FFCP PHASE1:Hg19::chr17:28550048..28550058,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:28550048..28550058,-
|short_description=p@chr17:28550048..28550058,-
|description=CAGE_peak_at_chr17:28550048..28550058,-
|association_with_transcript=NA
...") |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr17:28550048..28550058,- | |||
|coexpression_cluster_id=C894 | |||
|description=CAGE_peak_at_chr17:28550048..28550058,- | |||
|id=chr17:28550048..28550058,- | |||
|ontology_enrichment_celltype=CL:0000181!1.82e-24!12;CL:0000417!1.82e-24!12;CL:0000668!1.82e-24!12;CL:0000414!1.82e-24!12;CL:0000412!1.82e-24!12;CL:0000182!1.82e-24!12;CL:0002563!8.11e-19!4;CL:0000223!1.19e-14!59;CL:0002535!2.49e-10!2;CL:0002253!3.58e-10!2;CL:0002231!2.79e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000182;2.71e-30;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.99e-30,12;CL:0000223,6.40e-07,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;5.96e-33;11!UBERON:0009497;4.82e-28;13!UBERON:0001041;1.11e-12;30!UBERON:0003104;4.86e-12;31 | |||
|ontology_enrichment_disease=DOID:7!8.98e-08!39 | |||
|ontology_enrichment_disease_v019=DOID:7;1.89e-08;39 | |||
|ontology_enrichment_disease_v019_2=DOID:7,6.27e-10,39 | |||
|ontology_enrichment_uberon=UBERON:0001242!8.11e-19!4;UBERON:0001262!8.11e-19!4;UBERON:0004786!8.11e-19!4;UBERON:0004808!8.11e-19!4;UBERON:0001277!8.11e-19!4;UBERON:0000160!3.43e-16!27;UBERON:0003929!4.96e-16!54;UBERON:0002107!1.29e-15!19;UBERON:0006925!1.29e-15!19;UBERON:0008836!1.29e-15!19;UBERON:0003350!2.90e-15!5;UBERON:0008835!1.54e-13!22;UBERON:0003894!1.54e-13!22;UBERON:0004921!2.97e-13!129;UBERON:0004185!2.97e-13!129;UBERON:0009854!5.74e-13!23;UBERON:0005409!1.27e-12!35;UBERON:0007499!5.86e-12!25;UBERON:0009497!5.86e-12!25;UBERON:0000015!5.86e-12!25;UBERON:0002423!5.86e-12!25;UBERON:0006235!5.86e-12!25;UBERON:0004161!5.86e-12!25;UBERON:0005057!1.64e-11!26;UBERON:0009856!1.64e-11!26;UBERON:0001007!6.23e-11!155;UBERON:0001555!6.23e-11!155;UBERON:0007026!6.23e-11!155;UBERON:0005911!1.88e-10!82;UBERON:0006955!2.49e-10!2;UBERON:0004801!2.49e-10!2;UBERON:0004119!5.67e-10!169;UBERON:0000925!5.67e-10!169;UBERON:0006595!5.67e-10!169;UBERON:0002365!1.05e-09!31;UBERON:0002330!1.05e-09!31;UBERON:0000485!6.61e-09!9;UBERON:0001155!7.75e-09!9;UBERON:0002368!1.25e-08!35;UBERON:0002530!9.68e-08!59;UBERON:0000059!2.16e-07!11;UBERON:0000344!6.74e-07!12;UBERON:0000060!6.74e-07!12;UBERON:0000949!9.06e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0002108;1.44e-32;4!UBERON:0002107;1.68e-19;19!UBERON:0006925;1.68e-19;19!UBERON:0002423;4.84e-15;25!UBERON:0002365;1.11e-12;31!UBERON:0002330;1.11e-12;31!UBERON:0002368;4.05e-10;33!UBERON:0000160;7.42e-10;17!UBERON:0000949;1.88e-08;43!UBERON:0005409;6.29e-08;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002108,1.23e-32,4;UBERON:0002107,1.79e-19,19;UBERON:0006925,1.79e-19,19;UBERON:0008836,1.79e-19,19;UBERON:0008835,6.04e-17,22;UBERON:0003894,6.04e-17,22;UBERON:0009854,3.01e-16,23;UBERON:0007499,5.08e-15,25;UBERON:0009497,5.08e-15,25;UBERON:0000015,5.08e-15,25;UBERON:0002423,5.08e-15,25;UBERON:0006235,5.08e-15,25;UBERON:0004161,5.08e-15,25;UBERON:0009856,1.78e-14,26;UBERON:0002365,2.79e-12,31;UBERON:0002330,2.79e-12,31;UBERON:0002368,5.68e-11,35;UBERON:0000160,7.10e-10,17;UBERON:0004921,6.01e-09,118;UBERON:0000949,1.04e-08,45;UBERON:0001007,2.16e-07,145;UBERON:0001555,2.16e-07,145;UBERON:0007026,2.16e-07,145;UBERON:0003929,2.22e-07,54;UBERON:0005172,2.22e-07,54;UBERON:0005173,2.22e-07,54;UBERON:0005409,3.90e-07,25;UBERON:0002530,8.16e-07,59;UBERON:0004119,9.48e-07,160;UBERON:0000925,9.48e-07,160;UBERON:0006595,9.48e-07,160 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.983907508344908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604297247958111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.755798243562828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.424059214301822,0,0,0.442287822516696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.32991899054908,1.02418136999391,0.576911008668165,1.21326378937533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.16414048242573,1.31135736302374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.983907508344908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.604297247958111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.755798243562828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.424059214301822,0,0,0.442287822516696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.32991899054908,1.02418136999391,0.576911008668165,1.21326378937533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.16414048242573,1.31135736302374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr17:28550048..28550058,- | |||
}} | }} |
Latest revision as of 15:14, 25 July 2015
Short description: | p@chr17:28550048..28550058, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:28550048..28550058, - |
Coexpression cluster: | C894_small_hepatoblastoma_colon_hepatocellular_liver_Intestinal_Prostate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.99e-30 | 12 |
endodermal cell | 6.40e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
small intestine | 1.23e-32 | 4 |
liver | 1.79e-19 | 19 |
digestive gland | 1.79e-19 | 19 |
liver bud | 1.79e-19 | 19 |
hepatic diverticulum | 6.04e-17 | 22 |
liver primordium | 6.04e-17 | 22 |
digestive tract diverticulum | 3.01e-16 | 23 |
epithelial sac | 5.08e-15 | 25 |
epithelium of foregut-midgut junction | 5.08e-15 | 25 |
anatomical boundary | 5.08e-15 | 25 |
hepatobiliary system | 5.08e-15 | 25 |
foregut-midgut junction | 5.08e-15 | 25 |
septum transversum | 5.08e-15 | 25 |
sac | 1.78e-14 | 26 |
exocrine gland | 2.79e-12 | 31 |
exocrine system | 2.79e-12 | 31 |
endocrine gland | 5.68e-11 | 35 |
intestine | 7.10e-10 | 17 |
subdivision of digestive tract | 6.01e-09 | 118 |
endocrine system | 1.04e-08 | 45 |
digestive system | 2.16e-07 | 145 |
digestive tract | 2.16e-07 | 145 |
primitive gut | 2.16e-07 | 145 |
gut epithelium | 2.22e-07 | 54 |
abdomen element | 2.22e-07 | 54 |
abdominal segment element | 2.22e-07 | 54 |
gastrointestinal system | 3.90e-07 | 25 |
gland | 8.16e-07 | 59 |
endoderm-derived structure | 9.48e-07 | 160 |
endoderm | 9.48e-07 | 160 |
presumptive endoderm | 9.48e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
disease of anatomical entity | 6.27e-10 | 39 |