002632!2.13e-07!9;CL:0000349!2.38e-07!3;CL:0002577!2.38e-07!3;CL:0002541!2.94e-07!3;CL:0000622!6.82e-07!5;CL:0002328!7.16e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000244;5.92e-20;4!CL:0000731;5.92e-20;4!CL:0000349;4.68e-19;19!CL:0002577;1.62e-14;3!CL:0002159;2.88e-12;14!CL:0002327;3.79e-12;4!CL:0002076;2.14e-11;42!CL:0000575;3.67e-11;2!CL:0002536;5.33e-11;2!CL:0000240;2.45e-08;6!CL:0000311;2.45e-08;6!CL:0000079;2.45e-08;6!CL:0000237;2.45e-08;6!CL:0002231;1.13e-07;3!CL:0002541;2.65e-07;3!CL:0002166;4.13e-07;3!CL:0002623;4.13e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000244,5.13e-20,4;CL:0000731,5.13e-20,4;CL:0000349,4.76e-19,19;CL:0000066,5.76e-15,253;CL:0002577,1.35e-14,3;CL:0002159,3.07e-12,14;CL:0002327,3.67e-12,4;CL:0002076,1.11e-11,42;CL:0000575,4.06e-11,2;CL:0002536,4.49e-11,2;CL:0000240,2.48e-08,6;CL:0000311,2.48e-08,6;CL:0000079,2.48e-08,6;CL:0000237,2.48e-08,6;CL:0000036,2.48e-08,6;CL:0000357,2.48e-08,6;CL:0000114,2.48e-08,6;CL:0000223,7.01e-08,58;CL:0002231,1.22e-07,3;CL:0002541,3.53e-07,3;CL:0002166,4.27e-07,3;CL:0002623,5.47e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000357;2.45e-08;6!CL:0000114;2.45e-08;6 | |||
|ontology_enrichment_disease=DOID:305!2.27e-13!106;DOID:1749!2.60e-09!14;DOID:0050687!2.26e-08!143 | |ontology_enrichment_disease=DOID:305!2.27e-13!106;DOID:1749!2.60e-09!14;DOID:0050687!2.26e-08!143 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!2.30e-27!169;UBERON:0000925!2.30e-27!169;UBERON:0006595!2.30e-27!169;UBERON:0001004!5.63e-24!72;UBERON:0005631!2.33e-20!14;UBERON:0000158!2.33e-20!14;UBERON:0000065!4.91e-18!53;UBERON:0000077!7.58e-18!130;UBERON:0001737!6.08e-17!9;UBERON:0001007!2.40e-16!155;UBERON:0001555!2.40e-16!155;UBERON:0007026!2.40e-16!155;UBERON:0000161!3.27e-15!35;UBERON:0003124!1.50e-14!7;UBERON:0004921!1.79e-14!129;UBERON:0004185!1.79e-14!129;UBERON:0000072!1.82e-14!46;UBERON:0008947!1.03e-13!38;UBERON:0003258!1.03e-13!38;UBERON:0001041!2.54e-12!98;UBERON:0001557!2.78e-12!19;UBERON:0000365!2.74e-11!5;UBERON:0000478!1.50e-10!24;UBERON:0004923!1.86e-10!57;UBERON:0005153!3.82e-10!37;UBERON:0003729!6.39e-10!5;UBERON:0005157!1.31e-09!51;UBERON:0005910!2.59e-09!6;UBERON:0000344!3.06e-09!12;UBERON:0005911!3.20e-09!82;UBERON:0000166!3.79e-09!21;UBERON:0001987!5.83e-09!4;UBERON:0004340!5.83e-09!4;UBERON:0000064!2.33e-08!219;UBERON:0003102!2.58e-08!95;UBERON:0000305!5.20e-08!7;UBERON:0003343!7.26e-08!4;UBERON:0004785!7.26e-08!4;UBERON:0000165!1.04e-07!28;UBERON:0000930!1.04e-07!28;UBERON:0007196!1.30e-07!14;UBERON:0001558!1.30e-07!14;UBERON:0000162!1.49e-07!14;UBERON:0001353!1.49e-07!14;UBERON:0000163!1.49e-07!14;UBERON:0006866!1.49e-07!14;UBERON:0000164!1.49e-07!14;UBERON:0000931!1.49e-07!14;UBERON:0002530!2.93e-07!59;UBERON:0000476!2.94e-07!3;UBERON:0000920!2.94e-07!3;UBERON:0000062!5.46e-07!511;UBERON:0004122!5.89e-07!15;UBERON:0004871!6.16e-07!8;UBERON:0004815!7.16e-07!3;UBERON:0002031!7.16e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;2.74e-17;10!UBERON:0000158;2.74e-17;10!UBERON:0000365;5.38e-16;5!UBERON:0000478;9.29e-15;24!UBERON:0005910;2.38e-13;6!UBERON:0001911;3.79e-12;4!UBERON:0000305;1.03e-11;7!UBERON:0001987;5.10e-11;4!UBERON:0000486;6.02e-10;12!UBERON:0003124;2.65e-07;3!UBERON:0000920;2.65e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.07e-26,14;UBERON:0000158,2.07e-26,14;UBERON:0003124,1.59e-16,7;UBERON:0000365,4.81e-16,5;UBERON:0000478,9.40e-15,24;UBERON:0005910,2.16e-13,6;UBERON:0001911,3.67e-12,4;UBERON:0005333,3.67e-12,4;UBERON:0008425,3.67e-12,4;UBERON:0005311,3.67e-12,4;UBERON:0000305,9.13e-12,7;UBERON:0001987,4.44e-11,4;UBERON:0004340,4.44e-11,4;UBERON:0004871,2.65e-10,8;UBERON:0004119,2.89e-08,160;UBERON:0000925,2.89e-08,160;UBERON:0006595,2.89e-08,160;UBERON:0000920,3.53e-07,3;UBERON:0006554,8.10e-07,47 | |||
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| ||
|short_description=p@chr17:38643475..38643497,+ | |short_description=p@chr17:38643475..38643497,+ | ||
}} | }} |
Latest revision as of 16:30, 25 July 2015
Short description: | p@chr17:38643475..38643497, + |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:38643475..38643497, + |
Coexpression cluster: | C918_Keratinocyte_Mammary_Prostate_Urothelial_salivary_Corneal_Sebocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
transitional epithelial cell | 5.13e-20 | 4 |
urothelial cell | 5.13e-20 | 4 |
extraembryonic cell | 4.76e-19 | 19 |
epithelial cell | 5.76e-15 | 253 |
placental epithelial cell | 1.35e-14 | 3 |
general ecto-epithelial cell | 3.07e-12 | 14 |
mammary gland epithelial cell | 3.67e-12 | 4 |
endo-epithelial cell | 1.11e-11 | 42 |
corneal epithelial cell | 4.06e-11 | 2 |
amniotic epithelial cell | 4.49e-11 | 2 |
stratified squamous epithelial cell | 2.48e-08 | 6 |
keratin accumulating cell | 2.48e-08 | 6 |
stratified epithelial cell | 2.48e-08 | 6 |
keratinizing barrier epithelial cell | 2.48e-08 | 6 |
epithelial fate stem cell | 2.48e-08 | 6 |
stratified epithelial stem cell | 2.48e-08 | 6 |
surface ectodermal cell | 2.48e-08 | 6 |
endodermal cell | 7.01e-08 | 58 |
epithelial cell of prostate | 1.22e-07 | 3 |
chorionic membrane mesenchymal stem cell | 3.53e-07 | 3 |
epithelial cell of Malassez | 4.27e-07 | 3 |
acinar cell of salivary gland | 5.47e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.07e-26 | 14 |
membranous layer | 2.07e-26 | 14 |
chorion | 1.59e-16 | 7 |
urothelium | 4.81e-16 | 5 |
extraembryonic structure | 9.40e-15 | 24 |
transitional epithelium | 2.16e-13 | 6 |
mammary gland | 3.67e-12 | 4 |
mammary bud | 3.67e-12 | 4 |
mammary ridge | 3.67e-12 | 4 |
mammary placode | 3.67e-12 | 4 |
amnion | 9.13e-12 | 7 |
placenta | 4.44e-11 | 4 |
allantois | 4.44e-11 | 4 |
somatic layer of lateral plate mesoderm | 2.65e-10 | 8 |
endoderm-derived structure | 2.89e-08 | 160 |
endoderm | 2.89e-08 | 160 |
presumptive endoderm | 2.89e-08 | 160 |
egg chorion | 3.53e-07 | 3 |
urinary system structure | 8.10e-07 | 47 |