FFCP PHASE1:Hg19::chr16:76269298..76269317,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr16:76269298..76269317,+ | |||
|description=CAGE_peak_at_chr16:76269298..76269317,+ | |description=CAGE_peak_at_chr16:76269298..76269317,+ | ||
|id=chr16:76269298..76269317,+ | |id=chr16:76269298..76269317,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0008947;7.71e-37;29 | |||
|ontology_enrichment_disease=DOID:305!1.09e-15!106;DOID:162!1.27e-12!235;DOID:14566!2.87e-12!239;DOID:0050687!2.88e-12!143;DOID:1325!1.40e-09!7;DOID:3904!1.40e-09!7;DOID:0050619!1.05e-08!1;DOID:1357!1.05e-08!1;DOID:0050615!2.94e-07!16;DOID:4362!8.82e-07!5 | |ontology_enrichment_disease=DOID:305!1.09e-15!106;DOID:162!1.27e-12!235;DOID:14566!2.87e-12!239;DOID:0050687!2.88e-12!143;DOID:1325!1.40e-09!7;DOID:3904!1.40e-09!7;DOID:0050619!1.05e-08!1;DOID:1357!1.05e-08!1;DOID:0050615!2.94e-07!16;DOID:4362!8.82e-07!5 | ||
|ontology_enrichment_disease_v019=DOID:0050619;7.88e-13;1!DOID:1357;7.88e-13;1!DOID:4362;4.06e-10;5!DOID:1325;2.91e-07;7!DOID:3904;2.91e-07;7!DOID:3910;5.26e-07;2!DOID:0050615;7.31e-07;16 | |||
|ontology_enrichment_disease_v019_2=DOID:305,8.80e-16,106;DOID:0050687,3.78e-13,143;DOID:0050619,7.89e-13,1;DOID:1357,7.89e-13,1;DOID:162,2.15e-11,235;DOID:14566,4.13e-11,239;DOID:4362,3.97e-10,5;DOID:1325,2.77e-07,7;DOID:3904,2.77e-07,7;DOID:3910,5.41e-07,2;DOID:0050615,7.09e-07,16 | |||
|ontology_enrichment_uberon=UBERON:0001737!3.95e-62!9;UBERON:0001557!9.84e-29!19;UBERON:0008947!1.84e-24!38;UBERON:0003258!1.84e-24!38;UBERON:0000072!8.03e-20!46;UBERON:0000065!6.56e-17!53;UBERON:0001004!4.24e-14!72;UBERON:0001041!1.25e-09!98;UBERON:0001764!1.05e-08!1;UBERON:0001825!1.05e-08!1;UBERON:0001007!2.83e-08!155;UBERON:0001555!2.83e-08!155;UBERON:0007026!2.83e-08!155;UBERON:0000063!3.08e-08!97;UBERON:0000077!7.18e-08!130;UBERON:0001048!1.83e-07!168;UBERON:0004119!2.43e-07!169;UBERON:0000925!2.43e-07!169;UBERON:0006595!2.43e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.24e-77;9!UBERON:0001557;1.24e-77;9!UBERON:0000072;1.48e-24;37!UBERON:0000065;1.12e-19;44!UBERON:0001764;7.88e-13;1!UBERON:0001825;7.88e-13;1!UBERON:0001004;7.01e-12;65!UBERON:0000002;1.42e-08;6!UBERON:0001560;1.42e-08;6!UBERON:0004903;5.26e-07;2!UBERON:0002173;5.26e-07;2!UBERON:0002186;5.26e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.51e-77,9;UBERON:0001557,2.15e-36,19;UBERON:0008947,7.90e-28,38;UBERON:0003258,7.90e-28,38;UBERON:0000072,2.89e-22,47;UBERON:0000065,3.23e-19,54;UBERON:0001004,1.12e-16,74;UBERON:0001764,7.89e-13,1;UBERON:0001825,7.89e-13,1;UBERON:0001041,1.97e-11,87;UBERON:0000002,1.39e-08,6;UBERON:0001560,1.39e-08,6;UBERON:0004921,5.42e-08,118;UBERON:0001007,1.20e-07,145;UBERON:0001555,1.20e-07,145;UBERON:0007026,1.20e-07,145;UBERON:0004903,5.41e-07,2;UBERON:0002173,5.41e-07,2;UBERON:0002186,5.41e-07,2;UBERON:0001048,7.71e-07,160;UBERON:0004119,8.69e-07,160;UBERON:0000925,8.69e-07,160;UBERON:0006595,8.69e-07,160 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.07597680103594,3.70886318171824,2.6511213287183,3.19852520923942,0.871517776369625,2.60997681022206,2.42696354688296,3.13954344200554,2.30848294167834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.69544237579135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.557216921387392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.57656570526979,1.89110145414349,0,0,0,0,0,0,0,0,0,7.84356937336729,0,0,0,1.1528195219403,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26598838716816,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586993856796269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52301758477914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0,0,0.592834895693833,0,0,0,0,0,0,5.9680556575089,0,0,0,0,0,0,0,0.249960815924213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.67878926924211,0,0,0,0,0.603851374266694,0,0,0,0,0,0,0,0,0,0,0,0,0.535661815816973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224263725161227,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.07597680103594,3.70886318171824,2.6511213287183,3.19852520923942,0.871517776369625,2.60997681022206,2.42696354688296,3.13954344200554,2.30848294167834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0.773288812777695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.69544237579135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.557216921387392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.57656570526979,1.89110145414349,0,0,0,0,0,0,0,0,0,7.84356937336729,0,0,0,1.1528195219403,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26598838716816,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586993856796269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52301758477914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0,0,0,0,0,0,0,0,0.592834895693833,0,0,0,0,0,0,5.9680556575089,0,0,0,0,0,0,0,0.249960815924213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.67878926924211,0,0,0,0,0.603851374266694,0,0,0,0,0,0,0,0,0,0,0,0,0.535661815816973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224263725161227,0.0636471582781649,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr16:76269298..76269317,+ | |short_description=p@chr16:76269298..76269317,+ | ||
}} | }} |
Latest revision as of 12:28, 25 July 2015
Short description: | p@chr16:76269298..76269317, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr16:76269298..76269317, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
larynx | 1.51e-77 | 9 |
upper respiratory tract | 2.15e-36 | 19 |
respiratory primordium | 7.90e-28 | 38 |
endoderm of foregut | 7.90e-28 | 38 |
segment of respiratory tract | 2.89e-22 | 47 |
respiratory tract | 3.23e-19 | 54 |
respiratory system | 1.12e-16 | 74 |
maxillary sinus | 7.89e-13 | 1 |
paranasal sinus | 7.89e-13 | 1 |
foregut | 1.97e-11 | 87 |
uterine cervix | 1.39e-08 | 6 |
neck of organ | 1.39e-08 | 6 |
subdivision of digestive tract | 5.42e-08 | 118 |
digestive system | 1.20e-07 | 145 |
digestive tract | 1.20e-07 | 145 |
primitive gut | 1.20e-07 | 145 |
bronchoalveolar duct junction | 5.41e-07 | 2 |
alveolar duct | 5.41e-07 | 2 |
bronchiole | 5.41e-07 | 2 |
primordium | 7.71e-07 | 160 |
endoderm-derived structure | 8.69e-07 | 160 |
endoderm | 8.69e-07 | 160 |
presumptive endoderm | 8.69e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 8.80e-16 | 106 |
cell type cancer | 3.78e-13 | 143 |
paranasal sinus cancer | 7.89e-13 | 1 |
maxillary sinus cancer | 7.89e-13 | 1 |
cancer | 2.15e-11 | 235 |
disease of cellular proliferation | 4.13e-11 | 239 |
cervical cancer | 3.97e-10 | 5 |
bronchus cancer | 2.77e-07 | 7 |
bronchogenic carcinoma | 2.77e-07 | 7 |
lung adenocarcinoma | 5.41e-07 | 2 |
respiratory system cancer | 7.09e-07 | 16 |